Dryobates pubescens isolate bDryPub1 chromosome 41, bDryPub1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026034.1.\nAssembly name: bDryPub1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/10/02. The original whole-genome shotgun project has the\naccession JACNMV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-JUL-2020\nAssembly Method :: FALCON v. 1.3.0 2018.31.08-03.06;\n FALCON-Unzip v. 1.2.0 6.0.0.47841;\n purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n Scaff10x v. 4.1.0; Bionano Solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Longranger Align v. 2.2.2;\n freebayes v. 1.3.1; gEVAL manual curation\n v. 2020-07-16; VGP assembly pipeline v.\n 1.6\nAssembly Name :: bDryPub1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.43x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_014839835.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/06/2023\n##Genome-Annotation-Data-END##
CD244 molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
CD48 antigen; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
signaling lymphocytic activation molecule-like; Derived by automated computational analysis using gene prediction method: Gnomon.
signaling lymphocytic activation molecule-like
VANGL planar cell polarity protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
VANGL planar cell polarity protein 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
VANGL planar cell polarity protein 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
nescient helix-loop-helix 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
COPI coat complex subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A11-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
trichohyalin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
cornulin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 16-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein 9; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC104297481; Derived by automated computational analysis using gene prediction method: Gnomon.
MAGE-like protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC104297480; Derived by automated computational analysis using gene prediction method: Gnomon.
claw keratin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
scale keratin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
scale keratin; Derived by automated computational analysis using gene prediction method: Gnomon.
sericin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
feather keratin B-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
feather beta keratin; Derived by automated computational analysis using gene prediction method: Gnomon.
feather keratin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
feather keratin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 105 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 108 Proteins
beta-keratin-related protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
claw keratin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
keratin-associated protein 21-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 19-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128899244; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128899247; Derived by automated computational analysis using gene prediction method: Gnomon.
putative small proline-rich protein 5; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 5-5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
loricrin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 5-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
S100 calcium binding protein A16; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
S100 calcium binding protein A14; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A13; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A1; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
chromatin target of PRMT1; Derived by automated computational analysis using gene prediction method: Gnomon.
chromatin target of PRMT1, transcript variant X4
chromatin target of PRMT1, transcript variant X1
chromatin target of PRMT1, transcript variant X2
chromatin target of PRMT1, transcript variant X3
chromatin target of PRMT1 protein isoform X1
chromatin target of PRMT1 protein isoform X2
chromatin target of PRMT1 protein isoform X3
mothers against decapentaplegic homolog 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
ribosomal protein S27; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins
RAB13, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: Gnomon.
RAB13, member RAS oncogene family, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87 Proteins
RAB13, member RAS oncogene family, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86 Proteins
jumping translocation breakpoint; Derived by automated computational analysis using gene prediction method: Gnomon.
cAMP responsive element binding protein 3 like 4; Derived by automated computational analysis using gene prediction method: Gnomon.
cAMP responsive element binding protein 3 like 4
cyclic AMP-responsive element-binding protein 3-like protein 4
solute carrier family 39 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
CREB regulated transcription coactivator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
CREB regulated transcription coactivator 2
CREB-regulated transcription coactivator 2
DENN domain containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
LOW QUALITY PROTEIN: DENN domain-containing protein 4B
GATA zinc finger domain containing 2B; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 27 member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain fatty acid transport protein 3
integrator complex subunit 3; Derived by automated computational analysis using gene prediction method: Gnomon.
natriuretic peptide receptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
interleukin enhancer binding factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
SNAP associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
extracellular matrix protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: extracellular matrix protein 1
threonyl-tRNA synthetase 2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
threonyl-tRNA synthetase 2, mitochondrial
regulation of nuclear pre-mRNA domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
regulation of nuclear pre-mRNA domain containing 2, transcript variant X2
regulation of nuclear pre-mRNA domain containing 2, transcript variant X1
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X2
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X1
pre-mRNA processing factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
U4/U6 small nuclear ribonucleoprotein Prp3
mitochondrial ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Gnomon.
28S ribosomal protein S21, mitochondrial
circadian associated repressor of transcription; Derived by automated computational analysis using gene prediction method: Gnomon.
circadian associated repressor of transcription
circadian-associated transcriptional repressor
carbonic anhydrase 14; Derived by automated computational analysis using gene prediction method: Gnomon.
aph-1 homolog A, gamma-secretase subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
aph-1 homolog A, gamma-secretase subunit
M1-specific T cell receptor beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
M1-specific T cell receptor beta chain-like
acidic nuclear phosphoprotein 32 family member E; Derived by automated computational analysis using gene prediction method: Gnomon.
acidic nuclear phosphoprotein 32 family member E, transcript variant X2
acidic nuclear phosphoprotein 32 family member E, transcript variant X1
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2
sodium channel modifier 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LysM domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
lysM and putative peptidoglycan-binding domain-containing protein 1