Desulfocapsa sulfexigens DSM 10523 plasmid unnamed, complete sequence.
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfocapsaceae; Desulfocapsa.
Complete genome sequence of Desulfocapsa sulfexigens, a marine Delta-Proteobacterium specialized in disproportionating inorganic sulfur compounds
Submitted (11-DEC-2012) Department of Bioscience / Center for Geomicrobiology, Aarhus University, Ny Munkegade 116, Aarhus 8000, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP003986.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/17/2022 01:19:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,600\nCDSs (total) :: 3,541\nGenes (coding) :: 3,512\nCDSs (with protein) :: 3,512\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 4 of 29\nPseudo Genes (incomplete) :: 26 of 29\nPseudo Genes (internal stop) :: 1 of 29\nPseudo Genes (multiple problems) :: 1 of 29\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004075694.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF020266.2
COORDINATES: similar to AA sequence:RefSeq:WP_015405023.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024106.2
COORDINATES: protein motif:HMM:NF012345.2
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF014841.2
GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003573.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004363 - glutathione synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF040521.1
C45 family autoproteolytic acyltransferase/hydolase
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF016220.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013930.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_003531811.1
COORDINATES: similar to AA sequence:RefSeq:WP_015216901.1
COORDINATES: similar to AA sequence:RefSeq:WP_002169260.1
COORDINATES: similar to AA sequence:RefSeq:WP_011396361.1
COORDINATES: similar to AA sequence:RefSeq:WP_013221925.1
COORDINATES: similar to AA sequence:RefSeq:WP_020678112.1
COORDINATES: similar to AA sequence:RefSeq:WP_000904908.1
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein