Planktothrix agardhii strain No.976 plasmid p1.
type: Entry
definition: Planktothrix agardhii strain No.976 plasmid p1.
sequence version: NZ_LR882953.1
sequence date: 2023-05-23
sequence: sequence
division: CON
label: NZ_LR882953.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA7326078
keyword: RefSeq
source: Planktothrix agardhii
organism: Planktothrix agardhii
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Planktothrix.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR882953.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 21:11:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,494\nCDSs (total) :: 4,437\nGenes (coding) :: 4,349\nCDSs (with protein) :: 4,349\nGenes (RNA) :: 57\nrRNAs :: 3, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 4, 4 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 18 of 88\nPseudo Genes (incomplete) :: 72 of 88\nPseudo Genes (internal stop) :: 9 of 88\nPseudo Genes (multiple problems) :: 10 of 88\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 15761
topology: linear
so has quality: SO_0000987
location: 1..15761
location: region:1-15761:1
RO_0002162: 1160

NZ_LR882953
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA7326078
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Blom, J.
journal: Submitted (29-SEP-2020) JLU, JLU, Justus-Liebig-University Giessen, Bioinformatics and Systems Biology, Heinrich-Buff-Ring 58, 35392 Giessen, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15761:1
position: 15761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15761:1:source
so part of: sequence
organism: Planktothrix agardhii
mol type: genomic DNA
strain: No.976
plasmid: p1

1160
type: Taxonomy
SIO_000068: taxonomy

NMG88_RS21685
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS21685
so part of: sequence
location: complement(<1..4123)
location: region:1-4123:-1
so has part: feature:1-4123:-1:exon
subclass of: SO_0000010

77290474
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4123:-1
position: 4123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-4123:-1:exon

NMG88_RS21685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS21685
inference: COORDINATES: protein motif:HMM:NF012873.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amino acid adenylation domain-containing protein
translation: MAICPLSVVQQRLWAIHQFAPTSKAYNRYSALRLKYSLDFNRWKATWQAIIQRHPILRTAYGQDNTGEPVQFVHQVADVPMEVINASTWSQEELQKEILDRADRLHDLEKGRVIALYLFQTTETNFIQVLTIHQIAADEATQDLLLKEFNQLYLGHELDEALAYSDFVNWELDFIKSTQAEAHQQYWQDKLAGELPILALPTDKPRPKVFSFNGNSYFLKLDQSLVLRLKEIATENIAVSSIALATFYVLLHRYSSQEDILITVPMQNRGGQAAFADIAGHFTDLVALRLTPTKDMTFEMLLEQVNQALSAGISHEGVNAFSTKLVKHLDLQRDFSQIPVSSVMFNWRKFSGSDLDKPIESHGESLPFEFYSLEEQRGVECDIKLSFIDVGSELTLLWQYNSDLFSAEAIERIAQHYLNLLEGVINTPKASLHQLSLMTEKERHQLLVEWNNTSANYPQHQCIHQLFEEQVRKTPDAIAVVFEQEFLTYQELNNRANQVAHHLQGLGVQQESLVGICIERSLDMMVGLLGILKAGATYVPLDPNYPMERIEYILERSQAKFLITSSQILEKLPPHQAQLVCLDQEWSTISQKSPENPESEVIPEQLCYVIFTSGSTGEPKGVEIAHRSLVNFLWSMRSEPGFTHKDCLVAVTTISFDIHTLELYLPLITGAKVVLASSSVAADGLSLATLIADHDATVMQATPATWRILLSTNWQGKDNLKAICGGESLPQELADRLLEKVGCLWNIYGPTETTVWSATGQIKKNRILGYSNITESIGRPIANTQIYILDSSLQPVPIGVPGDLYIGGCGVARGYFKRPDLTAERFLPDPFLSNSRMYQTGDLARYLPDGTIEYLGRIDNQVKIRGFRIELGEIETALEKHHHVDQCVTIPRQDDTGNERLVAYIIPKQNAQVDAASEVTKRAFQDEEQNILQEWQIAWDNAYNQTETEQESTLNISGWDSSYTGELIPAEEMREWVNSIVDRIKQHQPQRVLEIGCGTGMLLLRIAPTCQSYWGIDAAQQGLNYIQQQLNTQPGNWSHIQLKQRLADDLSEIATQSFDTIVINSVVQYFPNIDYLVTVLEQAVKAVMSGGRIFVGDVRSLPLLSAFHSSVQFYKAADDLSLARLKQQIAKDQQLDQELVIDPAFFTALQSYLPTITQVEIQLKRGFSHNEMTKFRYDVVLHVGSEVIPKSSQAIDWEGDHLTIDQVISTLKTTEPANLVVRNVPNARLVADIQLLKLLESDQDIQTVGELRQSLHQQLSTGIEPESWWLLEIPYTIKINFATDALDRYDIYFYHQTKNVAQPLPIETSDHQRTKSWYMYANNPAFGQFAISLAPKLRNYLNDKLPDYMMPSAFVTLTSFPLTPNGKIDRRALP
SIO_010081: NMG88_RS21685
subclass of: SO_0000673
so part of: NMG88_RS21685
location: complement(<1..4123)
location: region:1-4123:-1
so has part: feature:1-4123:-1:exon

