Diorhabda sublineata isolate icDioSubl1.1 chromosome Y, icDioSubl1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Chrysomelidae; Galerucinae; Atysites; Diorhabda.
REFSEQ INFORMATION: The reference sequence is identical to\nCM047925.1.\nAssembly name: icDioSubl1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the United States Department of\nAgriculture on 2022/11/18. The original whole-genome shotgun\nproject has the accession JAPHNJ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: United States Department of Agriculture\nAssembly Date :: 03-OCT-2022\nAssembly Method :: HiFiAdapterFilt v. 2.0.0; HiFiASM v.\n 0.16.1; YaHS v. 1.1; Juicebox v. 1.11.08\nAssembly Name :: icDioSubl1.1\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_026230105.1-RS_2023_05\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 05/30/2023\n##Genome-Annotation-Data-END##
>200 individuals were collected in Sfax, Tunisia from Tamarix and have been kept in lab culture maintained by Palisade Insectary since 2008.
Dan Bean, Palisade Insectary, Colorado Dep. Agriculture
craniofacial development protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451973; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC130451974; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
uncharacterized LOC130451975; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451961; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
uncharacterized LOC130451977; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451978; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451979; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451980; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451981; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
uncharacterized LOC130451982; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451963; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451985; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451986; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451987; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451989; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451990; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451991; Derived by automated computational analysis using gene prediction method: Gnomon.
proteasome subunit beta type-5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 Proteins
uncharacterized LOC130451992; Derived by automated computational analysis using gene prediction method: Gnomon.
matrix metalloproteinase-16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451955; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451955, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC130451955, transcript variant X1
uncharacterized LOC130451994; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451995; Derived by automated computational analysis using gene prediction method: Gnomon.
THAP domain-containing protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451998; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451999; Derived by automated computational analysis using gene prediction method: Gnomon.
interstitial collagenase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
KRAB-A domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451957; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130452002; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein K02A2.6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130452005; Derived by automated computational analysis using gene prediction method: Gnomon.
reticulocyte-binding protein homolog 2a-like; Derived by automated computational analysis using gene prediction method: Gnomon.
reticulocyte-binding protein homolog 2a-like
uncharacterized LOC130451885; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451886; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent DNA helicase pif1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
uncharacterized LOC130451888; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins
52 kDa repressor of the inhibitor of the protein kinase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
52 kDa repressor of the inhibitor of the protein kinase-like
uncharacterized LOC130451891; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451892; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger BED domain-containing protein 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger BED domain-containing protein 5-like
uncharacterized LOC130451969; Derived by automated computational analysis using gene prediction method: Gnomon.
tigger transposable element-derived protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tigger transposable element-derived protein 1-like
uncharacterized LOC130451968; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC130451897; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451898; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451899; Derived by automated computational analysis using gene prediction method: Gnomon.
probable serine/threonine-protein kinase clkA; Derived by automated computational analysis using gene prediction method: Gnomon.
probable serine/threonine-protein kinase clkA
uncharacterized LOC130451905; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451906; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 Proteins
uncharacterized LOC130451911; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451912; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451913; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC130451913
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 Proteins
uncharacterized LOC130451916; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451917; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein DDB_G0287625-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein DDB_G0287625-like
uncharacterized LOC130451919; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451921; Derived by automated computational analysis using gene prediction method: Gnomon.
putative E3 ubiquitin-protein ligase protein PFF1365c; Derived by automated computational analysis using gene prediction method: Gnomon.
putative E3 ubiquitin-protein ligase protein PFF1365c
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68 Proteins
uncharacterized LOC130451928; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451967; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins
uncharacterized LOC130451933; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451934; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451935; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451965; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451965, transcript variant X2
uncharacterized LOC130451965, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
uncharacterized LOC130451960; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451960, transcript variant X2
uncharacterized LOC130451960, transcript variant X1
uncharacterized LOC130451960, transcript variant X3
uncharacterized protein LOC130451960 isoform X1
uncharacterized protein LOC130451960 isoform X2
uncharacterized LOC130451940; Derived by automated computational analysis using gene prediction method: Gnomon.
matrix metalloproteinase-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451943; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451944; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451945; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71 Proteins
uncharacterized LOC130451946; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451947; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451950; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451966; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC130451951; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins
uncharacterized LOC130451954; Derived by automated computational analysis using gene prediction method: Gnomon.