Helicobacter cinaedi PAGU611 plasmid pHci1, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.
Complete genome sequence of Helicobacter cinaedi strain PAGU611, isolated in a case of human bacteremia
Submitted (13-APR-2012) Contact:Hideki Hirakawa Kazusa DNA Research Institute, Department of Plant Genome Research; 2-6-7 Kazusakamatari, Kisarazu 292-0818, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP012345.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 5.3\nGenome Coverage :: 31x (454 GS FLX); 52x (Miseq)\nSequencing Technology :: 454 GS FLX; Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 01:17:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,207\nCDSs (total) :: 2,159\nGenes (coding) :: 2,117\nCDSs (with protein) :: 2,117\nGenes (RNA) :: 48\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 40\nncRNAs :: 2\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 18 of 42\nPseudo Genes (incomplete) :: 28 of 42\nPseudo Genes (internal stop) :: 9 of 42\nPseudo Genes (multiple problems) :: 9 of 42\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002957548.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014667639.1
COORDINATES: similar to AA sequence:RefSeq:WP_014667640.1
COORDINATES: similar to AA sequence:RefSeq:WP_015453692.1
type VI secretion system amidase effector protein Tae4
COORDINATES: similar to AA sequence:RefSeq:WP_015453693.1
COORDINATES: similar to AA sequence:RefSeq:WP_015453694.1
COORDINATES: protein motif:HMM:NF025478.2
T6SS effector amidase Tae4 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002957538.1
COORDINATES: similar to AA sequence:RefSeq:WP_005219845.1
COORDINATES: similar to AA sequence:RefSeq:WP_004085365.1
COORDINATES: protein motif:HMM:NF022635.2
COORDINATES: similar to AA sequence:RefSeq:WP_002957543.1
COORDINATES: similar to AA sequence:RefSeq:WP_002957544.1
COORDINATES: similar to AA sequence:RefSeq:WP_002957546.1
COORDINATES: similar to AA sequence:RefSeq:WP_005219857.1
COORDINATES: similar to AA sequence:RefSeq:WP_005219874.1
COORDINATES: similar to AA sequence:RefSeq:WP_005219877.1