Helicobacter cetorum MIT 99-5656 plasmid pHCD, complete sequence.
type: Entry
definition: Helicobacter cetorum MIT 99-5656 plasmid pHCD, complete sequence.
sequence version: NC_017736.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NC_017736.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603198
keyword: RefSeq
source: Helicobacter cetorum MIT 99-5656
organism: Helicobacter cetorum MIT 99-5656
taxonomy: Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.
reference: 1
references: 24358262
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP003482.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:32:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,780\nCDSs (total) :: 1,734\nGenes (coding) :: 1,653\nCDSs (with protein) :: 1,653\nGenes (RNA) :: 46\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 3\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 41 of 81\nPseudo Genes (incomplete) :: 45 of 81\nPseudo Genes (internal stop) :: 14 of 81\nPseudo Genes (multiple problems) :: 17 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14124
topology: circular
so has quality: SO_0000988
location: 1..14124
location: region:1-14124:1
RO_0002162: 1163745

NC_017736
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603198
type: BioSample
SIO_000068: biosample

1
title: Sequence divergence and conservation in genomes of Helicobacter cetorum strains from a dolphin and a whale
author: Kersulyte, D.
author: Rossi, M.
author: Berg, D.E.
journal: PLoS One 8 (12), e83177 (2013)
pubmed: 24358262
comments: Publication Status: Online-Only

24358262
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Kersulyte, D.
author: Berg, D.E.
journal: Submitted (05-APR-2012) Molecular Microbiology, Washington University Medical School, 4940 Parkview Place, Saint Louis, MO 63110, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14124:1
position: 14124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14124:1:source
so part of: sequence
organism: Helicobacter cetorum MIT 99-5656
mol type: genomic DNA
strain: MIT 99-5656
isolation source: stomach of wild stranded animal
host: Lagenorhynchus acutus
type material: type strain of Helicobacter cetorum
plasmid: pHCD

1163745
type: Taxonomy
SIO_000068: taxonomy

HCD_RS09405
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS09405
so part of: sequence
location: join(14033..14124,1..55)
location: region:1-14124:1
so has part: feature:14033-14124:1:exon
so has part: feature:1-55:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:14033-14124:1:exon

position:14033:1
position: 14033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-55:1:exon

position:55:1
position: 55
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HCD_RS09405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS09405
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MINTKLKFQTIMDYLAKQGKNRADYELKPSTGETPLAKARSFLTKAPY
SIO_010081: HCD_RS09405
subclass of: SO_0000673
so part of: HCD_RS09405
location: join(14033..14124,1..55)
location: region:1-14124:1
so has part: feature:14033-14124:1:exon
so has part: feature:1-55:1:exon

WP_158308572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14033-14124:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-55:1:exon

HCD_RS08615
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08615
old locus tag: HCD_08729
so part of: sequence
location: complement(59..1381)
location: region:59-1381:-1
so has part: feature:59-1381:-1:exon
subclass of: SO_0000010

position:59:-1
position: 59
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1381:-1
position: 1381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59-1381:-1:exon

HCD_RS08615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08615
old locus tag: HCD_08729
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000867435.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA-guided endonuclease TnpB family protein
translation: MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFNERFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKELGLKVDENINLKRLIPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNILSKGLSLLGLGNSLADFKEQSLSY
SIO_010081: HCD_RS08615
subclass of: SO_0000673
so part of: HCD_RS08615
location: complement(59..1381)
location: region:59-1381:-1
so has part: feature:59-1381:-1:exon

WP_014658798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59-1381:-1:exon

HCD_RS08620
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
gene: tnpA
locus tag: HCD_RS08620
old locus tag: HCD_08734
so part of: sequence
location: 1418..1834
location: region:1418-1834:1
so has part: feature:1418-1834:1:exon
subclass of: SO_0000010

position:1418:1
position: 1418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1834:1
position: 1834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1418-1834:1:exon

