Helicobacter cetorum MIT 99-5656 plasmid pHCD, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.
Sequence divergence and conservation in genomes of Helicobacter cetorum strains from a dolphin and a whale
Submitted (05-APR-2012) Molecular Microbiology, Washington University Medical School, 4940 Parkview Place, Saint Louis, MO 63110, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003482.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:32:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,780\nCDSs (total) :: 1,734\nGenes (coding) :: 1,653\nCDSs (with protein) :: 1,653\nGenes (RNA) :: 46\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 3\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 41 of 81\nPseudo Genes (incomplete) :: 45 of 81\nPseudo Genes (internal stop) :: 14 of 81\nPseudo Genes (multiple problems) :: 17 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000867435.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001278583.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015643655.1
COORDINATES: similar to AA sequence:RefSeq:WP_014661892.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_014661891.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014661888.1
COORDINATES: protein motif:HMM:NF017524.2
COORDINATES: protein motif:HMM:NF037421.2