Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence.
Cronobacter dublinensis subsp. dublinensis LMG 23823
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter.
Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain
Submitted (31-JUL-2015) Nestle Institute of Health Sciences, EPFL Innovation Park, Building G, Lausanne 1015, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP012267.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.0\nGenome Coverage :: 42\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/11/2022 15:20:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,382\nCDSs (total) :: 4,267\nGenes (coding) :: 4,224\nCDSs (with protein) :: 4,224\nGenes (RNA) :: 115\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 11\nPseudo Genes (total) :: 43\nCDSs (without protein) :: 43\nPseudo Genes (ambiguous residues) :: 0 of 43\nPseudo Genes (frameshifted) :: 18 of 43\nPseudo Genes (incomplete) :: 25 of 43\nPseudo Genes (internal stop) :: 14 of 43\nPseudo Genes (multiple problems) :: 13 of 43\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010427259.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007679865.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007679862.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727557.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572562.1
COORDINATES: similar to AA sequence:RefSeq:WP_013196230.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750736.1
COORDINATES: similar to AA sequence:RefSeq:WP_014882378.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854483.1
COORDINATES: similar to AA sequence:RefSeq:WP_012016338.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015387240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798797.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750708.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007750706.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_007750705.1
COORDINATES: similar to AA sequence:RefSeq:WP_015369713.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_011998966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018918687.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007873206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873218.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002434002.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007667222.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:YP_005227577.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_004152316.1
type VI secretion system protein TssL, short form
COORDINATES: similar to AA sequence:RefSeq:WP_007755160.1
COORDINATES: similar to AA sequence:RefSeq:YP_005226602.1
Hcp family type VI secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_007712520.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016158941.1
type VI secretion system tip protein VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_007867434.1
COORDINATES: similar to AA sequence:RefSeq:WP_007896872.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227552.1
COORDINATES: similar to AA sequence:RefSeq:WP_007712530.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873250.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227549.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_000553779.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_020806091.1
type VI secretion system lipoprotein TssJ
COORDINATES: similar to AA sequence:RefSeq:WP_011998990.1
thiol:disulfide interchange protein DsbG
COORDINATES: similar to AA sequence:RefSeq:WP_007780653.1
COORDINATES: similar to AA sequence:RefSeq:WP_005127954.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767577.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873266.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:YP_005227439.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007775692.1
COORDINATES: similar to AA sequence:RefSeq:WP_004864750.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007679744.1
PTS beta-glucoside transporter subunit IIABC
COORDINATES: similar to AA sequence:RefSeq:WP_007780970.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007679729.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020882406.1
COORDINATES: similar to AA sequence:RefSeq:WP_002437202.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002437201.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002435636.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF011572.0
COORDINATES: protein motif:HMM:NF018352.2
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_016535920.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815829.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007728681.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767670.1
COORDINATES: similar to AA sequence:RefSeq:WP_020799106.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767674.1
COORDINATES: similar to AA sequence:RefSeq:WP_020094430.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013511520.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755253.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_007733166.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755256.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755257.1
GO:0071468 - cellular response to acidic pH [Evidence IEA]
biofilm development regulator YmgB/AriR family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012815836.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007896783.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007755265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007679694.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873298.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733195.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012815845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011999014.1
GO:0015444 - P-type magnesium transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005224890.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733211.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512487.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017802039.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015387273.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007733217.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_007873333.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015740474.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007669598.1
COORDINATES: similar to AA sequence:RefSeq:WP_007706017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873344.1
citrate:6-N-acetyl-6-N-hydroxy-L-lysine ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_001287497.1
COORDINATES: similar to AA sequence:RefSeq:WP_001015709.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_017383315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011069568.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015387283.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_003855844.1
COORDINATES: similar to AA sequence:RefSeq:WP_007706040.1
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_007706046.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008500123.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007374270.1
COORDINATES: similar to AA sequence:RefSeq:WP_019081662.1
COORDINATES: protein motif:HMM:NF025298.2
COORDINATES: similar to AA sequence:RefSeq:WP_015740508.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740509.1
COORDINATES: protein motif:HMM:NF016702.2
VENN motif pre-toxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007669648.1
COORDINATES: similar to AA sequence:RefSeq:WP_008433672.1
COORDINATES: protein motif:HMM:NF026871.2
polymorphic toxin type 33 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002213829.1
COORDINATES: similar to AA sequence:RefSeq:WP_020456975.1
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_015740498.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727699.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705709.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705710.1
ParB/Srx family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007755088.1
COORDINATES: similar to AA sequence:RefSeq:WP_007670465.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705721.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767393.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727715.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798711.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998932.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727725.1
COORDINATES: similar to AA sequence:RefSeq:WP_013096847.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750688.1
COORDINATES: similar to AA sequence:RefSeq:WP_017456660.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798731.1
COORDINATES: similar to AA sequence:RefSeq:WP_004248465.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007750841.1
COORDINATES: similar to AA sequence:RefSeq:WP_017457391.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457642.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998940.1
ABC transporter six-transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013812926.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007767412.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767414.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767415.1
COORDINATES: similar to AA sequence:RefSeq:WP_004935508.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750823.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005227583.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767434.1
COORDINATES: similar to AA sequence:RefSeq:WP_004180187.1
COORDINATES: protein motif:HMM:NF028384.2
COORDINATES: similar to AA sequence:RefSeq:WP_007798759.1
COORDINATES: similar to AA sequence:RefSeq:WP_012968478.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750815.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854451.1
COORDINATES: similar to AA sequence:RefSeq:WP_007780726.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854457.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815787.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873161.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227219.1
dicarboxylate transporter/tellurite-resistance protein TehA
COORDINATES: similar to AA sequence:RefSeq:WP_015366509.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387237.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750780.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750777.1
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007705786.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998954.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705788.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798782.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007750772.1