HCD_RS08620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
gene: tnpA
locus tag: HCD_RS08620
old locus tag: HCD_08734
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001278583.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
translation: MKQIDNIRHGRHCVFLMHVHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSRLVNSLKGVSSRLVRQQNFKNVKATLWGNHLWSPSYFAGSCGGAPLEIIKQYIQEQETPH
SIO_010081: HCD_RS08620
subclass of: SO_0000673
so part of: HCD_RS08620
location: 1418..1834
location: region:1418-1834:1
so has part: feature:1418-1834:1:exon

WP_014658764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1418-1834:1:exon

HCD_RS09455
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS09455
old locus tag: HCD_08739
so part of: sequence
location: complement(1986..2126)
location: region:1986-2126:-1
so has part: feature:1986-2126:-1:exon
subclass of: SO_0000010

position:1986:-1
position: 1986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2126:-1
position: 2126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1986-2126:-1:exon

HCD_RS09455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS09455
old locus tag: HCD_08739
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015643655.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRDVEMGVKFYKELGKLEKQLAKYQSKVLEIKTQMRRLGSHSELF
SIO_010081: HCD_RS09455
subclass of: SO_0000673
so part of: HCD_RS09455
location: complement(1986..2126)
location: region:1986-2126:-1
so has part: feature:1986-2126:-1:exon

WP_014660169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1986-2126:-1:exon

HCD_RS08625
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
gene: mobC
locus tag: HCD_RS08625
old locus tag: HCD_08744
so part of: sequence
location: 2292..2633
location: region:2292-2633:1
so has part: feature:2292-2633:1:exon
subclass of: SO_0000010

position:2292:1
position: 2292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2633:1
position: 2633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2292-2633:1:exon

HCD_RS08625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
gene: mobC
locus tag: HCD_RS08625
old locus tag: HCD_08744
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014661892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MSIQTNKQVIKSLRLSKEQWQTIQTQMQEKNLNFSQLVLNSLLAQNSQAPIKSKKQKAIVNKELVIELAKWGNNLNQIAKHLNTNKGAWDRLALEQLIEISNQLEQLRAKYVS
SIO_010081: HCD_RS08625
subclass of: SO_0000673
so part of: HCD_RS08625
location: 2292..2633
location: region:2292-2633:1
so has part: feature:2292-2633:1:exon

WP_014660170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2292-2633:1:exon

HCD_RS08630
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08630
old locus tag: HCD_08749
so part of: sequence
location: 2623..4644
location: region:2623-4644:1
so has part: feature:2623-4644:1:exon
subclass of: SO_0000010

position:2623:1
position: 2623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4644:1
position: 4644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2623-4644:1:exon

HCD_RS08630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08630
old locus tag: HCD_08749
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014661891.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MLVKFWGTNQGGGDGDGSINYLLNERVEQGTAKVLRGDPNLTKSLLLSLTQKHKACVGCLSFEEPNIDESLKYELMESFENALLTESMQNRYNILWVEHTDKGRLELNFVIPRIDLITQKAFTPYYHSADIKRIDLWKDCINLKHNFTNPKDLEKQHNIQQHQTKNPQNKELLATYEKLDKLIQDNLGKLFNSRDDIINFLKDSQCEVTRQGKDYISVKLPNEPKAKRLKGFYYHETFRSISDIRDQLSEVRQRESQRERPNNQRDSDNHAELLRELENKLHRHIEYKQRYYEKLHQSTSKDPREPKEQLPRVRDSQQRTQQNHANETTRARETGPQEPSQEILTNAPNFHYGVSHHGDNISGGILSNHSTQQGQGIRAFTERSLSVKTRNRPTKQRQSTENLQPRADQEIREKHAERMLNNATECFNQRSRELTERERELTTSKEQRDSEFRERQKRAINQARESYSRISKAKQRLREPRDRNLELKRELRNATSNTQRTTKEISILRNDRESRIRASDTNLRTERNHAQKRFTEHVRADFTARITERSHQRARDFTSSIQDTTDRIREFRNNSQTRARTILHGIYTRTRDTINAIKDIYRNAKERISDFFQPTNERLSKRMEQETRELSKQVGEQEQRVREQDTRTSNLADKIAEHNQKIENSRSSGRGYR
SIO_010081: HCD_RS08630
subclass of: SO_0000673
so part of: HCD_RS08630
location: 2623..4644
location: region:2623-4644:1
so has part: feature:2623-4644:1:exon

