Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiodictyon.
Complete genome sequence of Candidatus 'Thiodictyon syntrophicum' sp. nov. strain Cad16T, a photolithoautotroph purple sulfur bacterium isolated from an alpine meromictic lake
Submitted (17-MAR-2017) Microbiology, University of Geneva, 30, quai Ernest-Ansermet, Geneva, GE CH - 1211, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP020372.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly.2 v. Feb 2015\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 08:34:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,697\nCDSs (total) :: 6,637\nGenes (coding) :: 6,480\nCDSs (with protein) :: 6,480\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 157\nCDSs (without protein) :: 157\nPseudo Genes (ambiguous residues) :: 0 of 157\nPseudo Genes (frameshifted) :: 28 of 157\nPseudo Genes (incomplete) :: 134 of 157\nPseudo Genes (internal stop) :: 19 of 157\nPseudo Genes (multiple problems) :: 22 of 157\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference material of Candidatus Thiodictyon syntrophicum
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_020507013.1
COORDINATES: similar to AA sequence:RefSeq:WP_002925302.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007192973.1
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012580.2
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014776991.1
GTPase/DUF3482 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005220466.1
COORDINATES: similar to AA sequence:RefSeq:WP_005221466.1
light-harvesting antenna LH1, alpha subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020507019.1
COORDINATES: similar to AA sequence:RefSeq:WP_020507025.1
GO:0030096 - plasma membrane-derived thylakoid photosystem II [Evidence IEA]
GO:0015979 - photosynthesis [Evidence IEA]
light-harvesting antenna LH1, beta subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007191960.1
GO:0016020 - membrane [Evidence IEA]; GO:0030077 - plasma membrane light-harvesting complex [Evidence IEA]
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020507023.1
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007191964.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020507024.1
COORDINATES: similar to AA sequence:RefSeq:WP_005221464.1
COORDINATES: similar to AA sequence:RefSeq:WP_005221456.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020507027.1
GO:0045436 - lycopene beta cyclase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005221459.1
COORDINATES: similar to AA sequence:RefSeq:WP_014778428.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019012951.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504009.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504008.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504007.1
COORDINATES: similar to AA sequence:RefSeq:WP_019916975.1
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]
chlorophyll synthesis pathway protein BchC
COORDINATES: similar to AA sequence:RefSeq:WP_020504004.1
chlorophyllide a reductase iron protein subunit X
COORDINATES: similar to AA sequence:RefSeq:WP_012591063.1
COORDINATES: similar to AA sequence:RefSeq:WP_011504139.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012971727.1
COORDINATES: similar to AA sequence:RefSeq:WP_020091993.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020503998.1
photosynthetic reaction center subunit L
COORDINATES: similar to AA sequence:RefSeq:WP_020503997.1
photosynthetic reaction center subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_007039475.1
photosynthetic reaction center cytochrome PufC
COORDINATES: similar to AA sequence:RefSeq:WP_020503994.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503993.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012500249.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: similar to AA sequence:RefSeq:WP_014778407.1
GO:0000287 - magnesium ion binding [Evidence IEA]
RuBisCO large subunit C-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007191465.1
phytoene/squalene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020086097.1
COORDINATES: similar to AA sequence:RefSeq:WP_020173683.1
COORDINATES: similar to AA sequence:RefSeq:WP_014778434.1
COORDINATES: similar to AA sequence:RefSeq:WP_009151314.1
COORDINATES: similar to AA sequence:RefSeq:WP_020506999.1
COORDINATES: similar to AA sequence:RefSeq:WP_020506998.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000508.1
COORDINATES: similar to AA sequence:RefSeq:WP_020506993.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020503491.1
There are 14 genes on the gvp gene cluster in halophilic archaea. The product of gvpA is a structural component of gas vesicles, which provide buoyancy to cells and promote flotation. It has been reported that the products of gvpAO and gvpFGJKLM represent the minimal set required for gas vesicle formation in halophilic archaea; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020506155.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015175.2
COORDINATES: similar to AA sequence:RefSeq:WP_010132007.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504286.1
COORDINATES: similar to AA sequence:RefSeq:WP_004109328.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504299.1
COORDINATES: protein motif:HMM:NF018620.2
COORDINATES: similar to AA sequence:RefSeq:WP_007195265.1
plasma-membrane proton-efflux P-type ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_014779697.1
COORDINATES: similar to AA sequence:RefSeq:WP_020506283.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020383996.1
COORDINATES: similar to AA sequence:RefSeq:WP_016515172.1
COORDINATES: protein motif:HMM:NF019984.2
group II intron maturase-specific domain-containing protein
PEP-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010474048.1
COORDINATES: protein motif:HMM:NF033542.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017326247.1
COORDINATES: protein motif:HMM:NF025840.2
