Mycolicibacterium frederiksbergense strain LB 501T plasmid unnamed3.
Mycolicibacterium frederiksbergense (Mycobacterium frederiksbergense)
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium.
Draft, Whole-Genome Sequence of the Anthracene-degrading Mycobacterium frederiksbergense LB501T, Isolated from a Polycyclic Aromatic Hydrocarbon (PAH)-Contaminated Soil
Submitted (03-APR-2019) Laboratory of Bioengineering, Catholic University of Louvain, Place Croix du Sud, 2/19, L7.05.19, Louvain-la-Neuve 1348, Belgium
REFSEQ INFORMATION: The reference sequence is identical to\nCP038796.1.\nBacteria and source DNA available from Catholic University of\nLouvain Earth & Life Institute Laboratory of Bioengineering Place\nCroix du Sud, 2/19, L7.05.19 1348 Louvain-la-Neuve Belgium.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 194.0x\nSequencing Technology :: PacBio RSII; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/16/2023 12:10:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,537\nCDSs (total) :: 6,482\nGenes (coding) :: 6,281\nCDSs (with protein) :: 6,281\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 201\nCDSs (without protein) :: 201\nPseudo Genes (ambiguous residues) :: 0 of 201\nPseudo Genes (frameshifted) :: 118 of 201\nPseudo Genes (incomplete) :: 115 of 201\nPseudo Genes (internal stop) :: 14 of 201\nPseudo Genes (multiple problems) :: 40 of 201\n##Genome-Annotation-Data-END##
polycyclic aromatic hydrocarbon (PAH)-contaminated soil
COORDINATES: protein motif:HMM:NF020897.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611569.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014817062.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040041.1
COORDINATES: similar to AA sequence:RefSeq:WP_013470989.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013470154.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005208105.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: protein motif:HMM:NF024991.2