WP_014660171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2623-4644:1:exon

HCD_RS09660
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS09660
pseudo: true
so part of: sequence
location: 5070..>5645
location: region:5070-5645:1
so has part: feature:5070-5645:1:exon
subclass of: SO_0000010

position:5070:1
position: 5070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5645:1
position: 5645
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5070-5645:1:exon

HCD_RS09660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS09660
inference: COORDINATES: protein motif:HMM:NF013235.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: HCD_RS09660
subclass of: SO_0000673
so part of: HCD_RS09660
location: 5070..>5645
location: region:5070-5645:1
so has part: feature:5070-5645:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5070-5645:1:exon

HCD_RS08640
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08640
old locus tag: HCD_08764
so part of: sequence
location: complement(6207..7529)
location: region:6207-7529:-1
so has part: feature:6207-7529:-1:exon
subclass of: SO_0000010

position:6207:-1
position: 6207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7529:-1
position: 7529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6207-7529:-1:exon

HCD_RS08640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08640
old locus tag: HCD_08764
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000867435.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA-guided endonuclease TnpB family protein
translation: MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFNERFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKELGLKVDENINLKRLIPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNILSKGLSLLGLGNSLADFKEQSLSY
SIO_010081: HCD_RS08640
subclass of: SO_0000673
so part of: HCD_RS08640
location: complement(6207..7529)
location: region:6207-7529:-1
so has part: feature:6207-7529:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6207-7529:-1:exon

HCD_RS08645
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
gene: tnpA
locus tag: HCD_RS08645
old locus tag: HCD_08769
so part of: sequence
location: 7566..7982
location: region:7566-7982:1
so has part: feature:7566-7982:1:exon
subclass of: SO_0000010

position:7566:1
position: 7566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7982:1
position: 7982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7566-7982:1:exon

HCD_RS08645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
gene: tnpA
locus tag: HCD_RS08645
old locus tag: HCD_08769
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001278583.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
translation: MKQIDNIRHGRHCVFLMHVHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSRLVNSLKGVSSRLVRQQNFKNVKATLWGNHLWSPSYFAGSCGGAPLEIIKQYIQEQETPH
SIO_010081: HCD_RS08645
subclass of: SO_0000673
so part of: HCD_RS08645
location: 7566..7982
location: region:7566-7982:1
so has part: feature:7566-7982:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7566-7982:1:exon

HCD_RS08650
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08650
old locus tag: HCD_08774
so part of: sequence
location: 8148..8336
location: region:8148-8336:1
so has part: feature:8148-8336:1:exon
subclass of: SO_0000010

position:8148:1
position: 8148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8336:1
position: 8336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8148-8336:1:exon

HCD_RS08650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08650
old locus tag: HCD_08774
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLELGTSLQDTKKICLELYKSQELLKAQQKEKQSKQPTQAPQKQSYYYQQPKENDKGDRSM
SIO_010081: HCD_RS08650
subclass of: SO_0000673
so part of: HCD_RS08650
location: 8148..8336
location: region:8148-8336:1
so has part: feature:8148-8336:1:exon

WP_014660173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8148-8336:1:exon

HCD_RS09725
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS09725
so part of: sequence
location: complement(8421..8543)
location: region:8421-8543:-1
so has part: feature:8421-8543:-1:exon
subclass of: SO_0000010

position:8421:-1
position: 8421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8543:-1
position: 8543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8421-8543:-1:exon

HCD_RS09725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS09725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRAVNKGARNAKKEFFNAKKEFFNAKTPPKKEFFNAKTPP
SIO_010081: HCD_RS09725
subclass of: SO_0000673
so part of: HCD_RS09725
location: complement(8421..8543)
location: region:8421-8543:-1
so has part: feature:8421-8543:-1:exon

WP_265101292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8421-8543:-1:exon

HCD_RS09730
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS09730
so part of: sequence
location: complement(8658..8780)
location: region:8658-8780:-1
so has part: feature:8658-8780:-1:exon
subclass of: SO_0000010

position:8658:-1
position: 8658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8780:-1
position: 8780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8658-8780:-1:exon

HCD_RS09730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS09730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRAVNKGARNAKKEFFNAKKEFFNAKTPPKKEFFNAKTPP
SIO_010081: HCD_RS09730
subclass of: SO_0000673
so part of: HCD_RS09730
location: complement(8658..8780)
location: region:8658-8780:-1
so has part: feature:8658-8780:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8658-8780:-1:exon

HCD_RS08655
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08655
old locus tag: HCD_08779
so part of: sequence
location: 9161..10369
location: region:9161-10369:1
so has part: feature:9161-10369:1:exon
subclass of: SO_0000010

position:9161:1
position: 9161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10369:1
position: 10369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9161-10369:1:exon

HCD_RS08655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08655
old locus tag: HCD_08779
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014661888.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSVNAPKPKKNYNYKKSRKIQKNLITQDNRLIYSQYNEMTTNEIKVFLWAVSKLNPTQDTHFIPCKIPISEIFGALEHKETENYTYIKKLCDNLAKRTFTDETLSIDPTTNEQVEEFATMPIFQVLKYKKKQAEITYQLNDYIKPYLLGLKKSFTQTPLDCILPMKSYYAIRIYQMLLSEIKQNKNTLKINVAYLQEILSVAKSLLVWQDFKRFVLEKAQKEINKYSDIVLVEIEPHKQGRKITDITFHFEYKSTDKRIVRDKTKQNSYINAILDAFKEFLGKTIAYEVKSNSMPISCVYEGDCEVVRFENCSDELKNALNTPEKYKNRQVAVMKLKDRESGKIYSLAVRDLNSIQKIRERQAQAESLFYQDTKKVKDSFDIQNAVKNGTLFEYMQQWKQEK
SIO_010081: HCD_RS08655
subclass of: SO_0000673
so part of: HCD_RS08655
location: 9161..10369
location: region:9161-10369:1
so has part: feature:9161-10369:1:exon

WP_014660174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9161-10369:1:exon

HCD_RS08660
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08660
old locus tag: HCD_08784
so part of: sequence
location: complement(10378..10872)
location: region:10378-10872:-1
so has part: feature:10378-10872:-1:exon
subclass of: SO_0000010

position:10378:-1
position: 10378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10872:-1
position: 10872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10378-10872:-1:exon

HCD_RS08660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08660
old locus tag: HCD_08784
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDIAHLRELVDKMDIVSLRVENNFNNLDTLLNDTNTANKTLNGVIANAENKILQIQKTHENELKNMRETFQQELEKTKQELRDNAKKMGSLNEITRSELKKINTKSFMQGVGITLVFVVIFGLGLLKYYQGAISYNTVSEIVFSLQKYCNVNNRCNFDLSFHR
SIO_010081: HCD_RS08660
subclass of: SO_0000673
so part of: HCD_RS08660
location: complement(10378..10872)
location: region:10378-10872:-1
so has part: feature:10378-10872:-1:exon

WP_014660175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10378-10872:-1:exon

HCD_RS08665
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08665
old locus tag: HCD_08789
so part of: sequence
location: complement(10877..11656)
location: region:10877-11656:-1
so has part: feature:10877-11656:-1:exon
subclass of: SO_0000010

position:10877:-1
position: 10877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11656:-1
position: 11656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10877-11656:-1:exon

HCD_RS08665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08665
old locus tag: HCD_08789
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIAVVLNSKGGVGKSTFANQILTSYFYEKSNGNFKVKLVEIDDENNDVKSLYKSNIIDEHVINTNKLRQLDDFLITDENLIIDVGGNKTTEIFLKEIQNYFHNNFVWFIPLGNGEQDNLNAYDTYKKILEVNSRAKIIFVLSRVKDLDDLTYEFMNFFGNKYFEISGIFDLIQDVSYITIKDFTILTHSRFFNKTAYDLGTSEKNSAYYTKKISENFNDREQAMKFQKFKRLAHSAENFVSYLRDDVFKQLDSKNDVGV
SIO_010081: HCD_RS08665
subclass of: SO_0000673
so part of: HCD_RS08665
location: complement(10877..11656)
location: region:10877-11656:-1
so has part: feature:10877-11656:-1:exon