DarT ssDNA thymidine ADP-ribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009149936.1
COORDINATES: similar to AA sequence:RefSeq:WP_007195510.1
COORDINATES: similar to AA sequence:RefSeq:WP_013164609.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015083338.1
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: similar to AA sequence:RefSeq:WP_007195431.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503939.1
GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020503938.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_020503937.1
magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_020503936.1
GO:0003674 - molecular_function [Evidence IEA]
putative photosynthetic complex assembly protein PuhE
COORDINATES: protein motif:HMM:TIGR03054.2
photosynthetic complex assembly protein PuhC
COORDINATES: similar to AA sequence:RefSeq:WP_014778794.1
photosynthetic complex putative assembly protein PuhB
COORDINATES: similar to AA sequence:RefSeq:WP_012971814.1
photosynthetic reaction center subunit H
COORDINATES: similar to AA sequence:RefSeq:WP_020503932.1
COORDINATES: similar to AA sequence:RefSeq:WP_007040309.1
GO:0046406 - magnesium protoporphyrin IX methyltransferase activity [Evidence IEA]
magnesium protoporphyrin IX methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018411937.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020503929.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503928.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_005221225.1
GO:0016730 - oxidoreductase activity, acting on iron-sulfur proteins as donors [Evidence IEA]
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N
COORDINATES: similar to AA sequence:RefSeq:WP_020503926.1
2-vinyl bacteriochlorophyllide hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_015281612.1
GO:0010109 - regulation of photosynthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020506083.1
COORDINATES: similar to AA sequence:RefSeq:WP_010401187.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536883.1
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007734015.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006793 - phosphorus metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020508139.1
COORDINATES: similar to AA sequence:RefSeq:WP_017277297.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779913.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504821.1
COORDINATES: similar to AA sequence:RefSeq:WP_014002077.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504819.1
COORDINATES: similar to AA sequence:RefSeq:WP_010096767.1
COORDINATES: similar to AA sequence:RefSeq:WP_015313853.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006911892.1
COORDINATES: similar to AA sequence:RefSeq:WP_005224765.1
COORDINATES: similar to AA sequence:RefSeq:WP_020507757.1
COORDINATES: similar to AA sequence:RefSeq:WP_020507758.1
COORDINATES: similar to AA sequence:RefSeq:WP_007191944.1
COORDINATES: similar to AA sequence:RefSeq:WP_009857134.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503922.1
GO:0045550 - geranylgeranyl reductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020508444.1
formylmethanofuran dehydrogenase subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_007039276.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
formylmethanofuran dehydrogenase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_013442349.1
formylmethanofuran--tetrahydromethanopterin N-formyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011830210.1
GO:0018493 - formylmethanofuran dehydrogenase activity [Evidence IEA]
formylmethanofuran dehydrogenase subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_017484802.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504725.1
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: similar to AA sequence:RefSeq:WP_020502752.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018985768.1
COORDINATES: similar to AA sequence:RefSeq:WP_011296444.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436219.1
acyl CoA:acetate/3-ketoacid CoA transferase
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020506741.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019303585.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011237709.1
COORDINATES: protein motif:HMM:NF012862.2
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF013559.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017742804.1
COORDINATES: similar to AA sequence:RefSeq:WP_002788899.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006316203.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020506736.1
COORDINATES: protein motif:HMM:NF017835.2
AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase
COORDINATES: protein motif:HMM:NF033480.1
bifunctional lysylphosphatidylglycerol flippase/synthetase MprF
COORDINATES: similar to AA sequence:RefSeq:WP_014778190.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0070568 - guanylyltransferase activity [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdenum cofactor guanylyltransferase MobA
COORDINATES: similar to AA sequence:RefSeq:WP_011479868.1
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_007020020.1
COORDINATES: similar to AA sequence:RefSeq:WP_020506834.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: protein motif:HMM:NF016629.2
COORDINATES: similar to AA sequence:RefSeq:WP_020503423.1
COORDINATES: protein motif:HMM:NF012570.2
MIT C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012508440.1
COORDINATES: similar to AA sequence:RefSeq:WP_015112751.1
COORDINATES: similar to AA sequence:RefSeq:WP_010962065.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: similar to AA sequence:RefSeq:WP_018174255.1
GO:0016787 - hydrolase activity [Evidence IEA]
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF014686.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013165583.1
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010962061.1
GO:0016840 - carbon-nitrogen lyase activity [Evidence IEA]
GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020507700.1
triphosphoribosyl-dephospho-CoA synthase
COORDINATES: similar to AA sequence:RefSeq:WP_013818911.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019918608.1
GO:0018759 - methenyltetrahydromethanopterin cyclohydrolase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
methenyltetrahydromethanopterin cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_020485390.1
methylenetetrahydromethanopterin dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014188371.1
COORDINATES: similar to AA sequence:RefSeq:WP_009024268.1
COORDINATES: similar to AA sequence:RefSeq:WP_007194034.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_002926105.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009148210.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:TIGR03831.1
COORDINATES: protein motif:HMM:NF021391.2
COORDINATES: similar to AA sequence:RefSeq:WP_015950080.1
COORDINATES: similar to AA sequence:RefSeq:WP_009453835.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004303513.1
COORDINATES: protein motif:HMM:NF025024.2
COORDINATES: similar to AA sequence:RefSeq:WP_020507409.1
COORDINATES: protein motif:HMM:NF023276.2
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_012281937.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_012537511.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: protein motif:HMM:NF018745.2
COORDINATES: similar to AA sequence:RefSeq:WP_020506329.1
COORDINATES: similar to AA sequence:RefSeq:WP_020506328.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0032778 - P-type cobalt transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011801539.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011801542.1
COORDINATES: similar to AA sequence:RefSeq:WP_004359928.1
cobalamin biosynthesis central domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018987718.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020503810.1
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE
COORDINATES: similar to AA sequence:RefSeq:WP_015767087.1
GO:0008168 - methyltransferase activity [Evidence IEA]
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011831803.1
COORDINATES: similar to AA sequence:RefSeq:WP_015767089.1
COORDINATES: similar to AA sequence:RefSeq:WP_011767251.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011331844.1
COORDINATES: protein motif:HMM:NF018004.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017841684.1
COORDINATES: similar to AA sequence:RefSeq:WP_017817642.1
COORDINATES: protein motif:HMM:NF019023.2
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017841820.1
COORDINATES: protein motif:HMM:NF025229.2
FlgD immunoglobulin-like domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020470172.1
COORDINATES: similar to AA sequence:RefSeq:WP_015280675.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF021357.2
COORDINATES: similar to AA sequence:RefSeq:WP_020505226.1
COORDINATES: similar to AA sequence:RefSeq:WP_020505225.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018947828.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020505224.1
GO:0048472 - threonine-phosphate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014777006.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005308547.1
COORDINATES: similar to AA sequence:RefSeq:WP_011736156.1
COORDINATES: similar to AA sequence:RefSeq:WP_019920524.1
Sir2 family NAD-dependent protein deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_020508346.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009148573.1
COORDINATES: similar to AA sequence:RefSeq:WP_020508460.1
COORDINATES: similar to AA sequence:RefSeq:WP_020508459.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009151368.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020506536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007193900.1
COORDINATES: similar to AA sequence:RefSeq:WP_020507999.1
COORDINATES: similar to AA sequence:RefSeq:WP_016491758.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_015626787.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007812069.1
COORDINATES: similar to AA sequence:RefSeq:WP_020505213.1
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: similar to AA sequence:RefSeq:WP_020503947.1
COORDINATES: similar to AA sequence:RefSeq:WP_007191449.1
COORDINATES: similar to AA sequence:RefSeq:WP_009148009.1
phosphate-starvation-inducible PsiE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007041928.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_007039790.1
COORDINATES: similar to AA sequence:RefSeq:WP_013029283.1
COORDINATES: protein motif:HMM:NF021508.2
COORDINATES: similar to AA sequence:RefSeq:WP_015757755.1
COORDINATES: similar to AA sequence:RefSeq:WP_009147165.1
COORDINATES: protein motif:HMM:NF033590.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503970.1
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain
COORDINATES: similar to AA sequence:RefSeq:WP_008932667.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503973.1
GO:0010007 - magnesium chelatase complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0016851 - magnesium chelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012970397.1
COORDINATES: similar to AA sequence:RefSeq:WP_007042777.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_012518683.1
COORDINATES: similar to AA sequence:RefSeq:WP_020160221.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011300856.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007804884.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014779154.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF015630.2
COORDINATES: similar to AA sequence:RefSeq:WP_019641382.1
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014751259.1
PQQ-dependent dehydrogenase, methanol/ethanol family
COORDINATES: similar to AA sequence:RefSeq:WP_015259590.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR03865.1
