Dryobates pubescens isolate bDryPub1 chromosome 38, bDryPub1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026031.1.\nAssembly name: bDryPub1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/10/02. The original whole-genome shotgun project has the\naccession JACNMV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-JUL-2020\nAssembly Method :: FALCON v. 1.3.0 2018.31.08-03.06;\n FALCON-Unzip v. 1.2.0 6.0.0.47841;\n purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n Scaff10x v. 4.1.0; Bionano Solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Longranger Align v. 2.2.2;\n freebayes v. 1.3.1; gEVAL manual curation\n v. 2020-07-16; VGP assembly pipeline v.\n 1.6\nAssembly Name :: bDryPub1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.43x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_014839835.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/06/2023\n##Genome-Annotation-Data-END##
eukaryotic translation initiation factor 1B; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
eukaryotic translation initiation factor 1B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1b
prolactin releasing hormone; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
myosin VIIA and Rab interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane channel like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
40S ribosomal protein SA; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
small nucleolar RNA SNORA62/SNORA6 family; Derived by automated computational analysis using gene prediction method: cmsearch.
small nucleolar RNA SNORA62/SNORA6 family
COORDINATES: nucleotide motif:Rfam:14.6:RF00091
Derived by automated computational analysis using gene prediction method: cmsearch.
solute carrier family 25 member 38; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 25 member 38, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
solute carrier family 25 member 38, transcript variant X2
mitochondrial glycine transporter isoform X1
mitochondrial glycine transporter isoform X2
C-X3-C motif chemokine receptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
cohesin subunit SA-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
C-C motif chemokine receptor 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
galactosidase beta 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
transmembrane protein with metallophosphoesterase domain; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein with metallophosphoesterase domain
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
AVL9 cell migration associated; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
late secretory pathway protein AVL9 homolog
kelch repeat and BTB domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
kelch repeat and BTB domain containing 2, transcript variant X2
kelch repeat and BTB domain containing 2, transcript variant X1
kelch repeat and BTB domain containing 2, transcript variant X3
kelch repeat and BTB domain containing 2, transcript variant X4
kelch repeat and BTB domain-containing protein 2
uncharacterized LOC104304266; Derived by automated computational analysis using gene prediction method: Gnomon.
RP9 pre-mRNA splicing factor; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
FKBP prolyl isomerase 9; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
peptidyl-prolyl cis-trans isomerase FKBP9
5'-nucleotidase, cytosolic IIIA; Derived by automated computational analysis using gene prediction method: Gnomon.
5'-nucleotidase, cytosolic IIIA, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
5'-nucleotidase, cytosolic IIIA, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Bardet-Biedl syndrome 9; Derived by automated computational analysis using gene prediction method: Gnomon.
BMP binding endothelial regulator; Derived by automated computational analysis using gene prediction method: Gnomon.
BMP binding endothelial regulator, transcript variant X1
BMP binding endothelial regulator, transcript variant X2
BMP-binding endothelial regulator protein isoform X1
BMP-binding endothelial regulator protein isoform X2
neuropeptide S receptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
LOW QUALITY PROTEIN: neuropeptide S receptor
dpy-19 like C-mannosyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
T-box transcription factor 20; Derived by automated computational analysis using gene prediction method: Gnomon.
U2 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00004
HERPUD family member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
septin 7; Derived by automated computational analysis using gene prediction method: Gnomon.
endonuclease/exonuclease/phosphatase family domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
endonuclease/exonuclease/phosphatase family domain containing 1
endonuclease/exonuclease/phosphatase family domain-containing protein 1
microtubule associated tyrosine carboxypeptidase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule associated tyrosine carboxypeptidase 2, transcript variant X3
microtubule associated tyrosine carboxypeptidase 2, transcript variant X1
putative tyrosine carboxypeptidase MATCAP2 isoform X3
putative tyrosine carboxypeptidase MATCAP2 isoform X1
microtubule associated tyrosine carboxypeptidase 2, transcript variant X2
putative tyrosine carboxypeptidase MATCAP2 isoform X2
anillin, actin binding protein; Derived by automated computational analysis using gene prediction method: Gnomon.
acyloxyacyl hydrolase; Derived by automated computational analysis using gene prediction method: Gnomon.
