Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Spirosomaceae; Fibrella.
Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium
Submitted (22-MAR-2012) Bielefeld University, Cebitec, Universitaetsstr. 25, D-33615, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nHE796684.1.\nAccession number for main chromosome in this genome project:\nHE796683.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 11:23:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,804\nCDSs (total) :: 5,722\nGenes (coding) :: 5,712\nCDSs (with protein) :: 5,712\nGenes (RNA) :: 82\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 2\nPseudo Genes (total) :: 10\nCDSs (without protein) :: 10\nPseudo Genes (ambiguous residues) :: 0 of 10\nPseudo Genes (frameshifted) :: 1 of 10\nPseudo Genes (incomplete) :: 9 of 10\nPseudo Genes (internal stop) :: 0 of 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018622818.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014681870.1
DNA-binding ferritin-like protein (oxidative damage protectant)
COORDINATES: similar to AA sequence:RefSeq:WP_020594798.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_020603031.1
COORDINATES: similar to AA sequence:RefSeq:WP_020603875.1
COORDINATES: similar to AA sequence:RefSeq:WP_019986745.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF022838.2
COORDINATES: protein motif:HMM:NF039501.1
COORDINATES: protein motif:HMM:NF016041.2
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020606042.1
COORDINATES: similar to AA sequence:RefSeq:WP_012930820.1
COORDINATES: similar to AA sequence:RefSeq:WP_020603463.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019988426.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF025420.2
COORDINATES: similar to AA sequence:RefSeq:WP_012931173.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931170.1
COORDINATES: similar to AA sequence:RefSeq:WP_018342601.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018618809.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024918.2
COORDINATES: similar to AA sequence:RefSeq:WP_019991109.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991108.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991107.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991105.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991009.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991008.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991006.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991005.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991004.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991003.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991002.1
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019991000.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_019990999.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990997.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990995.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990994.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019990993.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931125.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990990.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990989.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990988.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990987.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990986.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990985.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990984.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990983.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990982.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_013931210.1
COORDINATES: similar to AA sequence:RefSeq:WP_015056738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990979.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990978.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990976.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990975.1
COORDINATES: similar to AA sequence:RefSeq:WP_016268111.1
COORDINATES: protein motif:HMM:NF033859.1
COORDINATES: similar to AA sequence:RefSeq:WP_006842084.1
COORDINATES: similar to AA sequence:RefSeq:WP_015564497.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003454802.1
COORDINATES: protein motif:HMM:NF033611.0
COORDINATES: similar to AA sequence:RefSeq:WP_015264317.1
COORDINATES: protein motif:HMM:NF025084.2
COORDINATES: similar to AA sequence:RefSeq:WP_019991372.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990954.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990953.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990951.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019990950.1
COORDINATES: protein motif:HMM:NF016615.2
COORDINATES: similar to AA sequence:RefSeq:WP_012928304.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931288.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019990917.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931290.1
COORDINATES: similar to AA sequence:RefSeq:WP_018622751.1
COORDINATES: similar to AA sequence:RefSeq:WP_018622752.1
COORDINATES: similar to AA sequence:RefSeq:WP_020604953.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931294.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990920.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012931248.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990922.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931250.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008463756.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019990927.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990928.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018619815.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018619816.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019990934.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018622770.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990938.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016464.2
COORDINATES: similar to AA sequence:RefSeq:WP_018618551.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990940.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931086.1
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012931329.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990943.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931097.1
COORDINATES: similar to AA sequence:RefSeq:WP_018622850.1
COORDINATES: similar to AA sequence:RefSeq:WP_018622849.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931208.1
Predicted divalent heavy-metal cations transporter
COORDINATES: similar to AA sequence:RefSeq:WP_018622845.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931211.1
COORDINATES: similar to AA sequence:RefSeq:WP_012788662.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018622843.1
COORDINATES: similar to AA sequence:RefSeq:WP_018622842.1
GO:0008968 - D-sedoheptulose 7-phosphate isomerase activity [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012931216.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_018622839.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991114.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931184.1
COORDINATES: similar to AA sequence:RefSeq:WP_018622830.1
nickel transport complex, NikM subunit,transmembrane
COORDINATES: similar to AA sequence:RefSeq:WP_018622829.1
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
COORDINATES: similar to AA sequence:RefSeq:WP_020603936.1
COORDINATES: similar to AA sequence:RefSeq:WP_020603935.1
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: similar to AA sequence:RefSeq:WP_020603932.1
COORDINATES: similar to AA sequence:RefSeq:WP_020603931.1
COORDINATES: similar to AA sequence:RefSeq:WP_020603925.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020603172.1
COORDINATES: similar to AA sequence:RefSeq:WP_020594800.1
COORDINATES: similar to AA sequence:RefSeq:WP_010569292.1
COORDINATES: similar to AA sequence:RefSeq:WP_018344005.1
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF012722.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019941267.1
COORDINATES: similar to AA sequence:RefSeq:WP_015331991.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
Permeases of the major facilitator superfamily
COORDINATES: similar to AA sequence:RefSeq:WP_008610752.1
COORDINATES: similar to AA sequence:RefSeq:WP_018622376.1