PQQ-dependent catabolism-associated CXXCW motif protein
COORDINATES: similar to AA sequence:RefSeq:WP_008291516.1
GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqB
COORDINATES: similar to AA sequence:RefSeq:WP_019866019.1
COORDINATES: similar to AA sequence:RefSeq:WP_017938759.1
GO:0048038 - quinone binding [Evidence IEA]
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
COORDINATES: similar to AA sequence:RefSeq:WP_007039245.1
GO:0018149 - peptide cross-linking [Evidence IEA]; GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqE
COORDINATES: similar to AA sequence:RefSeq:WP_017841966.1
COORDINATES: similar to AA sequence:RefSeq:WP_003245365.1
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: similar to AA sequence:RefSeq:WP_020505136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012974396.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012974397.1
COORDINATES: protein motif:HMM:TIGR03361.1
type VI secretion system tip protein VgrG
COORDINATES: protein motif:HMM:NF013625.2
peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF020366.2
COORDINATES: similar to AA sequence:RefSeq:WP_011979123.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779700.1
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_014779702.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779704.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504620.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779560.1
COORDINATES: similar to AA sequence:RefSeq:WP_020507008.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503463.1
COORDINATES: similar to AA sequence:RefSeq:WP_009148244.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012979577.1
COORDINATES: similar to AA sequence:RefSeq:WP_011745144.1
COORDINATES: similar to AA sequence:RefSeq:WP_020508125.1
COORDINATES: similar to AA sequence:RefSeq:WP_020508122.1
COORDINATES: similar to AA sequence:RefSeq:WP_009148233.1
COORDINATES: protein motif:HMM:TIGR03363.1
COORDINATES: similar to AA sequence:RefSeq:WP_020157165.1
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020506193.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013789377.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_014778680.1
type VI secretion system accessory protein TagJ
COORDINATES: similar to AA sequence:RefSeq:WP_019467499.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_010175153.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_007041000.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_020506187.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_012509228.1
COORDINATES: protein motif:HMM:TIGR03986.1
TIGR03986 family CRISPR-associated RAMP protein
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002944152.1
COORDINATES: protein motif:HMM:NF025433.2
LssY C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013670.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022112.2
COORDINATES: similar to AA sequence:RefSeq:WP_011417410.1
COORDINATES: protein motif:HMM:NF015722.2
COORDINATES: similar to AA sequence:RefSeq:WP_011142654.1
COORDINATES: protein motif:HMM:NF019324.2
COORDINATES: similar to AA sequence:RefSeq:WP_020506763.1
COORDINATES: similar to AA sequence:RefSeq:WP_018272884.1
COORDINATES: similar to AA sequence:RefSeq:WP_004251341.1
COORDINATES: similar to AA sequence:RefSeq:WP_015931770.1
PQQ-dependent catabolism-associated beta-propeller protein
COORDINATES: similar to AA sequence:RefSeq:WP_007039323.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011995709.1
COORDINATES: protein motif:HMM:NF020350.2
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_007065652.1
COORDINATES: similar to AA sequence:RefSeq:WP_007039304.1
COORDINATES: similar to AA sequence:RefSeq:WP_012777392.1
COORDINATES: similar to AA sequence:RefSeq:WP_017301539.1
COORDINATES: similar to AA sequence:RefSeq:WP_007042413.1
COORDINATES: similar to AA sequence:RefSeq:WP_002730641.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_009148702.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_002931443.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007179160.1
COORDINATES: similar to AA sequence:RefSeq:WP_007042415.1
COORDINATES: protein motif:HMM:NF038283.1
viperin family antiviral radical SAM protein
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:NF024640.2
COORDINATES: similar to AA sequence:RefSeq:WP_012264517.1
COORDINATES: similar to AA sequence:RefSeq:WP_020508142.1
COORDINATES: similar to AA sequence:RefSeq:WP_007194327.1
COORDINATES: protein motif:HMM:NF023113.2
COORDINATES: similar to AA sequence:RefSeq:WP_007039301.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006791223.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF033551.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779545.1
COORDINATES: similar to AA sequence:RefSeq:WP_015451938.1
COORDINATES: similar to AA sequence:RefSeq:WP_004339937.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: similar to AA sequence:RefSeq:WP_014005990.1
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012416509.1
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: similar to AA sequence:RefSeq:WP_014004871.1
COORDINATES: similar to AA sequence:RefSeq:WP_007039300.1
COORDINATES: similar to AA sequence:RefSeq:WP_018078576.1
COORDINATES: similar to AA sequence:RefSeq:WP_018410195.1
COORDINATES: similar to AA sequence:RefSeq:WP_018078578.1
(5-formylfuran-3-yl)methyl phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_019496538.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496539.1
COORDINATES: protein motif:HMM:NF014599.2
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051262 - protein tetramerization [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03830.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014778458.1
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: similar to AA sequence:RefSeq:WP_012535799.1
COORDINATES: similar to AA sequence:RefSeq:WP_011318159.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF013793.2