Dryobates pubescens isolate bDryPub1 chromosome 44, bDryPub1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026037.1.\nAssembly name: bDryPub1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/10/02. The original whole-genome shotgun project has the\naccession JACNMV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-JUL-2020\nAssembly Method :: FALCON v. 1.3.0 2018.31.08-03.06;\n FALCON-Unzip v. 1.2.0 6.0.0.47841;\n purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n Scaff10x v. 4.1.0; Bionano Solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Longranger Align v. 2.2.2;\n freebayes v. 1.3.1; gEVAL manual curation\n v. 2020-07-16; VGP assembly pipeline v.\n 1.6\nAssembly Name :: bDryPub1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.43x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_014839835.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/06/2023\n##Genome-Annotation-Data-END##
helicase SRCAP-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
ring finger protein 40; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
sodium/glucose cotransporter 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
RUS family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
IgGFc-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
amyloid beta precursor protein binding family B member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
amyloid beta precursor protein binding family B member 3
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: amyloid-beta A4 precursor protein-binding family B member 3
steroid receptor RNA activator 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat and KH domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat and KH domain containing 1, transcript variant X1
ankyrin repeat and KH domain-containing protein 1 isoform X1
ankyrin repeat and KH domain containing 1, transcript variant X2
ankyrin repeat and KH domain-containing protein 1 isoform X2
solute carrier family 4 member 9; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: anion exchange protein 4
heparin binding EGF like growth factor; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
proheparin-binding EGF-like growth factor
prefoldin subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
cysteine rich transmembrane module containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine rich transmembrane module containing 1
COORDINATES: polyA evidence [ECO:0006239]
cysteine-rich and transmembrane domain-containing protein 1