Methanobacterium congolense isolate Buetzberg plasmid II, complete sequence.
type: Entry
definition: Methanobacterium congolense isolate Buetzberg plasmid II, complete sequence.
sequence version: NZ_LT607757.1
sequence date: 2022-12-24
sequence: sequence
division: CON
label: NZ_LT607757.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA4378819
keyword: RefSeq
source: Methanobacterium congolense
organism: Methanobacterium congolense
taxonomy: Archaea; Euryarchaeota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLT607757.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 04:05:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,396\nCDSs (total) :: 2,338\nGenes (coding) :: 2,332\nCDSs (with protein) :: 2,332\nGenes (RNA) :: 58\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 6\nCDSs (without protein) :: 6\nPseudo Genes (ambiguous residues) :: 0 of 6\nPseudo Genes (frameshifted) :: 4 of 6\nPseudo Genes (incomplete) :: 2 of 6\nPseudo Genes (internal stop) :: 0 of 6\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18118
topology: circular
so has quality: SO_0000988
location: 1..18118
location: region:1-18118:1
RO_0002162: 118062

NZ_LT607757
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA4378819
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Wibberg, D.
journal: Submitted (12-AUG-2016) CEBITEC, Genome Research of Industrial Microorganisms (GRIM), Universitaetsstrasse 27, 33615, NRW, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18118:1
position: 18118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18118:1:source
so part of: sequence
organism: Methanobacterium congolense
mol type: genomic DNA
isolate: Buetzberg
isolation source: biogas sludge
plasmid: II
country: Germany
collection date: 2014

118062
type: Taxonomy
SIO_000068: taxonomy

MCBB_RS11720
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11720
old locus tag: MCBB_PMCBBP0024
so part of: sequence
location: complement(join(16964..18118,1..141))
location: region:1-18118:-1
so has part: feature:1-141:-1:exon
so has part: feature:16964-18118:-1:exon
subclass of: SO_0000010

30413210
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18118:-1
position: 18118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-141:-1:exon

position:141:-1
position: 141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16964-18118:-1:exon

position:16964:-1
position: 16964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MCBB_RS11720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11720
old locus tag: MCBB_PMCBBP0024
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DNA methyltransferase
translation: MQFKSSTININKKEEDSTWDFKGSDTKYSNHGIHNYPAMMIPQIARRLIEEYGKNASVLLDPFMGSGTALLEAKLHSNFKEAYGVDINPLALLVSKVKTTPIDDKLLFQEYENIINRFYKAKKTLNENIETPDFFNIDYWFKKEVKLDLTLLKKSIESIHLDDTKLENDVKDFFNIVFSNVTRTVSNTRNGEYKLYRIKKETLEDYNPDTFLEFKKQAKTNIKKMSEFNKQFKSCKVNILDEDTRYKTSIPSNHVDIVVTSPPYGDSRTTVAYGQFSRLSLQWLGFEKKEVSAIDKHGLGGIPTADLDNTLNSPLLQEIIDKIAQLDEKRVKDVLSFYKDFYQCVIEIDRVMKTGGFLCFVVGNRTVKGVQIPTDDIIIELFKSKNEYKHHKTIIRNIPSKRLPKRNSPTNVKGKTLSTMNHEYIVILEKI
SIO_010081: MCBB_RS11720
subclass of: SO_0000673
so part of: MCBB_RS11720
location: complement(join(16964..18118,1..141))
location: region:1-18118:-1
so has part: feature:1-141:-1:exon
so has part: feature:16964-18118:-1:exon

WP_071908121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-141:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16964-18118:-1:exon

MCBB_RS11725
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11725
old locus tag: MCBB_PMCBBP0001
so part of: sequence
location: complement(110..379)
location: region:110-379:-1
so has part: feature:110-379:-1:exon
subclass of: SO_0000010

30413211
type: Gene
SIO_000068: ncbigene

position:110:-1
position: 110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:379:-1
position: 379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110-379:-1:exon

