Planktothrix agardhii strain No.976 plasmid p3.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Planktothrix.
Submitted (29-SEP-2020) JLU, JLU, Justus-Liebig-University Giessen, Bioinformatics and Systems Biology, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nLR882955.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 21:11:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,494\nCDSs (total) :: 4,437\nGenes (coding) :: 4,349\nCDSs (with protein) :: 4,349\nGenes (RNA) :: 57\nrRNAs :: 3, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 4, 4 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 18 of 88\nPseudo Genes (incomplete) :: 72 of 88\nPseudo Genes (internal stop) :: 9 of 88\nPseudo Genes (multiple problems) :: 10 of 88\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_015783161.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012627892.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015217586.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: similar to AA sequence:RefSeq:WP_015217585.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747903.1
GO:0003674 - molecular_function [Evidence IEA]
DevR family CRISPR-associated autoregulator
COORDINATES: similar to AA sequence:RefSeq:WP_015217583.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479980.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009455311.1
TIGR03986 family CRISPR-associated RAMP protein
COORDINATES: similar to AA sequence:RefSeq:WP_015217580.1
COORDINATES: similar to AA sequence:RefSeq:WP_019487260.1
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_009455314.1
COORDINATES: similar to AA sequence:RefSeq:WP_009455315.1
COORDINATES: similar to AA sequence:RefSeq:WP_007357726.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015180904.1
COORDINATES: similar to AA sequence:RefSeq:WP_012175654.1
COORDINATES: similar to AA sequence:RefSeq:WP_016044802.1
COORDINATES: similar to AA sequence:RefSeq:WP_009630628.1
COORDINATES: protein motif:HMM:NF039475.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877500.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006625072.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012412053.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_042152754.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015163163.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116112.1
ssl1498 family light-harvesting-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_009546332.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.