engulfment and cell motility 1; Derived by automated computational analysis using gene prediction method: Gnomon.
engulfment and cell motility 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
engulfment and cell motility 1, transcript variant X2
engulfment and cell motility 1, transcript variant X3
engulfment and cell motility 1, transcript variant X4
engulfment and cell motility 1, transcript variant X5
engulfment and cell motility protein 1 isoform X1
engulfment and cell motility protein 1 isoform X2
transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
probable G-protein coupled receptor 141; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
NME/NM23 family member 8; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: thioredoxin domain-containing protein 3
secreted frizzled related protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
ependymin related 1; Derived by automated computational analysis using gene prediction method: Gnomon.
STARD3 N-terminal like; Derived by automated computational analysis using gene prediction method: Gnomon.
STARD3 N-terminal like, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
STARD3 N-terminal like, transcript variant X1
STARD3 N-terminal like, transcript variant X3
STARD3 N-terminal like, transcript variant X4
STARD3 N-terminal-like protein isoform X1
STARD3 N-terminal-like protein isoform X2
STARD3 N-terminal-like protein isoform X3
mutL homolog 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
tetratricopeptide repeat and ankyrin repeat containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
tetratricopeptide repeat and ankyrin repeat containing 1
TPR and ankyrin repeat-containing protein 1
doublecortin like kinase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
SH3 and cysteine rich domain; Derived by automated computational analysis using gene prediction method: Gnomon.
SH3 and cysteine-rich domain-containing protein
cAMP regulated phosphoprotein 21; Derived by automated computational analysis using gene prediction method: Gnomon.
programmed cell death 6 interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon.
programmed cell death 6 interacting protein, transcript variant X2
programmed cell death 6 interacting protein, transcript variant X1
programmed cell death 6-interacting protein isoform X2
programmed cell death 6-interacting protein isoform X1
cytoplasmic linker associated protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
cytoplasmic linker associated protein 2, transcript variant X1
cytoplasmic linker associated protein 2, transcript variant X2
cytoplasmic linker associated protein 2, transcript variant X5
cytoplasmic linker associated protein 2, transcript variant X3
cytoplasmic linker associated protein 2, transcript variant X4
cytoplasmic linker associated protein 2, transcript variant X6
cytoplasmic linker associated protein 2, transcript variant X19
cytoplasmic linker associated protein 2, transcript variant X7
cytoplasmic linker associated protein 2, transcript variant X8
cytoplasmic linker associated protein 2, transcript variant X21
cytoplasmic linker associated protein 2, transcript variant X9
cytoplasmic linker associated protein 2, transcript variant X22
cytoplasmic linker associated protein 2, transcript variant X20
cytoplasmic linker associated protein 2, transcript variant X18
cytoplasmic linker associated protein 2, transcript variant X12
cytoplasmic linker associated protein 2, transcript variant X10
cytoplasmic linker associated protein 2, transcript variant X23
cytoplasmic linker associated protein 2, transcript variant X11
cytoplasmic linker associated protein 2, transcript variant X13
cytoplasmic linker associated protein 2, transcript variant X14
cytoplasmic linker associated protein 2, transcript variant X15
cytoplasmic linker associated protein 2, transcript variant X16
cytoplasmic linker associated protein 2, transcript variant X17
upstream binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
upstream binding protein 1, transcript variant X2
upstream binding protein 1, transcript variant X1
upstream binding protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
F-box and leucine rich repeat protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box and leucine rich repeat protein 2, transcript variant X1
F-box and leucine rich repeat protein 2, transcript variant X2
sushi domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
cartilage associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat containing 3B; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat-containing protein 3B
deleted in malignant brain tumors 1 protein; Derived by automated computational analysis using gene prediction method: Gnomon.
deleted in malignant brain tumors 1 protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64 Proteins
S-antigen protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
endothelial zinc finger protein induced by tumor necrosis factor alpha-like; Derived by automated computational analysis using gene prediction method: Gnomon.
endothelial zinc finger protein induced by tumor necrosis factor alpha-like
butyrophilin-like protein 9; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 2 member A2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC104306943; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 25-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 25-like
natterin-4; Derived by automated computational analysis using gene prediction method: Gnomon.