Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.01, complete sequence.
Allocoleopsis franciscana PCC 7113 (Microcoleus sp. PCC 7113)
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Coleofasciculaceae; Allocoleopsis; Allocoleopsis franciscana.
Finished plasmid 1 of genome of Microcoleus sp. PCC 7113
Submitted (01-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003631.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4089897\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\n Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Microcoleus sp. PCC 7113\ncollection_date :: 1971\nlat_lon :: 37.774 122.419\ndepth :: Missing\nalt_elev :: Missing\ncountry :: USA\nenvironment :: Soil\nnum_replicons :: 9\nref_biomaterial :: PCC 7113, ATCC 29206\nbiotic_relationship :: Free living\ntrophic_level :: Chemoheterotroph\nrel_to_oxygen :: Anaerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi05876\nType Strain :: No\nFunding Program :: DOE-GEBA 2009\nGene Calling Method :: GenePrimp, Prodigal 1.4\nIsolation Site :: Soil, orchid house, San Francisco, USA, 1971\nMotility :: Motile\nTemperature Range :: Mesophile\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:26:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,773\nCDSs (total) :: 6,686\nGenes (coding) :: 6,571\nCDSs (with protein) :: 6,571\nGenes (RNA) :: 87\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 4\nPseudo Genes (total) :: 115\nCDSs (without protein) :: 115\nPseudo Genes (ambiguous residues) :: 0 of 115\nPseudo Genes (frameshifted) :: 37 of 115\nPseudo Genes (incomplete) :: 84 of 115\nPseudo Genes (internal stop) :: 3 of 115\nPseudo Genes (multiple problems) :: 9 of 115\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Soil, orchid house, San Francisco, USA, 1971
reference strain of Allocoleopsis franciscana
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015117855.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_017307976.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496557.1
COORDINATES: similar to AA sequence:RefSeq:WP_006102494.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864650.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364353.1
COORDINATES: similar to AA sequence:RefSeq:WP_017716869.1
COORDINATES: similar to AA sequence:RefSeq:WP_010996261.1
COORDINATES: similar to AA sequence:RefSeq:WP_006100877.1
COORDINATES: similar to AA sequence:RefSeq:WP_015151902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015147440.1
nucleoside triphosphate pyrophosphohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012599389.1
putative DNA base hypermodification protein
COORDINATES: similar to AA sequence:RefSeq:WP_015147442.1
COORDINATES: similar to AA sequence:RefSeq:WP_015147443.1
COORDINATES: similar to AA sequence:RefSeq:WP_006519441.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015147445.1
COORDINATES: similar to AA sequence:RefSeq:WP_002795862.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017310381.1
COORDINATES: similar to AA sequence:RefSeq:WP_016862208.1
COORDINATES: similar to AA sequence:RefSeq:WP_006513253.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307357.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015211604.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786344.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786343.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612210.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009786341.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015172853.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015211599.1
COORDINATES: similar to AA sequence:RefSeq:WP_015181193.1
COORDINATES: protein motif:HMM:NF011510.0
COORDINATES: protein motif:HMM:NF011539.0
bifunctional 3'-5' exonuclease/DNA polymerase
COORDINATES: similar to AA sequence:RefSeq:WP_015211648.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211649.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_008049405.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_015172776.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186783.1
COORDINATES: similar to AA sequence:RefSeq:WP_015170530.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
30S ribosomal protein S6--L-glutamate ligase
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: protein motif:HMM:NF017386.2
COORDINATES: similar to AA sequence:RefSeq:WP_015120884.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869176.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF014589.2
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:TIGR00663.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126641.1
COORDINATES: protein motif:HMM:NF018601.2
COORDINATES: similar to AA sequence:RefSeq:WP_015208570.1
COORDINATES: similar to AA sequence:RefSeq:WP_015208569.1
COORDINATES: similar to AA sequence:RefSeq:WP_009557221.1
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_019496582.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496579.1
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: similar to AA sequence:RefSeq:WP_019497805.1
SpvB/TcaC N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013730916.1
COORDINATES: similar to AA sequence:RefSeq:WP_020878800.1
neuraminidase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020476702.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211464.1
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_017740091.1
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: similar to AA sequence:RefSeq:WP_015117860.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015198319.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307972.1
type IV secretion system DNA-binding domain-containing protein