Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Leptospirales; Leptospiraceae; Leptospira.
Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira
Submitted (14-NOV-2017) Microbiology, INRS-Institut Armand Frappier, 531 Bd des Prairies, Montreal, Quebec H7V1B7, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP024873.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0.140936\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 230.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 13:32:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,665\nCDSs (total) :: 3,621\nGenes (coding) :: 3,415\nCDSs (with protein) :: 3,415\nGenes (RNA) :: 44\nrRNAs :: 1, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 2\nPseudo Genes (total) :: 206\nCDSs (without protein) :: 206\nPseudo Genes (ambiguous residues) :: 0 of 206\nPseudo Genes (frameshifted) :: 125 of 206\nPseudo Genes (incomplete) :: 148 of 206\nPseudo Genes (internal stop) :: 49 of 206\nPseudo Genes (multiple problems) :: 91 of 206\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000188008.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004440700.1
COORDINATES: similar to AA sequence:RefSeq:WP_004440783.1
COORDINATES: similar to AA sequence:RefSeq:WP_002177317.1
COORDINATES: similar to AA sequence:RefSeq:WP_004425780.1
COORDINATES: protein motif:HMM:TIGR01784.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004440806.1
COORDINATES: similar to AA sequence:RefSeq:WP_002177310.1
COORDINATES: similar to AA sequence:RefSeq:WP_000920148.1
COORDINATES: similar to AA sequence:RefSeq:WP_004768838.1
COORDINATES: similar to AA sequence:RefSeq:WP_004768818.1
COORDINATES: similar to AA sequence:RefSeq:WP_001110716.1
COORDINATES: similar to AA sequence:RefSeq:WP_002177286.1
COORDINATES: similar to AA sequence:RefSeq:WP_017213273.1
COORDINATES: similar to AA sequence:RefSeq:WP_000513073.1
COORDINATES: similar to AA sequence:RefSeq:WP_001207823.1
COORDINATES: similar to AA sequence:RefSeq:WP_004768787.1
COORDINATES: similar to AA sequence:RefSeq:WP_017213276.1
COORDINATES: similar to AA sequence:RefSeq:WP_000526267.1
COORDINATES: protein motif:HMM:NF039366.1
COORDINATES: similar to AA sequence:RefSeq:WP_004425845.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000371778.1
COORDINATES: protein motif:HMM:NF037921.2
COORDINATES: similar to AA sequence:RefSeq:WP_002746275.1
COORDINATES: similar to AA sequence:RefSeq:WP_017213284.1
COORDINATES: similar to AA sequence:RefSeq:WP_004425860.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746281.1
COORDINATES: similar to AA sequence:RefSeq:WP_002177253.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746302.1
COORDINATES: similar to AA sequence:RefSeq:WP_002177360.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002746195.1
COORDINATES: similar to AA sequence:RefSeq:WP_017860362.1
COORDINATES: similar to AA sequence:RefSeq:WP_004440694.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016754376.1
COORDINATES: similar to AA sequence:RefSeq:WP_004503480.1
COORDINATES: similar to AA sequence:RefSeq:WP_010576888.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004500359.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004500350.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002746315.1
COORDINATES: similar to AA sequence:RefSeq:WP_004500364.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_002746223.1
COORDINATES: similar to AA sequence:RefSeq:WP_004465950.1
COORDINATES: similar to AA sequence:RefSeq:WP_001001378.1
SpvB/TcaC N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002745097.1
COORDINATES: similar to AA sequence:RefSeq:WP_004473240.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002748945.1
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_002748946.1
LA_2444/LA_4059 family outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_016758958.1
COORDINATES: similar to AA sequence:RefSeq:WP_011669592.1
COORDINATES: similar to AA sequence:RefSeq:WP_002748949.1
COORDINATES: similar to AA sequence:RefSeq:WP_002732799.1
COORDINATES: similar to AA sequence:RefSeq:WP_002748939.1
COORDINATES: similar to AA sequence:RefSeq:WP_017850895.1
COORDINATES: similar to AA sequence:RefSeq:WP_002115808.1
COORDINATES: protein motif:HMM:NF025574.2
COORDINATES: similar to AA sequence:RefSeq:WP_020773280.1
COORDINATES: similar to AA sequence:RefSeq:WP_002749079.1
COORDINATES: protein motif:HMM:NF033580.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002764322.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004507327.1
COORDINATES: similar to AA sequence:RefSeq:WP_001030779.1
COORDINATES: similar to AA sequence:RefSeq:WP_001052327.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000820914.1
COORDINATES: similar to AA sequence:RefSeq:WP_077143899.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002745514.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_002746235.1
COORDINATES: similar to AA sequence:RefSeq:WP_017859141.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746216.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746312.1
COORDINATES: similar to AA sequence:RefSeq:WP_017853744.1
COORDINATES: similar to AA sequence:RefSeq:WP_004504233.1
COORDINATES: similar to AA sequence:RefSeq:WP_000810811.1
COORDINATES: similar to AA sequence:RefSeq:WP_004440698.1
COORDINATES: similar to AA sequence:RefSeq:WP_004478275.1
COORDINATES: similar to AA sequence:RefSeq:WP_000935091.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746214.1
COORDINATES: similar to AA sequence:RefSeq:WP_002177276.1
COORDINATES: similar to AA sequence:RefSeq:WP_017860243.1
COORDINATES: similar to AA sequence:RefSeq:WP_004440797.1
COORDINATES: similar to AA sequence:RefSeq:WP_004425871.1
COORDINATES: similar to AA sequence:RefSeq:WP_000402437.1
COORDINATES: similar to AA sequence:RefSeq:WP_002177279.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746304.1