MCBB_RS11725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11725
old locus tag: MCBB_PMCBBP0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019265614.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MEEKLIKAVSHIKASKYRYKIMISISNKIKLPSEISRDVGIRLNHVSAVLNDLKSHELVECLNEDAKKGRLYKLTKLGKNAIQIIDDQH
SIO_010081: MCBB_RS11725
subclass of: SO_0000673
so part of: MCBB_RS11725
location: complement(110..379)
location: region:110-379:-1
so has part: feature:110-379:-1:exon

WP_071908122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:110-379:-1:exon

MCBB_RS11730
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11730
old locus tag: MCBB_PMCBBP0002
so part of: sequence
location: 579..845
location: region:579-845:1
so has part: feature:579-845:1:exon
subclass of: SO_0000010

30413212
type: Gene
SIO_000068: ncbigene

position:579:1
position: 579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:845:1
position: 845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:579-845:1:exon

MCBB_RS11730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11730
old locus tag: MCBB_PMCBBP0002
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSTLEKFKKIYTGWEIRFKVELTDKEFEKCNMEPVEGVGDYSIELQGKNIIFECIFDKGELKKDETIEERLTLIKKDIENLAQSCLN
SIO_010081: MCBB_RS11730
subclass of: SO_0000673
so part of: MCBB_RS11730
location: 579..845
location: region:579-845:1
so has part: feature:579-845:1:exon

WP_071908101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:579-845:1:exon

MCBB_RS11735
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11735
old locus tag: MCBB_PMCBBP0004
so part of: sequence
location: 1663..2259
location: region:1663-2259:1
so has part: feature:1663-2259:1:exon
subclass of: SO_0000010

30413213
type: Gene
SIO_000068: ncbigene

position:1663:1
position: 1663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2259:1
position: 2259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1663-2259:1:exon

MCBB_RS11735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11735
old locus tag: MCBB_PMCBBP0004
inference: COORDINATES: protein motif:HMM:NF024098.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3800 domain-containing protein
translation: MDESGDLGPKGSKYFVIAALAVEDPKKLDRIIKNMRRNKFKKELKGSHEIKANSSSTAVKEYMIKKLNKVPNATIYCIIFNKEHYLSNSKNYMDKNELYDCVAGALAREITLRDNTIIRIDKSKGKQFLRKRFDSYFKKNLNTNNRKVEIYHSESHAWSGLQFADIIAGSYFQKFEHDDGICVDLLDIKCNLHELKRK
SIO_010081: MCBB_RS11735
subclass of: SO_0000673
so part of: MCBB_RS11735
location: 1663..2259
location: region:1663-2259:1
so has part: feature:1663-2259:1:exon

WP_171899151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1663-2259:1:exon

MCBB_RS11740
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11740
old locus tag: MCBB_PMCBBP0006
so part of: sequence
location: 3373..3666
location: region:3373-3666:1
so has part: feature:3373-3666:1:exon
subclass of: SO_0000010

30413214
type: Gene
SIO_000068: ncbigene

position:3373:1
position: 3373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3666:1
position: 3666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3373-3666:1:exon

MCBB_RS11740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11740
old locus tag: MCBB_PMCBBP0006
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MINGNFMITSASGDQLVIEKEDVSRLLYDISGNLSMQIQGFNVNSIYSFLKTLEGTKLKIKGLYQDRKDLSGYYTLNPLAVEGESDKRLKLNLQRNV
SIO_010081: MCBB_RS11740
subclass of: SO_0000673
so part of: MCBB_RS11740
location: 3373..3666
location: region:3373-3666:1
so has part: feature:3373-3666:1:exon

WP_071908103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3373-3666:1:exon

MCBB_RS11745
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11745
old locus tag: MCBB_PMCBBP0007
so part of: sequence
location: complement(3702..4847)
location: region:3702-4847:-1
so has part: feature:3702-4847:-1:exon
subclass of: SO_0000010

30413215
type: Gene
SIO_000068: ncbigene

position:3702:-1
position: 3702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4847:-1
position: 4847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3702-4847:-1:exon