WP_254035830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-4123:-1:exon

NMG88_RS21690
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS21690
old locus tag: NO976_04331
so part of: sequence
location: 4247..11764
location: region:4247-11764:1
so has part: feature:4247-11764:1:exon
subclass of: SO_0000010

77290475
type: Gene
SIO_000068: ncbigene

position:4247:1
position: 4247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11764:1
position: 11764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4247-11764:1:exon

NMG88_RS21690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS21690
old locus tag: NO976_04331
inference: COORDINATES: protein motif:HMM:NF012901.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I polyketide synthase
translation: MDSIDQSAVAIIGMAGRFPGATNIDELWRNVKSGLESITFFSDEELLSAGVSPNIINNPNYVNASPTLPDLEKFDAFFFDYSAKEALYMDPQQRIFLECAWEALENSGYQAGTSKQTIGVYGGSSISLYLLNDIIHGNQVYAGHMNTSKESVVFGGNVPESLTTRVAYKLNLTGPAIHVSTACSTSLVAVHMACQSLLNGECEIALAGGVSYLGSQKEGYFYEEGLVLSPDGHCRSFDAQGKGTLWGNGVGIIVLKMLDEAVADGDYIHAVIKGSAVNNDGNLKVSYSAPSVDAQARVIYQAQDVADIDPESITYIEAHGTATSLGDPIEIAALTQAFRAKTAKNRYCAIASLKSNIGHLSEASGIAGLIRTVLALRHKQIPASLHFETPNPHIDFENSPFYVNTELKAWERNGSPRRAGINSFGMGGTNAHVVLEEWDVSQKTDRTNQRRQQLFLLSAKTPTALETMTTNLVNYLDQYPELNREDVAYTLALGRKAFKHRRIVVLDDNESLGDVVVSQAGKRTLTNSGGVKTRSVVFMFSGQGSQYVNMAKELYETEAIFREHLDHCCELLTPHLGLDLREILYPVPEQIAVATEQLKQTSITQPALFAIEYSLAKLWMSWGIQPVALIGHSIGEYVAATIAEVFSLEDALMIVAQRGKLMQSMPAGAMLAVPLSEQEVKPMLVGTGLEIATINSPANCVVSGMTDTLTNFAERLADKGIEGRHLHTSHAFHSGMMEPILDPFIKVLKTVELNAPKIPFVSNLTGTWITVEQATDPHYYGQHLRSCVRFADGLTEFFEDSEQILLEVGPGNTLSTLTKRHPQKTSEQITLTSLRHPQEDTADLTLLLKSLGQLWLAGVELDWDNFYGEEQHYRVPLPTYPFERQRYWIEPKKQKLEQIYQNKKSDIADWFYQTSWKRSNLPTKESGAIASPVLVFVDQVGLGSQLVQQLTIQSQDIIAVKSGEKFAQIENNIYTINPVEPADYQKVIQSLQERNLFPQTIIHLWAVTPPPVAEETLEETLKQVQQFEDIGFYSLLYLVQALGEQNIETDINFLVISNQLQTVTGEEMIVPAKATLIGAVRVISQEYNNIHCRCIDLVLSTQDYNKVITQLIAELQHDIPDQLIAYRENSRWVESFEPIPLQPSTCNELPFKVQGVYLITGGMGGMGLVFAEYLAKTLQAKLVLISRSPLPERTEWNHWLTTHTEDDPTSRKILKMQKFEAEGSEVLLLSADVTNVAEMANAIATARQKFGVIHGVIHTAGLPGGGVMQLKTRDVAQRVLAPKVAGTIILDTLLKDEPLDFMLLCSSLESVLGTAGQIDYCGANNFLDTYAQAQTIKGDRLTLSINWDAWQQVGMAVETAQYGLDNKILEIKALNHHLFDKCIVETNQAVYMGILKPEIHWIVGEHVVLNLPSLVGTAYLEIARSVYELHSGESTVELQDVYFLQFLFIEGDQKELRVILKPEVASEKMSFSIQTLNADSGEWVEHAQGKIVPPNFPETVKYDINELEASCNVNMIVPDLQALPDYTHYGPRWLSNIKWRKANDDHNLALMELPAEFAHDLEQYKFHPSMVDTATYVVADVLPNELTSQLPFFKADSTYLPYFYERVQMKGALPGKFYSYTSRTLKGRDWSINLSFISPDGVEVVVIDNYVLKYTDSAYSIKENQDARQAKQRQTQKLEATLESAILPEEGVECLVRTLQSQMPQIIVSTLGVDYQRSLLKQADAADELEAAILFERPQLSQKFAAPQTETEKAIAVIWEQVLGVKGIGIDDNFFDLGGDSLIIVQILQKLRQTLKKDLTINDLLNSNTIAELAQIIDPESAETSTQLPSCIVKFRQGSAGVTPIFLVHPIAGTIHNYVNLPNCLPSDQPLYAIQHPKWTDELVHCQTIEELATYYLEAVRQVQPQGPYFLGGYSGGVYATYEMAQQLTAVGEKVAFLALIDKPHWETDADKPNWHNPDFGTDLETMLYYSDLRTPKANGESHLNDYLQLNSFEERFQYF…
SIO_010081: NMG88_RS21690
subclass of: SO_0000673
so part of: NMG88_RS21690
location: 4247..11764
location: region:4247-11764:1
so has part: feature:4247-11764:1:exon

WP_254035831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4247-11764:1:exon

NMG88_RS21695
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS21695
old locus tag: NO976_04332
so part of: sequence
location: 11798..12943
location: region:11798-12943:1
so has part: feature:11798-12943:1:exon
subclass of: SO_0000010

77290476
type: Gene
SIO_000068: ncbigene

position:11798:1
position: 11798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12943:1
position: 12943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11798-12943:1:exon

