Crinalium epipsammum PCC 9333 plasmid pCRI9333.08, complete sequence.
type: Entry
definition: Crinalium epipsammum PCC 9333 plasmid pCRI9333.08, complete sequence.
sequence version: NC_019756.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_019756.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02261349
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Crinalium epipsammum PCC 9333
organism: Crinalium epipsammum PCC 9333
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Gomontiellaceae; Crinalium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP003628.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087140\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\nContacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Crinalium epipsammum PCC 9333\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Missing\nnum_replicons :: 9\nref_biomaterial :: PCC 9333\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04308\nFunding Program :: DOE-GEBA 2009\nGene Calling Method :: Prodigal, GenePRIMP\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END…

sequence
subclass of: SO_0000155
sequence length: 4488
topology: circular
so has quality: SO_0000988
location: 1..4488
location: region:1-4488:1
RO_0002162: 1173022

NC_019756
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02261349
type: BioSample
SIO_000068: biosample

1
title: Finished plasmid 8 of genome of Crinalium epipsammum PCC 9333
author: Gugger, M.
author: Coursin, T.
author: Rippka, R.
author: Tandeau De Marsac, N.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Davenport, K.
author: Daligault, H.
author: Erkkila, T.
author: Gu, W.
author: Munk, A.C.C.
author: Teshima, H.
author: Xu, Y.
author: Chain, P.
author: Chen, A.
author: Krypides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Mikhailova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Peters, L.
author: Pitluck, S.
author: Woyke, T.
author: Kerfeld, C.
journal: Unpublished

2
title: Direct Submission
author: Gugger, M.
author: Coursin, T.
author: Rippka, R.
author: Tandeau De Marsac, N.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Davenport, K.
author: Daligault, H.
author: Erkkila, T.
author: Gu, W.
author: Munk, A.C.C.
author: Teshima, H.
author: Xu, Y.
author: Chain, P.
author: Chen, A.
author: Krypides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Mikhailova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Peters, L.
author: Pitluck, S.
author: Woyke, T.
author: Kerfeld, C.
journal: Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4488:1
position: 4488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4488:1:source
so part of: sequence
organism: Crinalium epipsammum PCC 9333
mol type: genomic DNA
strain: PCC 9333
isolation source: not provided; submitted under MIGS 2.1
plasmid: pCRI9333.08

1173022
type: Taxonomy
SIO_000068: taxonomy

CRI9333_RS24495
type: Gene
subclass of: SO_0000704
RO_0002162: 1173022
locus tag: CRI9333_RS24495
old locus tag: Cri9333_5000
so part of: sequence
location: 120..878
location: region:120-878:1
so has part: feature:120-878:1:exon
subclass of: SO_0000010

position:120:1
position: 120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:878:1
position: 878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120-878:1:exon

CRI9333_RS24495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1173022
locus tag: CRI9333_RS24495
old locus tag: Cri9333_5000
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTLVLSAEVTDVNIGFLVIDGLMDENGNFYIAVPQMADIDLVPPNRSSKQLEAFINTGFQSHVKLDFVKLKTEFNPKPINAISLKTFEVLLARLDRKGNVKAQEFRDVLAGLSLHQLFCDAFGIRFEKEERQSWLKARMLTKETFWFMGDSIKQYYLEHPRQEKYPSQNYCEAFDTLNFALFGKRSKTIKEILGIGKSALNRDHFGQNSLKKIEMIQRIAEAQIKYESKKPVEAVKFAAAVMNYQVSDFRE
SIO_010081: CRI9333_RS24495
subclass of: SO_0000673
so part of: CRI9333_RS24495
location: 120..878
location: region:120-878:1
so has part: feature:120-878:1:exon

WP_015205643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120-878:1:exon

CRI9333_RS24500
type: Gene
subclass of: SO_0000704
RO_0002162: 1173022
locus tag: CRI9333_RS24500
old locus tag: Cri9333_5001
so part of: sequence
location: complement(911..1606)
location: region:911-1606:-1
so has part: feature:911-1606:-1:exon
subclass of: SO_0000010

position:911:-1
position: 911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1606:-1
position: 1606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:911-1606:-1:exon