MCBB_RS11745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11745
old locus tag: MCBB_PMCBBP0007
inference: COORDINATES: protein motif:HMM:NF013658.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoadenosine phosphosulfate reductase family protein
translation: MLHGPGGTPIKDLESAALQLVTEKCDPESSVVMFSGGKDSLVALDIASKAGVEHAVFIDSDLEFSISRDYVRKMKKFYDIEFVQPVNDFFEFCERISPPSKRLKWCCKVMKLALMMDYGIKNQKFTFLTGLRSDESRRRSKYTEIVSDPFLFSNPRYTFKQVNPVLLWSEREIWQYIHENELPFNPLYKLGSPRVGCWCCPLASRQEWDLARDLEPEKMKKLKKLIRDFSLKLPARYRHKYVKNGWKSFAFKYHKNPVMKMSIPNKTYTLVARDFYLDKVEDLLFILSSKFQRRSGSLSFDLDVDLQKQQIRMLLEKSLNCVGCGVCLVLCPVGALYLDPKIKVDSSKCVGCFACCKRVDSKLKMGCVARNYRMSRNTIEF
SIO_010081: MCBB_RS11745
subclass of: SO_0000673
so part of: MCBB_RS11745
location: complement(3702..4847)
location: region:3702-4847:-1
so has part: feature:3702-4847:-1:exon

WP_071908104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3702-4847:-1:exon

MCBB_RS11750
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11750
old locus tag: MCBB_PMCBBP0008
so part of: sequence
location: complement(4816..6066)
location: region:4816-6066:-1
so has part: feature:4816-6066:-1:exon
subclass of: SO_0000010

30413216
type: Gene
SIO_000068: ncbigene

position:4816:-1
position: 4816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6066:-1
position: 6066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4816-6066:-1:exon

MCBB_RS11750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11750
old locus tag: MCBB_PMCBBP0008
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRSDLFTCAFLGLLIFSLFFASVVEAASYPDLSVIGVGPWDASVNGKYVSGYRVAVANYGSGPSKNATLEFYVRTYDGKTLNRNFTVPAMPAGSARSLKFSMCNGTDGSFKNGYVIVNRKKAFIERSYKNNARNFGLKETMLLSSNKTVTETYKTLQTGTLQTWTGTTYNYTSPASGKTGISTMRVRINAGGARDINGCKVTAPIPGAMHENVTFSFGGDDAPDTSGPTSWNDSGVTFYSRYYITRLDYAEITVTGENLELKNVFTEPITLYGRYYRPWPIDNFEFVEITTSNPRTVQETYSEPTIVYKNSTYVGSSVSSYTVHNQNVTGLKVLGDPRGLYVAGWFIQPQGNFANVTAIYGTNSLPAGSAVSGYWGVRQSFKGSNSVGFQINGTDLKGFSNFKTFGFAPWTWRDTY
SIO_010081: MCBB_RS11750
subclass of: SO_0000673
so part of: MCBB_RS11750
location: complement(4816..6066)
location: region:4816-6066:-1
so has part: feature:4816-6066:-1:exon

WP_071908105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4816-6066:-1:exon

MCBB_RS11755
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11755
old locus tag: MCBB_PMCBBP0009
so part of: sequence
location: complement(6063..7133)
location: region:6063-7133:-1
so has part: feature:6063-7133:-1:exon
subclass of: SO_0000010

30413217
type: Gene
SIO_000068: ncbigene

position:6063:-1
position: 6063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7133:-1
position: 7133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6063-7133:-1:exon

MCBB_RS11755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11755
old locus tag: MCBB_PMCBBP0009
inference: COORDINATES: protein motif:HMM:NF016214.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MRFYTHIAAGLLLYTLLVWIFALPYTVVGVLVVVLFSVLPDLVDRVTGEHRGWGHSAIWLIPVAALLFINPTLGAAFFAAFSMHILLDAVTKKGVPFLYPFSKTRLVMPKKEKSRIQTGSKQETALCVVILLLLIPMTYFVLAGVPGDWFSSDYAKYNKTGNNSTSKTVNPYSNLRNSTGYSSGYGTGSLGSLLTKNLKNSGSSSSSGSSGNKTSSTNSTGSTSNSDNLDQGLLDWLNQDLNNNNNQTNNNQNTTDNTNNNQQQTDEFGNSLTDYLIGNSEPIAAGGEADSDEDSASESLFSDLRSQFENLAEGVAFESNMTQSDQSLFDYDYSSNPDADDTGEESSIIDQLGLML
SIO_010081: MCBB_RS11755
subclass of: SO_0000673
so part of: MCBB_RS11755
location: complement(6063..7133)
location: region:6063-7133:-1
so has part: feature:6063-7133:-1:exon

