Megalops cyprinoides mitochondrion, complete genome.
type: Entry
definition: Megalops cyprinoides mitochondrion, complete genome.
sequence version: NC_005799.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_005799.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Megalops cyprinoides (Indo-Pacific tarpon)
organism: Megalops cyprinoides
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Elopiformes; Megalopidae; Megalops.
reference: 1
references: 15186813
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AB051110.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16412
topology: circular
so has quality: SO_0000988
location: 1..16412
location: region:1-16412:1
RO_0002162: 118141

NC_005799
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Mitogenomic evidence for the monophyly of elopomorph fishes (Teleostei) and the evolutionary origin of the leptocephalus larva
author: Inoue, J.G.
author: Miya, M.
author: Tsukamoto, K.
author: Nishida, M.
journal: Mol. Phylogenet. Evol.
volume: 32
issue: 1
pages: 274-286
year: 2004
pubmed: 15186813

15186813
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (18-NOV-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Inoue, J.G.
author: Miya, M.
author: Tsukamoto, K.
author: Nishida, M.
journal: Submitted (14-NOV-2000) University of Tokyo, Ocean Research Institute; 1-15-1 Minamidai, Nakano-ku, Tokyo 164-8639, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16412:1
position: 16412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-16412:1:source
so part of: sequence
organism: Megalops cyprinoides
organelle: mitochondrion
mol type: genomic DNA
specimen voucher: CBM-ZF 10300 (Natural History Museum & Institute, Chiba, Japan)

118141
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Phe
so part of: sequence
location: 1..71
location: region:1-71:1
so has part: feature:1-71:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-71:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 118141
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 72..1024
location: region:72-1024:1
so has part: feature:72-1024:1:region

position:72:1
position: 72
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1024:1
position: 1024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72-1024:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Val
so part of: sequence
location: 1025..1098
location: region:1025-1098:1
so has part: feature:1025-1098:1:region

position:1025:1
position: 1025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1098:1
position: 1098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1098:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 118141
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1099..2796
location: region:1099-2796:1
so has part: feature:1099-2796:1:region

position:1099:1
position: 1099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2796:1
position: 2796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1099-2796:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2797..2871
location: region:2797-2871:1
so has part: feature:2797-2871:1:region

position:2797:1
position: 2797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2871:1
position: 2871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2797-2871:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ND1
so part of: sequence
location: 2872..3846
location: region:2872-3846:1
so has part: feature:2872-3846:1:exon
subclass of: SO_0000010

2763078
type: Gene
SIO_000068: ncbigene

position:2872:1
position: 2872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3846:1
position: 3846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2872-3846:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MISTLISHIINPLAYIIPILLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLWAPMPMPHPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLATIILAGNFTLYTFGIAQEAIWLLAPNWPLAAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSTILFLGATHNPLLPEMTALNLMTKAATLSIIFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVLWHTALPIAIAGLPPQT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2872..3846
location: region:2872-3846:1
so has part: feature:2872-3846:1:exon

NP_991002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2872-3846:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Ile
so part of: sequence
location: 3858..3929
location: region:3858-3929:1
so has part: feature:3858-3929:1:region

position:3858:1
position: 3858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3929:1
position: 3929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3858-3929:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Gln
so part of: sequence
location: complement(3929..3999)
location: region:3929-3999:-1
so has part: feature:3929-3999:-1:region

position:3929:-1
position: 3929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3999:-1
position: 3999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3929-3999:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Met
so part of: sequence
location: 3999..4067
location: region:3999-4067:1
so has part: feature:3999-4067:1:region

position:3999:1
position: 3999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4067:1
position: 4067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3999-4067:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ND2
so part of: sequence
location: 4068..5112
location: region:4068-5112:1
so has part: feature:4068-5112:1:exon
subclass of: SO_0000010

