Dryobates pubescens isolate bDryPub1 chromosome 37, bDryPub1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026030.1.\nAssembly name: bDryPub1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/10/02. The original whole-genome shotgun project has the\naccession JACNMV000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-JUL-2020\nAssembly Method :: FALCON v. 1.3.0 2018.31.08-03.06;\n FALCON-Unzip v. 1.2.0 6.0.0.47841;\n purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n Scaff10x v. 4.1.0; Bionano Solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Longranger Align v. 2.2.2;\n freebayes v. 1.3.1; gEVAL manual curation\n v. 2020-07-16; VGP assembly pipeline v.\n 1.6\nAssembly Name :: bDryPub1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.43x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_014839835.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/06/2023\n##Genome-Annotation-Data-END##
signal transducer and activator of transcription 4; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 1; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
signal transducer and activator of transcription 1-alpha/beta
glutaminase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
glutaminase kidney isoform, mitochondrial
NGFI-A binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
NGFI-A binding protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
NGFI-A binding protein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
nuclear envelope integral membrane protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear envelope integral membrane protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
major facilitator superfamily domain containing 6; Derived by automated computational analysis using gene prediction method: Gnomon.
major facilitator superfamily domain containing 6, transcript variant X2
major facilitator superfamily domain containing 6, transcript variant X1
major facilitator superfamily domain-containing protein 6 isoform X1
major facilitator superfamily domain containing 6, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
major facilitator superfamily domain containing 6, transcript variant X3
major facilitator superfamily domain-containing protein 6 isoform X3
major facilitator superfamily domain-containing protein 6 isoform X2
3-hydroxyisobutyryl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
chromosome 37 C2orf88 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
chromosome 37 C2orf88 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
chromosome 37 C2orf88 homolog, transcript variant X1
myostatin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
PMS1 homolog 1, mismatch repair system component; Derived by automated computational analysis using gene prediction method: Gnomon.
PMS1 homolog 1, mismatch repair system component
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
ORMDL sphingolipid biosynthesis regulator 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ORMDL sphingolipid biosynthesis regulator 1
O-sialoglycoprotein endopeptidase like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
O-sialoglycoprotein endopeptidase like 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial
asparagine synthetase domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
asparagine synthetase domain containing 1
asparagine synthetase domain-containing protein 1
ASNSD1 upstream open reading frame; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
ASNSD1 upstream open reading frame protein
solute carrier family 40 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
WD repeat domain 75; Derived by automated computational analysis using gene prediction method: Gnomon.
collagen alpha-2(V) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
collagen type V alpha 2 chain; Derived by automated computational analysis using gene prediction method: Gnomon.
collagen type III alpha 1 chain; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128899030; Derived by automated computational analysis using gene prediction method: Gnomon.
GULP PTB domain containing engulfment adaptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
GULP PTB domain containing engulfment adaptor 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
GULP PTB domain containing engulfment adaptor 1, transcript variant X1
GULP PTB domain containing engulfment adaptor 1, transcript variant X5
GULP PTB domain containing engulfment adaptor 1, transcript variant X4
GULP PTB domain containing engulfment adaptor 1, transcript variant X2
GULP PTB domain containing engulfment adaptor 1, transcript variant X6
PTB domain-containing engulfment adapter protein 1 isoform X3
PTB domain-containing engulfment adapter protein 1 isoform X5
PTB domain-containing engulfment adapter protein 1 isoform X1
PTB domain-containing engulfment adapter protein 1 isoform X4
PTB domain-containing engulfment adapter protein 1 isoform X6
PTB domain-containing engulfment adapter protein 1 isoform X2
tissue factor pathway inhibitor; Derived by automated computational analysis using gene prediction method: Gnomon.
calcitonin receptor like receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
calcitonin gene-related peptide type 1 receptor
family with sequence similarity 171 member B; Derived by automated computational analysis using gene prediction method: Gnomon.
family with sequence similarity 171 member B
integrin subunit alpha V; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
zinc finger CCCH-type containing 15; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
zinc finger CCCH domain-containing protein 15
zinc finger protein 804A; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin light chain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin light chain 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
myosin light chain 1/3, skeletal muscle isoform isoform X1
myosin light chain 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
myosin light chain 1/3, skeletal muscle isoform isoform X2
acyl-CoA dehydrogenase long chain; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
long-chain specific acyl-CoA dehydrogenase, mitochondrial
KAT8 regulatory NSL complex subunit 1 like; Derived by automated computational analysis using gene prediction method: Gnomon.