WP_071908106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6063-7133:-1:exon

MCBB_RS11760
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11760
old locus tag: MCBB_PMCBBP0010
so part of: sequence
location: complement(7134..7367)
location: region:7134-7367:-1
so has part: feature:7134-7367:-1:exon
subclass of: SO_0000010

30413218
type: Gene
SIO_000068: ncbigene

position:7134:-1
position: 7134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7367:-1
position: 7367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7134-7367:-1:exon

MCBB_RS11760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11760
old locus tag: MCBB_PMCBBP0010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKEKMKLIFNFDEPQQVNSLEDDVIFAVFDSLELAVSNFGKETVLQALNGVEVPTSLELPEKLQVVEQMEALPGYQ
SIO_010081: MCBB_RS11760
subclass of: SO_0000673
so part of: MCBB_RS11760
location: complement(7134..7367)
location: region:7134-7367:-1
so has part: feature:7134-7367:-1:exon

WP_145976057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7134-7367:-1:exon

MCBB_RS11765
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11765
old locus tag: MCBB_PMCBBP0011
so part of: sequence
location: complement(7398..7964)
location: region:7398-7964:-1
so has part: feature:7398-7964:-1:exon
subclass of: SO_0000010

30413219
type: Gene
SIO_000068: ncbigene

position:7398:-1
position: 7398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7964:-1
position: 7964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7398-7964:-1:exon

MCBB_RS11765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11765
old locus tag: MCBB_PMCBBP0011
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVWRKNVFNYVEIISESYITVYLNELSPIKSKLIQLIASIQEIRDRKVPESSQLQRMTIEELKEMLFKKSSGIKVVVVFNHFERLTPSTARFWLSVSGHERIVFLGSVCGNFKKEAYGFYQAFEVVNQKVMKSEGSGSEMDITIPFILIVGAFVFICFLKVSLIGSVILISALWFAFLVIRTLLYLIR
SIO_010081: MCBB_RS11765
subclass of: SO_0000673
so part of: MCBB_RS11765
location: complement(7398..7964)
location: region:7398-7964:-1
so has part: feature:7398-7964:-1:exon

WP_145976058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7398-7964:-1:exon

MCBB_RS11770
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
gene: hjc
locus tag: MCBB_RS11770
old locus tag: MCBB_PMCBBP0012
so part of: sequence
location: complement(8003..8434)
location: region:8003-8434:-1
so has part: feature:8003-8434:-1:exon
subclass of: SO_0000010

30413220
type: Gene
SIO_000068: ncbigene

position:8003:-1
position: 8003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8434:-1
position: 8434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8434:-1:exon

MCBB_RS11770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
gene: hjc
locus tag: MCBB_RS11770
old locus tag: MCBB_PMCBBP0012
EC number: 3.1.21.10
inference: COORDINATES: protein motif:HMM:NF040854.1
GO function: GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Holliday junction resolvase Hjc
translation: MINKNEGIAYEQELVKMFKDVDFTACRLPGSSARSPDIIAGDRNSVFVIEVKTTRDSRVKIRKSQIHTLLKFAHDLNCEPRLALRFIDRDISWHIVKPNALQVHEKSFSIDYNAACLKGLEFSELVSNELQKRLECNQNNLTV
SIO_010081: MCBB_RS11770
subclass of: SO_0000673
so part of: MCBB_RS11770
location: complement(8003..8434)
location: region:8003-8434:-1
so has part: feature:8003-8434:-1:exon

WP_071908109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8434:-1:exon

MCBB_RS11775
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11775
old locus tag: MCBB_PMCBBP0013
so part of: sequence
location: complement(8431..9060)
location: region:8431-9060:-1
so has part: feature:8431-9060:-1:exon
subclass of: SO_0000010

30413221
type: Gene
SIO_000068: ncbigene

position:8431:-1
position: 8431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9060:-1
position: 9060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8431-9060:-1:exon