2763067
type: Gene
SIO_000068: ncbigene

position:4068:1
position: 4068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5112:1
position: 5112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4068-5112:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5112,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPLIPMILLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPMMSRHHHPRAVEAATKYFLIQATAAALILFASLTNAWLTGTWNVQQLTDPTATTLAMMGLALKIGLAPAHFWLPEVLQGLDLTMGLILSTWQKLAPFALIYQIAPTVQPTLLITLGIMSALIGGWGGLNQTQLRKILAYSSIAHLGWMIIILQLMPPLTILNLAIYITMTTTMFLSLKTSTTTKINTMATSWAKTPALATMTTLALLSLGGLPPLTGFMPKWLIIQELTKQNLNPTAMVMAMAALLSLFFYLRLCYTTALTISPNTNNTTSHWRTPPTQTNPTLPLTMTGTIMLLPITPAILSLTS
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4068..5112
location: region:4068-5112:1
so has part: feature:4068-5112:1:exon

NP_991003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4068-5112:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Trp
so part of: sequence
location: 5113..5181
location: region:5113-5181:1
so has part: feature:5113-5181:1:region

position:5113:1
position: 5113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5181:1
position: 5181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5113-5181:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Ala
so part of: sequence
location: complement(5183..5251)
location: region:5183-5251:-1
so has part: feature:5183-5251:-1:region

position:5183:-1
position: 5183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5251:-1
position: 5251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5183-5251:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Asn
so part of: sequence
location: complement(5253..5325)
location: region:5253-5325:-1
so has part: feature:5253-5325:-1:region

position:5253:-1
position: 5253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5325:-1
position: 5325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5253-5325:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Cys
so part of: sequence
location: complement(5368..5433)
location: region:5368-5433:-1
so has part: feature:5368-5433:-1:region

position:5368:-1
position: 5368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5433:-1
position: 5433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5368-5433:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Tyr
so part of: sequence
location: complement(5434..5504)
location: region:5434-5504:-1
so has part: feature:5434-5504:-1:region

position:5434:-1
position: 5434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5504:-1
position: 5504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5434-5504:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: COX1
so part of: sequence
location: 5506..7101
location: region:5506-7101:1
so has part: feature:5506-7101:1:exon
subclass of: SO_0000010

2763075
type: Gene
SIO_000068: ncbigene

position:5506:1
position: 5506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7101:1
position: 7101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5506-7101:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWDTPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTLHSTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISLVAVIMFLFILWEAFAAKREVMAVELTTTNVEWLHGCPPPYHTFEEPAFVQMQYTFTHPDLLNPNYYWRG
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5506..7101
location: region:5506-7101:1
so has part: feature:5506-7101:1:exon

NP_991004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5506-7101:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7093..7163)
location: region:7093-7163:-1
so has part: feature:7093-7163:-1:region

position:7093:-1
position: 7093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7163:-1
position: 7163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7093-7163:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Asp
so part of: sequence
location: 7169..7240
location: region:7169-7240:1
so has part: feature:7169-7240:1:region

position:7169:1
position: 7169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7240:1
position: 7240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7169-7240:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: COX2
so part of: sequence
location: 7255..7945
location: region:7255-7945:1
so has part: feature:7255-7945:1:exon
subclass of: SO_0000010

2763074
type: Gene
SIO_000068: ncbigene

position:7255:1
position: 7255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7945:1
position: 7945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7255-7945:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7945,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLTDKYTIDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYQDLGFDSYMIPTQDLAPGQFRLLETDHRMVVPMESPVRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7255..7945
location: region:7255-7945:1
so has part: feature:7255-7945:1:exon

NP_991005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7255-7945:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Lys
so part of: sequence
location: 7946..8020
location: region:7946-8020:1
so has part: feature:7946-8020:1:region

position:7946:1
position: 7946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8020:1
position: 8020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7946-8020:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ATP8
so part of: sequence
location: 8022..8189
location: region:8022-8189:1
so has part: feature:8022-8189:1:exon
subclass of: SO_0000010

2763076
type: Gene
SIO_000068: ncbigene

position:8022:1
position: 8022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8189:1
position: 8189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8022-8189:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPSPWFAILMFSWLMFLTTIPPKIMAHHFTNDPNTQSTEKPKPEPWNWPWY
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 8022..8189
location: region:8022-8189:1
so has part: feature:8022-8189:1:exon

