Planktothrix agardhii strain No.976 plasmid p5.
type: Entry
definition: Planktothrix agardhii strain No.976 plasmid p5.
sequence version: NZ_LR882957.1
sequence date: 2023-05-23
sequence: sequence
division: CON
label: NZ_LR882957.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA7326078
keyword: RefSeq
source: Planktothrix agardhii
organism: Planktothrix agardhii
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Planktothrix.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR882957.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 21:11:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,494\nCDSs (total) :: 4,437\nGenes (coding) :: 4,349\nCDSs (with protein) :: 4,349\nGenes (RNA) :: 57\nrRNAs :: 3, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 4, 4 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 18 of 88\nPseudo Genes (incomplete) :: 72 of 88\nPseudo Genes (internal stop) :: 9 of 88\nPseudo Genes (multiple problems) :: 10 of 88\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 5311
topology: linear
so has quality: SO_0000987
location: 1..5311
location: region:1-5311:1
RO_0002162: 1160

NZ_LR882957
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA7326078
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Blom, J.
journal: Submitted (29-SEP-2020) JLU, JLU, Justus-Liebig-University Giessen, Bioinformatics and Systems Biology, Heinrich-Buff-Ring 58, 35392 Giessen, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:5311:1
position: 5311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-5311:1:source
so part of: sequence
organism: Planktothrix agardhii
mol type: genomic DNA
strain: No.976
plasmid: p5

1160
type: Taxonomy
SIO_000068: taxonomy

NMG88_RS22380
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22380
old locus tag: NO976_04469
so part of: sequence
location: <1..226
location: region:1-226:1
so has part: feature:1-226:1:exon
subclass of: SO_0000010

77290613
type: Gene
SIO_000068: ncbigene

position:226:1
position: 226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-226:1:exon

NMG88_RS22380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22380
old locus tag: NO976_04469
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 2
transl table: 11
product: hypothetical protein
translation: KCLRSMAMNHKQIALLIKDEEQRPYAEIIIRAVSFVHRIEELAPLGGIESDDKMQPEAFYELLKQLGFKLHLVK
SIO_010081: NMG88_RS22380
subclass of: SO_0000673
so part of: NMG88_RS22380
location: <1..226
location: region:1-226:1
so has part: feature:1-226:1:exon

WP_254035912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-226:1:exon

NMG88_RS22385
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22385
old locus tag: NO976_04470
so part of: sequence
location: 311..676
location: region:311-676:1
so has part: feature:311-676:1:exon
subclass of: SO_0000010

77290614
type: Gene
SIO_000068: ncbigene

position:311:1
position: 311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:676:1
position: 676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311-676:1:exon

NMG88_RS22385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22385
old locus tag: NO976_04470
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAISGSRSIETLNPEALTRINKIIELNYEILIGDAPGVDTLVQTYLDSVNYDNVQVWFAFNTLRNNVGNWGTVKVQGNYSLRDKLMMSSADFGLAIWDGKSPGTQRNIKQLGKRCRVVLIN
SIO_010081: NMG88_RS22385
subclass of: SO_0000673
so part of: NMG88_RS22385
location: 311..676
location: region:311-676:1
so has part: feature:311-676:1:exon

WP_254035913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:311-676:1:exon

NMG88_RS22390
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22390
old locus tag: NO976_04471
so part of: sequence
location: 772..1011
location: region:772-1011:1
so has part: feature:772-1011:1:exon
subclass of: SO_0000010

77290615
type: Gene
SIO_000068: ncbigene

position:772:1
position: 772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1011:1
position: 1011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772-1011:1:exon

NMG88_RS22390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22390
old locus tag: NO976_04471
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNELNGQWLECGGKPCFCPDNSPSPYDYLWDDDIEDIEETEDIEETKEVIEFREKCKLISRYSSLIELEIESNSRYDEF
SIO_010081: NMG88_RS22390
subclass of: SO_0000673
so part of: NMG88_RS22390
location: 772..1011
location: region:772-1011:1
so has part: feature:772-1011:1:exon