MCBB_RS11775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11775
old locus tag: MCBB_PMCBBP0013
inference: COORDINATES: protein motif:HMM:NF013961.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transglutaminase domain-containing protein
translation: MFKKLTFLFVCCFFGIVSFALPSHAAQVSEIEIPDDQPDPDGSSFSKMQPGEVMIDDTAYMDRTMLDQSYPSSYTKDYNYQRGSVRISDSRLSNLRGRQGLKTLAFYIQQNFDHKAGGARTANGVVETGSGDCWGLSDFTLHVLLRNGYTVRLLQGQSSASSRHRWLEVQLENGSWTTFDPSLVTEKYHFKPYWHRCAVKTAVLGVYYP
SIO_010081: MCBB_RS11775
subclass of: SO_0000673
so part of: MCBB_RS11775
location: complement(8431..9060)
location: region:8431-9060:-1
so has part: feature:8431-9060:-1:exon

WP_071908110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8431-9060:-1:exon

MCBB_RS12210
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS12210
old locus tag: MCBB_PMCBBP0014
so part of: sequence
location: complement(9094..9660)
location: region:9094-9660:-1
so has part: feature:9094-9660:-1:exon
subclass of: SO_0000010

60510477
type: Gene
SIO_000068: ncbigene

position:9094:-1
position: 9094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9660:-1
position: 9660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9094-9660:-1:exon

MCBB_RS12210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS12210
old locus tag: MCBB_PMCBBP0014
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLNEIPRVPLLVGLLILALVAGVAGYSYMSGNSSQQAAVPAAAEQPLTDEQMKENLENPTADMNASADEVLDSDSIDSGTVSEDGTYTPVKKSTKKSVSAVAIVKKPNSHPSKPANPTNPTKPSNPTNPTNPTEPQNPQPGEGDEGYYSDEPWDPLEPPAENPDGEGDYGGDDNPEEDNGGQGDLMP
SIO_010081: MCBB_RS12210
subclass of: SO_0000673
so part of: MCBB_RS12210
location: complement(9094..9660)
location: region:9094-9660:-1
so has part: feature:9094-9660:-1:exon

WP_071908111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9094-9660:-1:exon

MCBB_RS11785
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11785
old locus tag: MCBB_PMCBBP0015
so part of: sequence
location: complement(9744..10559)
location: region:9744-10559:-1
so has part: feature:9744-10559:-1:exon
subclass of: SO_0000010

30413223
type: Gene
SIO_000068: ncbigene

position:9744:-1
position: 9744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10559:-1
position: 10559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9744-10559:-1:exon

MCBB_RS11785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11785
old locus tag: MCBB_PMCBBP0015
inference: COORDINATES: protein motif:HMM:NF024753.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PQQ-binding-like beta-propeller repeat protein
translation: MISKRHGILFLCVLIATMSTGFAFQQAWTSDTGQPTKITGDGQNILVATASSVKEIDPTGAAVWSQDIALSNATALKAGKYVFLGTGNNAVALNKADGTTKWTKTDALGAAQPVKYVFVKGSCVIFSNNEKAIVLDRETGNNLTAVQDAPTVSEPSVFGGYYLAATSSGVTAYKGFMLPDLRVKSITKASDKTTAKLENIGLSDASKVLVKFVVRKTDGTYRTIHINGGTIAAGQSKDIVINGAFSRGYVIVDPYYSIGELNEGNNQRYFS
SIO_010081: MCBB_RS11785
subclass of: SO_0000673
so part of: MCBB_RS11785
location: complement(9744..10559)
location: region:9744-10559:-1
so has part: feature:9744-10559:-1:exon

WP_071908112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9744-10559:-1:exon

MCBB_RS11790
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11790
old locus tag: MCBB_PMCBBP0016
so part of: sequence
location: 10715..10897
location: region:10715-10897:1
so has part: feature:10715-10897:1:exon
subclass of: SO_0000010

30413224
type: Gene
SIO_000068: ncbigene

position:10715:1
position: 10715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10897:1
position: 10897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10715-10897:1:exon

MCBB_RS11790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11790
old locus tag: MCBB_PMCBBP0016
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKVANYIVYQMRGTGKPRIYVPKDWMEAEGIGQYDVIKVSFEVLERYKGKKTEEENEDD
SIO_010081: MCBB_RS11790
subclass of: SO_0000673
so part of: MCBB_RS11790
location: 10715..10897
location: region:10715-10897:1
so has part: feature:10715-10897:1:exon