WP_014660176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10877-11656:-1:exon

HCD_RS08670
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08670
old locus tag: HCD_08794
so part of: sequence
location: complement(11665..12060)
location: region:11665-12060:-1
so has part: feature:11665-12060:-1:exon
subclass of: SO_0000010

position:11665:-1
position: 11665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12060:-1
position: 12060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11665-12060:-1:exon

HCD_RS08670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08670
old locus tag: HCD_08794
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKNPNSIAKGWVNKALKDDEIQRIKQEIINDYEVIKKEYSKVKNETNDFLEKINELLKMCLKDGLTFAQMKRIIYDKFSFNVSAQVIKKYAVDYLGYIHKEKEKSTTHDSNNHDRHHELRSHKSHDNDRP
SIO_010081: HCD_RS08670
subclass of: SO_0000673
so part of: HCD_RS08670
location: complement(11665..12060)
location: region:11665-12060:-1
so has part: feature:11665-12060:-1:exon

WP_014660177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11665-12060:-1:exon

HCD_RS08675
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
gene: mobC
locus tag: HCD_RS08675
old locus tag: HCD_08799
so part of: sequence
location: 12232..12549
location: region:12232-12549:1
so has part: feature:12232-12549:1:exon
subclass of: SO_0000010

position:12232:1
position: 12232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12549:1
position: 12549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12232-12549:1:exon

HCD_RS08675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
gene: mobC
locus tag: HCD_RS08675
old locus tag: HCD_08799
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MKTTAISIRLNKEQKDLITFKAKAINISKTDLILRAIENAEIKSDSKDTTKLLSEVNRIGNNLNQIAHAINLTKLKNQLHNFDFSTLENDLTIIKYQLNELLKKA
SIO_010081: HCD_RS08675
subclass of: SO_0000673
so part of: HCD_RS08675
location: 12232..12549
location: region:12232-12549:1
so has part: feature:12232-12549:1:exon

WP_014660178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12232-12549:1:exon

HCD_RS08680
type: Gene
subclass of: SO_0000704
RO_0002162: 1163745
locus tag: HCD_RS08680
old locus tag: HCD_08804
so part of: sequence
location: 12552..14036
location: region:12552-14036:1
so has part: feature:12552-14036:1:exon
subclass of: SO_0000010

position:12552:1
position: 12552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14036:1
position: 14036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12552-14036:1:exon

HCD_RS08680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1163745
locus tag: HCD_RS08680
old locus tag: HCD_08804
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIITISMKSYGLAEYLKSGKKQGDPYTRQEKDIVTHLYGNLDTFRHATNYLKKNKQWSKNYEHCVIGFSKTDMQILEKLPPQERTNALQDMALQVIKHRTTGYDLKHEVIAYAEVHDPKIKYRTDNKERLSHIHIGISYLNALDNTRLRTTFYNNSFIKDTLQKYIAKQYNLTYSTSNDKKQEPFKREWETKEFSQSHLARMELKESLKDIKSVDELKEFFKQNDIKYREVKTKNNHYFKVIDKEKYKHDINLRGKDFKHIELLTKGESSTKKDYYPDNLQTATQQELETILETYRQERTTFIDKRRSKQSKELLQQELERDLTQFNQAKQELEQNNHTNSIQISKPTYQQKLLSSYYKSYIDNDFKGFFVSKNKDYIDIKHNQKQIHIQDKGDSIVSLNHQANSLQEQVKIMLDLAIAKEWKLTELDIKGNADFKAEVKKQIAHRLKEQEPINLPNELQKMHENALQSTKNQKPTNVYLHHKKSHKPPLMNLI
SIO_010081: HCD_RS08680
subclass of: SO_0000673
so part of: HCD_RS08680
location: 12552..14036
location: region:12552-14036:1
so has part: feature:12552-14036:1:exon

WP_014660179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12552-14036:1:exon