WP_254035914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:772-1011:1:exon

NMG88_RS22395
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22395
old locus tag: NO976_04472
so part of: sequence
location: 1117..1659
location: region:1117-1659:1
so has part: feature:1117-1659:1:exon
subclass of: SO_0000010

77290616
type: Gene
SIO_000068: ncbigene

position:1117:1
position: 1117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1659:1
position: 1659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1117-1659:1:exon

NMG88_RS22395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22395
old locus tag: NO976_04472
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009786213.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKTKLKFSTELRKLTTVQNPEALRAYCQSLKSQLVADPSNYAKGRYRLWLFHEVDFRDGSLTKGYSDQRLIDFSQRVYPGCDIGLLTYHGPVTDDKVSDGKISLHRDHTYSNPKAISVNLGEAIFSYGEPEQTDYLLQDGDITEFNCKVLHAVTEIRSAERFSIVFWKLNEAKGYKPLT
SIO_010081: NMG88_RS22395
subclass of: SO_0000673
so part of: NMG88_RS22395
location: 1117..1659
location: region:1117-1659:1
so has part: feature:1117-1659:1:exon

WP_254035915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1117-1659:1:exon

NMG88_RS22400
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22400
old locus tag: NO976_04473
so part of: sequence
location: 1757..2251
location: region:1757-2251:1
so has part: feature:1757-2251:1:exon
subclass of: SO_0000010

77290617
type: Gene
SIO_000068: ncbigene

position:1757:1
position: 1757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2251:1
position: 2251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1757-2251:1:exon

NMG88_RS22400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22400
old locus tag: NO976_04473
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009786212.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTAFITGHRCLIQPKAELGINQLTDLAIERGFNCFLSGMAIGTDNKAAQIWSQRGLNWKAIFPCPEQRYGHSLYRKQREKLLATATEVKILYPEYSDGVMQARDQYLVNNSSLGLAVWDGRTTGGTYLTISMARKAKLPVIIFNPKTELIEIEEPLKQLNLFD
SIO_010081: NMG88_RS22400
subclass of: SO_0000673
so part of: NMG88_RS22400
location: 1757..2251
location: region:1757-2251:1
so has part: feature:1757-2251:1:exon

WP_026798281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1757-2251:1:exon

NMG88_RS22405
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22405
old locus tag: NO976_04474
so part of: sequence
location: 2324..2674
location: region:2324-2674:1
so has part: feature:2324-2674:1:exon
subclass of: SO_0000010

77290618
type: Gene
SIO_000068: ncbigene

position:2324:1
position: 2324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2674:1
position: 2674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2324-2674:1:exon

NMG88_RS22405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22405
old locus tag: NO976_04474
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009788064.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYQRHSTQWTIYSAFHGADFWLIAKHNREMLGKPIREYKKGCFGMLAPKNIDPNYGFYLCQYLYNEGFWQSYSYGSLELNHLRITDVREVFKPDSYLLSPTGTLIVLSSTCQLATA
SIO_010081: NMG88_RS22405
subclass of: SO_0000673
so part of: NMG88_RS22405
location: 2324..2674
location: region:2324-2674:1
so has part: feature:2324-2674:1:exon

WP_254035916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2324-2674:1:exon

NMG88_RS22410
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22410
old locus tag: NO976_04475
so part of: sequence
location: 2702..3016
location: region:2702-3016:1
so has part: feature:2702-3016:1:exon
subclass of: SO_0000010

77290619
type: Gene
SIO_000068: ncbigene

position:2702:1
position: 2702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3016:1
position: 3016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2702-3016:1:exon