WP_071908113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10715-10897:1:exon

MCBB_RS11795
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11795
old locus tag: MCBB_PMCBBP0017
so part of: sequence
location: 11080..11538
location: region:11080-11538:1
so has part: feature:11080-11538:1:exon
subclass of: SO_0000010

30413225
type: Gene
SIO_000068: ncbigene

position:11080:1
position: 11080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11538:1
position: 11538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11080-11538:1:exon

MCBB_RS11795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11795
old locus tag: MCBB_PMCBBP0017
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVAEAEVKCYKRKQSKKSSKSTEKEYETMQCLINLKKDHPFEKGELVLVTDKDEYYKMVGDHEKQVQDLTESHQKEIEDLVREHKGQVQELKAEINKLENDKNFTEKRLDKAYEEISEAQNEVDRLRNRGFFDYLKTAFFKNDKALKEGEK
SIO_010081: MCBB_RS11795
subclass of: SO_0000673
so part of: MCBB_RS11795
location: 11080..11538
location: region:11080-11538:1
so has part: feature:11080-11538:1:exon

WP_071908114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11080-11538:1:exon

MCBB_RS11800
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11800
old locus tag: MCBB_PMCBBP0018
so part of: sequence
location: complement(11626..12084)
location: region:11626-12084:-1
so has part: feature:11626-12084:-1:exon
subclass of: SO_0000010

30413226
type: Gene
SIO_000068: ncbigene

position:11626:-1
position: 11626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12084:-1
position: 12084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11626-12084:-1:exon

MCBB_RS11800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11800
old locus tag: MCBB_PMCBBP0018
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTLSVRGINENVKKQFEKAVVQKYGKKHTVMGLEVEKALVFYLTNGKSVDPGDLEMEPQAPVAPVEKKPAHTHNHSGDDRGNITMFGKAFVDNFGDNEQVSFKDIRKLATVTQGVIDERSIQKRVNYLVDLDYIKPINQNVFEVKIEKSGF
SIO_010081: MCBB_RS11800
subclass of: SO_0000673
so part of: MCBB_RS11800
location: complement(11626..12084)
location: region:11626-12084:-1
so has part: feature:11626-12084:-1:exon

WP_071908115.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11626-12084:-1:exon

MCBB_RS11805
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11805
old locus tag: MCBB_PMCBBP0019
so part of: sequence
location: complement(12460..12657)
location: region:12460-12657:-1
so has part: feature:12460-12657:-1:exon
subclass of: SO_0000010

30413227
type: Gene
SIO_000068: ncbigene

position:12460:-1
position: 12460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12657:-1
position: 12657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12460-12657:-1:exon

MCBB_RS11805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11805
old locus tag: MCBB_PMCBBP0019
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVYDYISAPSLKLFVKMLNERLNDDWTPIWNTFNYEVGDEKSASAYTVIVEKDVKQPIAEWVADL
SIO_010081: MCBB_RS11805
subclass of: SO_0000673
so part of: MCBB_RS11805
location: complement(12460..12657)
location: region:12460-12657:-1
so has part: feature:12460-12657:-1:exon

WP_071908116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12460-12657:-1:exon

MCBB_RS11810
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11810
so part of: sequence
location: 14735..15013
location: region:14735-15013:1
so has part: feature:14735-15013:1:exon
subclass of: SO_0000010

30413228
type: Gene
SIO_000068: ncbigene

position:14735:1
position: 14735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15013:1
position: 15013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14735-15013:1:exon

MCBB_RS11810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11810
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFLVQLEGFSVLFVLFRMKVVLVGCKDFLGGSLEAREVLILTMLLPFHDLICNIRAPNLHPPPTIPTARGKLGAFGPIYLIRVRGSGKSLFL
SIO_010081: MCBB_RS11810
subclass of: SO_0000673
so part of: MCBB_RS11810
location: 14735..15013
location: region:14735-15013:1
so has part: feature:14735-15013:1:exon

WP_071908117.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14735-15013:1:exon

