Dryobates pubescens isolate bDryPub1 chromosome W, bDryPub1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026038.1.\nAssembly name: bDryPub1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/10/02. The original whole-genome shotgun project has the\naccession JACNMV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-JUL-2020\nAssembly Method :: FALCON v. 1.3.0 2018.31.08-03.06;\n FALCON-Unzip v. 1.2.0 6.0.0.47841;\n purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n Scaff10x v. 4.1.0; Bionano Solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Longranger Align v. 2.2.2;\n freebayes v. 1.3.1; gEVAL manual curation\n v. 2020-07-16; VGP assembly pipeline v.\n 1.6\nAssembly Name :: bDryPub1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.43x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_014839835.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/06/2023\n##Genome-Annotation-Data-END##
ras GTPase-activating protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC104301086; Derived by automated computational analysis using gene prediction method: Gnomon.
nipped-B-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
protein C18orf25 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
zinc finger protein 131; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 131
RNA-binding E3 ubiquitin-protein ligase MEX3C; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding E3 ubiquitin-protein ligase MEX3C
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transfer RNA isoleucine (anticodon GAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
SMAD family member 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
mothers against decapentaplegic homolog 4
zinc finger SWIM domain-containing protein 6; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger SWIM domain-containing protein 6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
tropomyosin beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
LOW QUALITY PROTEIN: tropomyosin beta chain-like
Golgi phosphoprotein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
mothers against decapentaplegic homolog 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
centromere protein T-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
spindlin-Z; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
transitional endoplasmic reticulum ATPase; Derived by automated computational analysis using gene prediction method: Gnomon.
transitional endoplasmic reticulum ATPase, transcript variant X1
transitional endoplasmic reticulum ATPase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
transitional endoplasmic reticulum ATPase isoform X1
transitional endoplasmic reticulum ATPase isoform X2
uncharacterized LOC128899332; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128899332, transcript variant X2
uncharacterized LOC128899332, transcript variant X1
chromodomain-helicase-DNA-binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain-helicase-DNA-binding protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
chromodomain-helicase-DNA-binding protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain-helicase-DNA-binding protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
mesoderm induction early response protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
mesoderm induction early response protein 3, transcript variant X1
mesoderm induction early response protein 3, transcript variant X2
mesoderm induction early response protein 3 isoform X1
mesoderm induction early response protein 3 isoform X2
mesoderm induction early response protein 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
mesoderm induction early response protein 3 isoform X3
zinc finger RNA-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
small nucleolar RNA SNORA66; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00155
Derived by automated computational analysis using gene prediction method: cmsearch.
activated RNA polymerase II transcriptional coactivator p15-like; Derived by automated computational analysis using gene prediction method: Gnomon.
activated RNA polymerase II transcriptional coactivator p15-like