NMG88_RS22410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22410
old locus tag: NO976_04475
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: METKQTQTKLNLDIDVDVVIERLQLDGVFECDRIPQHLVKQALSKWLSKIEDSINNEPDWWIRQFESKAFKSSIESFLDDYSQDSEGIEQSEDSEKDIEFAALS
SIO_010081: NMG88_RS22410
subclass of: SO_0000673
so part of: NMG88_RS22410
location: 2702..3016
location: region:2702-3016:1
so has part: feature:2702-3016:1:exon

WP_087882273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2702-3016:1:exon

NMG88_RS22415
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22415
old locus tag: NO976_04476
so part of: sequence
location: 3143..3679
location: region:3143-3679:1
so has part: feature:3143-3679:1:exon
subclass of: SO_0000010

77290620
type: Gene
SIO_000068: ncbigene

position:3143:1
position: 3143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3679:1
position: 3679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3143-3679:1:exon

NMG88_RS22415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22415
old locus tag: NO976_04476
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009788172.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIPNKSQFLSELQVDSELDLELSTDPNQSIRKFVEHKQVIKFLSEQLSEIESDAIVEALAIHQDNMNNNKNNVIYQDSIAKVVICFRQKYVSSKDSPELAKLEELIRSEEIIILKRNGEKLNKLDSEIEELENQIKGLEVRKEKLLSSKRIESLKAEYQQLIQELAYKEPGLNISFKR
SIO_010081: NMG88_RS22415
subclass of: SO_0000673
so part of: NMG88_RS22415
location: 3143..3679
location: region:3143-3679:1
so has part: feature:3143-3679:1:exon

WP_254035917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3143-3679:1:exon

NMG88_RS22420
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22420
old locus tag: NO976_04477
so part of: sequence
location: 3823..4554
location: region:3823-4554:1
so has part: feature:3823-4554:1:exon
subclass of: SO_0000010

77290621
type: Gene
SIO_000068: ncbigene

position:3823:1
position: 3823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4554:1
position: 4554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3823-4554:1:exon

NMG88_RS22420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22420
old locus tag: NO976_04477
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016044862.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNIIQIDGYGFLIPSSPSRYRGNCSKEWGQFVGGNTNNMTCSEAEKAGLTKGKFVEMAVCQISTKILTFEPNYVNEEFLEIWGIPVGGEMKTQFHEKASELSTFLLHRQSKDKFQLLTEQFVKKALNSWASEGMKDNFNKYSLEKIRESYNNLIFRFEMTKTEGKHGNYFYISGSYREPNGELELTALKATKEIQSMDVCNDQRLVENQAKCFAAIAETELNQAPVTQQLNATNSKQLKSAKA
SIO_010081: NMG88_RS22420
subclass of: SO_0000673
so part of: NMG88_RS22420
location: 3823..4554
location: region:3823-4554:1
so has part: feature:3823-4554:1:exon

WP_254035918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3823-4554:1:exon

NMG88_RS22425
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS22425
so part of: sequence
location: 4617..>5311
location: region:4617-5311:1
so has part: feature:4617-5311:1:exon
subclass of: SO_0000010

77290622
type: Gene
SIO_000068: ncbigene

position:4617:1
position: 4617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4617-5311:1:exon

NMG88_RS22425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS22425
inference: COORDINATES: protein motif:HMM:NF019146.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5131 family protein
translation: MTTTISWCDETINPIVGCSRISEGCQKCYAETAAKTARLQQFPQYQKVASWNGTVEFVENQLDRLLRWKKGKRIFLCSMADMFHENVPFEWIEQIFSTIEDFPQHTFQILTKRPERMIEFFDWYIARNSDHSVGLQWSIPDNIWLGVSCENQAMADKRIPLLMKIPAKVRFLSCEPLLEPINLSKFLPIEWSEIAEDWIESWPGIGSYSTNDYPSWVIAGGESGAGSRPCH
SIO_010081: NMG88_RS22425
subclass of: SO_0000673
so part of: NMG88_RS22425
location: 4617..>5311
location: region:4617-5311:1
so has part: feature:4617-5311:1:exon

WP_254035919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4617-5311:1:exon