MCBB_RS12200
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS12200
so part of: sequence
location: complement(15235..15390)
location: region:15235-15390:-1
so has part: feature:15235-15390:-1:exon
subclass of: SO_0000010

55571414
type: Gene
SIO_000068: ncbigene

position:15235:-1
position: 15235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15390:-1
position: 15390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15235-15390:-1:exon

MCBB_RS12200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS12200
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISKIKLTDVILVKEFVNELDSIANKYCVQRDELIEMVNSIDQIRVPCVKP
SIO_010081: MCBB_RS12200
subclass of: SO_0000673
so part of: MCBB_RS12200
location: complement(15235..15390)
location: region:15235-15390:-1
so has part: feature:15235-15390:-1:exon

WP_171899152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15235-15390:-1:exon

MCBB_RS11815
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11815
old locus tag: MCBB_PMCBBP0020
so part of: sequence
location: complement(15374..15589)
location: region:15374-15589:-1
so has part: feature:15374-15589:-1:exon
subclass of: SO_0000010

30413229
type: Gene
SIO_000068: ncbigene

position:15374:-1
position: 15374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15589:-1
position: 15589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15374-15589:-1:exon

MCBB_RS11815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11815
old locus tag: MCBB_PMCBBP0020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRGCKHKDKCKVCKKCSACHAGPFEIDEECEDCLACEKIGRLTFRAPAAVRPQVVHYPSVEMEVINSDFKN
SIO_010081: MCBB_RS11815
subclass of: SO_0000673
so part of: MCBB_RS11815
location: complement(15374..15589)
location: region:15374-15589:-1
so has part: feature:15374-15589:-1:exon

WP_071908118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15374-15589:-1:exon

MCBB_RS11820
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11820
old locus tag: MCBB_PMCBBP0022
so part of: sequence
location: complement(15749..15994)
location: region:15749-15994:-1
so has part: feature:15749-15994:-1:exon
subclass of: SO_0000010

30413230
type: Gene
SIO_000068: ncbigene

position:15749:-1
position: 15749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15994:-1
position: 15994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15749-15994:-1:exon

MCBB_RS11820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11820
old locus tag: MCBB_PMCBBP0022
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEEEIKKAINELERDTALPGRFNFVHRAYFERIAYNKLKLLAFVEKSSRAALIRDLTSRGIREYEKEHGNLVELAREALKK
SIO_010081: MCBB_RS11820
subclass of: SO_0000673
so part of: MCBB_RS11820
location: complement(15749..15994)
location: region:15749-15994:-1
so has part: feature:15749-15994:-1:exon

WP_071908119.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15749-15994:-1:exon

MCBB_RS11825
type: Gene
subclass of: SO_0000704
RO_0002162: 118062
locus tag: MCBB_RS11825
old locus tag: MCBB_PMCBBP0023
so part of: sequence
location: 16221..16967
location: region:16221-16967:1
so has part: feature:16221-16967:1:exon
subclass of: SO_0000010

30413231
type: Gene
SIO_000068: ncbigene

position:16221:1
position: 16221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16967:1
position: 16967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16221-16967:1:exon

MCBB_RS11825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 118062
locus tag: MCBB_RS11825
old locus tag: MCBB_PMCBBP0023
inference: COORDINATES: protein motif:HMM:NF026853.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MvaI/BcnI family restriction endonuclease
translation: MNNGVLEGFKKDFSVIKEKGWVESHRKHDTGIGKTFEDLIGIVENNNYLADYQGILELKASRILSESMVTLFTKAPQPRGINSLMREKYGNPDPKADGLKTIHTTFSALKFNNFVKNYGFKLEINESERRIYILVKNLKTGEIEDTDIYYEFDTLKTIIENKCKYIAHINAESKKLDGKEYFRFKECYLLTGLTFEKFIQLIKEGLILYDIRIGVFRSGKNKGKTHDHGSGFRFKKNNLEEIFDFEKI
SIO_010081: MCBB_RS11825
subclass of: SO_0000673
so part of: MCBB_RS11825
location: 16221..16967
location: region:16221-16967:1
so has part: feature:16221-16967:1:exon

WP_071908120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16221-16967:1:exon