CRI9333_RS24500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1173022
locus tag: CRI9333_RS24500
old locus tag: Cri9333_5001
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSPFFSGRIPEDLNERIQQHCAETGESKTQVLLNALSKYLDFPIKPPATTGISTERFSQLERRVTELEKKLEITNVSSADNSMAEVDRVSDNNNNLVEQPDNNLIKENETSGNNADAVKEPDNSDNADNQIVRSINGDRTQLSISGIEQQPVEVNQSDRKPWIVKTNDAPNLPGLEKMDKNKVSQKLRNTKAAEKTEVRIGQYLLRYCGKEEGIKVRGSLLWEVIPDDNT
SIO_010081: CRI9333_RS24500
subclass of: SO_0000673
so part of: CRI9333_RS24500
location: complement(911..1606)
location: region:911-1606:-1
so has part: feature:911-1606:-1:exon

WP_015205644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:911-1606:-1:exon

CRI9333_RS24510
type: Gene
subclass of: SO_0000704
RO_0002162: 1173022
locus tag: CRI9333_RS24510
old locus tag: Cri9333_5003
so part of: sequence
location: 2246..2815
location: region:2246-2815:1
so has part: feature:2246-2815:1:exon
subclass of: SO_0000010

position:2246:1
position: 2246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2815:1
position: 2815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2246-2815:1:exon

CRI9333_RS24510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1173022
locus tag: CRI9333_RS24510
old locus tag: Cri9333_5003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEEPIKAERATVEFFDGLTVDGYRMPDGEFRIGLAGASRILGYSDRWLRDAVTGETPRTAKALEGIGFSENIEKVLGQSNQGNQFEDTTINLDDFNCCIIYGVQAKRKAAIALQKSFTKLALNDFFRDAFGEPPLSIEQKRDLFYKTYAASISPEDWRTMDKQEILRLALPGDEPHLRRGKWNSWSDDI
SIO_010081: CRI9333_RS24510
subclass of: SO_0000673
so part of: CRI9333_RS24510
location: 2246..2815
location: region:2246-2815:1
so has part: feature:2246-2815:1:exon

WP_015205646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2246-2815:1:exon

CRI9333_RS24515
type: Gene
subclass of: SO_0000704
RO_0002162: 1173022
locus tag: CRI9333_RS24515
old locus tag: Cri9333_5004
so part of: sequence
location: 3049..3264
location: region:3049-3264:1
so has part: feature:3049-3264:1:exon
subclass of: SO_0000010

position:3049:1
position: 3049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3264:1
position: 3264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3049-3264:1:exon

CRI9333_RS24515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1173022
locus tag: CRI9333_RS24515
old locus tag: Cri9333_5004
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKFSKVALVGLVTLAFSVLAGVSVGAEGFKNSLPLLFQAASATAVVSKNALDVIDNLERKEKGKEPKNGD
SIO_010081: CRI9333_RS24515
subclass of: SO_0000673
so part of: CRI9333_RS24515
location: 3049..3264
location: region:3049-3264:1
so has part: feature:3049-3264:1:exon

WP_015205647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3049-3264:1:exon

CRI9333_RS24520
type: Gene
subclass of: SO_0000704
RO_0002162: 1173022
locus tag: CRI9333_RS24520
old locus tag: Cri9333_5005
so part of: sequence
location: 3444..4379
location: region:3444-4379:1
so has part: feature:3444-4379:1:exon
subclass of: SO_0000010

position:3444:1
position: 3444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4379:1
position: 4379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3444-4379:1:exon

CRI9333_RS24520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1173022
locus tag: CRI9333_RS24520
old locus tag: Cri9333_5005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001313552.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MPEQTDTEQKNTDAPSLSDLSSRDKPWDKHRSNADKVSAYYVGSEFQGYSDRAYFCSELLDFRLTPDQDEGVYKLKLAAARFCRVRHCPVCQWRRSLMWKAKAYKILPRIIKKYPTHRWLFLTLTLRNCKITELRETLKHMHESFKRMTKLKAFPAIGWIKSTEVTRGKDGSAHPHFHCLLMVAPGYFGKNYIRQDEWVEMWRQSLRIDYNPVLDVQAIKKGQSPASLVPELLKYCTKESDLVADREWFLELTRQMHKTRAIATGGVLKEYLKELEQEPSDLVGEDSQAEVDEGHLYFDWKRKEKKYRLVE
SIO_010081: CRI9333_RS24520
subclass of: SO_0000673
so part of: CRI9333_RS24520
location: 3444..4379
location: region:3444-4379:1
so has part: feature:3444-4379:1:exon

WP_015205648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3444-4379:1:exon