NP_991006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8022-8189:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ATP6
so part of: sequence
location: 8180..8862
location: region:8180-8862:1
so has part: feature:8180-8862:1:exon
subclass of: SO_0000010

2763077
type: Gene
SIO_000068: ncbigene

position:8180:1
position: 8180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8862:1
position: 8862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8180-8862:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8861..8862,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMLSFFDQFASPTYLGIPLIALALSLPWILYPTPSNRWLNNRLLTLQAWFINRFTQQLLLPLNIGGHKWAMLFASLMIFLMTLNLLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTIALGHLLPEGTPAPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLFPMMPTVAILTSTVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8180..8862
location: region:8180-8862:1
so has part: feature:8180-8862:1:exon

NP_991007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8180-8862:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: COX3
so part of: sequence
location: 8863..9647
location: region:8863-9647:1
so has part: feature:8863-9647:1:exon
subclass of: SO_0000010

2763073
type: Gene
SIO_000068: ncbigene

position:8863:1
position: 8863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9647:1
position: 9647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8863-9647:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9646..9647,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTTLMTLGLILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGERKQAIQSLTLTIALGFYFTLLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAICLLRQVQYHFTSQHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8863..9647
location: region:8863-9647:1
so has part: feature:8863-9647:1:exon

NP_991008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8863-9647:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Gly
so part of: sequence
location: 9648..9719
location: region:9648-9719:1
so has part: feature:9648-9719:1:region

position:9648:1
position: 9648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9719:1
position: 9719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9719:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ND3
so part of: sequence
location: 9720..10068
location: region:9720-10068:1
so has part: feature:9720-10068:1:exon
subclass of: SO_0000010

2763068
type: Gene
SIO_000068: ncbigene

position:9720:1
position: 9720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10068:1
position: 10068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9720-10068:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10068,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLITTILTITSILSMVLLIVSFWLPQMNPDSEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLLSPTETFFWATTILTLLTLGLAYEWTQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9720..10068
location: region:9720-10068:1
so has part: feature:9720-10068:1:exon

NP_991009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9720-10068:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Arg
so part of: sequence
location: 10069..10138
location: region:10069-10138:1
so has part: feature:10069-10138:1:region

position:10069:1
position: 10069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10138:1
position: 10138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10069-10138:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ND4L
so part of: sequence
location: 10139..10435
location: region:10139-10435:1
so has part: feature:10139-10435:1:exon
subclass of: SO_0000010

2763070
type: Gene
SIO_000068: ncbigene

position:10139:1
position: 10139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10435:1
position: 10435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10139-10435:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFSSAFMLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQSDSTVSSTAPMLLLAFSACEASAGLALLVATSRTHGTDRLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10139..10435
location: region:10139-10435:1
so has part: feature:10139-10435:1:exon

NP_991010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10139-10435:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ND4
so part of: sequence
location: 10429..11809
location: region:10429-11809:1
so has part: feature:10429-11809:1:exon
subclass of: SO_0000010

2763071
type: Gene
SIO_000068: ncbigene

position:10429:1
position: 10429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11809:1
position: 11809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10429-11809:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11809,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILLPTLMLFPTIWLTPKKWLWTTTTAQSLMIAFSSLFWLKWASETGWSTSNTYMATDPLSTPLLVLTCWLLPLMILASQNHTMPEPTNRQRTYLTLLASLQALLIMAFSATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLILQKDTGTLSMLLTQYTNTTMPNSWGSKMWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMTAMLTPMTKELAYPFIALATWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERIHSRTLLLARGLQMILPLMAAWWFIMNLANLALPPLPNLMGELMIITSLMNWSLWTILLTGLGTLITASYSLYMFLMTQRGPTPNHIMALEPSHTREHLLMTLHLIPVLLLMLKPELMWGWCF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10429..11809
location: region:10429-11809:1
so has part: feature:10429-11809:1:exon