NMG88_RS21695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS21695
old locus tag: NO976_04332
EC number: 1.1.1.-
inference: COORDINATES: protein motif:HMM:NF012678.2
GO function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0018455 - alcohol dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron-containing alcohol dehydrogenase
translation: MNNFTAYIPTQLHFGQNSVNELGKHAEKIGCHALLVYGCGSAFKNGSYFDTVDQLKQHNIKITECGGIYANPTVECVSKAAQLGRENGVDMVVAIGGGSVIDAAKVIAICVADECDPWTIMTRNHEPQKAVPILAILTLAATGTEMNPAAVILNPYTKQKLGFRHNFMYPTHSYLDPSYTLSVPTNYTAYGIVDLICHCLEAWFGEGDATLSDRFTIAIIQEALVYGPALMNDMGSFDLRSKIMWAATNALNNMTTYGRSSPDWGVHILAHNLSVLFNTAHGATLSIIYPAWLKVMRDRAKHRIVKLGESLFDTNDVDMTINAIENFFASLGSPVRCQEAKIDTAYQQDILDLMNKNQAGGLNYQLSQAERKKILDYAFSD
SIO_010081: NMG88_RS21695
subclass of: SO_0000673
so part of: NMG88_RS21695
location: 11798..12943
location: region:11798-12943:1
so has part: feature:11798-12943:1:exon

WP_254034954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11798-12943:1:exon

NMG88_RS21700
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS21700
old locus tag: NO976_04333
so part of: sequence
location: 13039..13938
location: region:13039-13938:1
so has part: feature:13039-13938:1:exon
subclass of: SO_0000010

77290477
type: Gene
SIO_000068: ncbigene

position:13039:1
position: 13039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13938:1
position: 13938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13039-13938:1:exon

NMG88_RS21700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS21700
old locus tag: NO976_04333
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008188823.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phytanoyl-CoA dioxygenase family protein
translation: MNNTKTALPKKLDEPISIRPLTKDELNFYRENGYVIVRQLFDPEEMELVRAVCQSDPKLKEVFKPVIDNDGKTWGASVWAGLNDSLVSIVTQTARMVSAAEAITGKSCYFMYSKIVQKAAYDDAIVYWHQGFPGWYYDGCPFPDLFASFSIAVNRNTKDNGCVQVIEKSHLLGRIDHISEGNSDKVRCDPKQINRALEHLKVVDCEMETGDVLFFHGNTIHGSLENKTGDVRILMHGHYNALINRPSEDKPDSHRCVPMKKLPDSAIKDGLYTSGFESDSQNWNWYNNVPEDYVKEPQH
SIO_010081: NMG88_RS21700
subclass of: SO_0000673
so part of: NMG88_RS21700
location: 13039..13938
location: region:13039-13938:1
so has part: feature:13039-13938:1:exon

WP_254034955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13039-13938:1:exon

NMG88_RS21705
type: Gene
subclass of: SO_0000704
RO_0002162: 1160
locus tag: NMG88_RS21705
old locus tag: NO976_04334
so part of: sequence
location: 14371..15237
location: region:14371-15237:1
so has part: feature:14371-15237:1:exon
subclass of: SO_0000010

77290478
type: Gene
SIO_000068: ncbigene

position:14371:1
position: 14371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15237:1
position: 15237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14371-15237:1:exon

NMG88_RS21705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1160
locus tag: NMG88_RS21705
old locus tag: NO976_04334
inference: COORDINATES: protein motif:HMM:NF036686.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISGSPDSQQSQTGDQHPSLNLGNVSSLPAVGFISPPAWLDPAPYEFTTVIQEPVLTQQAIPLLPDFDFSFENLASEVLAEQLCLCARTLQAAGCSVVVQVGNPFTWVNVTSESEAWRRNERIASATNLPTIMTTLAVVEALRAHQANRIAITTTFYSQTWNKRFTDFMELCGFNVIHASNFYQQGLVKQINPEDAEEHFRYTDLDNPVEALANLIKASVQSVKEKAPDCEAIAIVGTGARTLDILLSLEAITQCPVVPADTSVYWWVAQQLNLTLLPTMGRFRDLSL
SIO_010081: NMG88_RS21705
subclass of: SO_0000673
so part of: NMG88_RS21705
location: 14371..15237
location: region:14371-15237:1
so has part: feature:14371-15237:1:exon

WP_254034956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14371-15237:1:exon