KAT8 regulatory NSL complex subunit 1 like
KAT8 regulatory NSL complex subunit 1-like protein
ribulose-5-phosphate-3-epimerase; Derived by automated computational analysis using gene prediction method: Gnomon.
unc-80 homolog, NALCN channel complex subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
unc-80 homolog, NALCN channel complex subunit
PHD finger protein 7; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule associated protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule associated protein 2, transcript variant X2
microtubule associated protein 2, transcript variant X10
microtubule associated protein 2, transcript variant X11
microtubule associated protein 2, transcript variant X5
microtubule associated protein 2, transcript variant X7
microtubule associated protein 2, transcript variant X3
microtubule associated protein 2, transcript variant X6
microtubule associated protein 2, transcript variant X4
microtubule associated protein 2, transcript variant X1
microtubule associated protein 2, transcript variant X20
microtubule associated protein 2, transcript variant X18
microtubule associated protein 2, transcript variant X21
microtubule associated protein 2, transcript variant X19
microtubule associated protein 2, transcript variant X9
microtubule associated protein 2, transcript variant X8
microtubule associated protein 2, transcript variant X13
microtubule associated protein 2, transcript variant X12
microtubule associated protein 2, transcript variant X17
microtubule associated protein 2, transcript variant X16
microtubule associated protein 2, transcript variant X15
microtubule associated protein 2, transcript variant X14
microtubule-associated protein 2 isoform X10
microtubule-associated protein 2 isoform X9
microtubule-associated protein 2 isoform X4
microtubule-associated protein 2 isoform X16
microtubule-associated protein 2 isoform X15
microtubule-associated protein 2 isoform X19
microtubule-associated protein 2 isoform X6
microtubule-associated protein 2 isoform X17
microtubule-associated protein 2 isoform X2
microtubule-associated protein 2 isoform X14
microtubule-associated protein 2 isoform X12
microtubule-associated protein 2 isoform X13
microtubule-associated protein 2 isoform X11
microtubule-associated protein 2 isoform X20
microtubule-associated protein 2 isoform X18
microtubule-associated protein 2 isoform X5
microtubule-associated protein 2 isoform X8
microtubule-associated protein 2 isoform X3
microtubule-associated protein 2 isoform X7
microtubule-associated protein 2 isoform X1
transfer RNA serine (anticodon AGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
frizzled related protein; Derived by automated computational analysis using gene prediction method: Gnomon.
NCK associated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
NCK associated protein 1, transcript variant X4
NCK associated protein 1, transcript variant X3
NCK associated protein 1, transcript variant X2
NCK associated protein 1, transcript variant X1
dual specificity phosphatase 19; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleoporin 35; Derived by automated computational analysis using gene prediction method: Gnomon.
LanC like glutathione S-transferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
carbamoyl-phosphate synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
carbamoyl-phosphate synthase [ammonia], mitochondrial
erb-b2 receptor tyrosine kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128899031; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128899028; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin-like protein KIF18B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
leucine rich repeat containing 4C; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat containing 4C, transcript variant X2
leucine rich repeat containing 4C, transcript variant X1
leucine-rich repeat-containing protein 4C
uncharacterized LOC128899029; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific gene 10 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
intraflagellar transport associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
intraflagellar transport associated protein
intraflagellar transport-associated protein
recombination activating 2; Derived by automated computational analysis using gene prediction method: Gnomon.
V(D)J recombination-activating protein 2
recombination activating 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
V(D)J recombination-activating protein 1
TNF receptor associated factor 6; Derived by automated computational analysis using gene prediction method: Gnomon.
scavenger receptor cysteine-rich type 1 protein M130-like; Derived by automated computational analysis using gene prediction method: Gnomon.
scavenger receptor cysteine-rich type 1 protein M130-like