NP_991011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10429-11809:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-His
so part of: sequence
location: 11810..11878
location: region:11810-11878:1
so has part: feature:11810-11878:1:region

position:11810:1
position: 11810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11878:1
position: 11878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11810-11878:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11878..11946
location: region:11878-11946:1
so has part: feature:11878-11946:1:region

position:11946:1
position: 11946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11878-11946:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11948..12020
location: region:11948-12020:1
so has part: feature:11948-12020:1:region

position:11948:1
position: 11948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12020:1
position: 12020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11948-12020:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ND5
so part of: sequence
location: 12021..13862
location: region:12021-13862:1
so has part: feature:12021-13862:1:exon
subclass of: SO_0000010

2763066
type: Gene
SIO_000068: ncbigene

position:12021:1
position: 12021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13862:1
position: 13862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12021-13862:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHATTLMFTSSLLTILALLTYPLTTTMNPNPSQKTWATAQAKTSVQAAFYISLLPLFIFTDQGMETITTSWQWMNTMTFDINISFKFDQYSIIFMPVALYVTWSILEFASWYMHTDPNMNRFFKYLLMFLVAMMILVTANNMFQIFIGWEGVGIMSFLLIGWWYARADANTAALQAVIYNRVGDIGLIMSMAWLATSLNSWEMQQMFISSQDMDLTLPAMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMEDNQLALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHNLMPFTTSCMTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAIYSFRIIFFASMGTPRFLPMSPINENNPSVINPIKRLALGSIIAGLIITSNLPSTKTPIMTMPTTLKMSALMVTITGLLMAIELSSLTNKQFKTTPTMPTHNFSNMLGFFPMVIHRMTPKINLTMGQAVASQLIDQTWFEKVGPKGAASCQIPMIKLTNDLQRGMIKTYLSIFLLTTALITISFTLH
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 12021..13862
location: region:12021-13862:1
so has part: feature:12021-13862:1:exon

NP_991012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12021-13862:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: ND6
so part of: sequence
location: complement(13859..14380)
location: region:13859-14380:-1
so has part: feature:13859-14380:-1:exon
subclass of: SO_0000010

2763069
type: Gene
SIO_000068: ncbigene

position:13859:-1
position: 13859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14380:-1
position: 14380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13859-14380:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MAYFTFLFLVGLVLGFVAVASNPAPYFAALGLVVVAAIGCGMLASHGGSFLSLILFLIYLGGMLVVFVYSAALAAEPYPESWGDWSVLGYVVVYLFSVGLVGGWLSFGWYGYSWVVADELEGFSVLRGDYSGVSLMYSLGGGMLVVCGWVLLLALFVVLELTRGLSRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13859..14380)
location: region:13859-14380:-1
so has part: feature:13859-14380:-1:exon

NP_991013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13859-14380:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Glu
so part of: sequence
location: complement(14381..14449)
location: region:14381-14449:-1
so has part: feature:14381-14449:-1:region

position:14381:-1
position: 14381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14449:-1
position: 14449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14381-14449:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 118141
gene: CYTB
so part of: sequence
location: 14455..15595
location: region:14455-15595:1
so has part: feature:14455-15595:1:exon
subclass of: SO_0000010

2763072
type: Gene
SIO_000068: ncbigene

position:14455:1
position: 14455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15595:1
position: 15595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14455-15595:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118141
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15595,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANLRKTHPLLKIANDALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNIHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAVTVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVILLMSLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPILHTSKQRGLTFRPITQFLFWTLVADVVVLTWIGGMPVEHPFIIIGQVASVLYFMLFLILTPLAGLVENKMLKWN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14455..15595
location: region:14455-15595:1
so has part: feature:14455-15595:1:exon

NP_991014.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14455-15595:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Thr
so part of: sequence
location: 15597..15669
location: region:15597-15669:1
so has part: feature:15597-15669:1:region

position:15597:1
position: 15597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15669:1
position: 15669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15597-15669:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 118141
product: tRNA-Pro
so part of: sequence
location: complement(15682..15751)
location: region:15682-15751:-1
so has part: feature:15682-15751:-1:region

position:15682:-1
position: 15682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15751:-1
position: 15751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15682-15751:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 118141
so part of: sequence
location: 15752..>16412
location: region:15752-16412:1
so has part: feature:15752-16412:1:region

position:15752:1
position: 15752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15752-16412:1:region