Streptomyces phaeoluteigriseus strain Qhu-M197 plasmid unnamed2, complete sequence.
type: Entry
definition: Streptomyces phaeoluteigriseus strain Qhu-M197 plasmid unnamed2, complete sequence.
sequence version: NZ_CP099470.1
sequence date: 2023-07-05
sequence: sequence
division: CON
label: NZ_CP099470.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN29051995
keyword: RefSeq
source: Streptomyces phaeoluteigriseus
organism: Streptomyces phaeoluteigriseus
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces aurantiacus group.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP099470.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Hifiasm v. v0.14; Circlator v. v1.5.5;\n Pilon v. v1.22\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 68.51291x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/05/2023 05:05:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,094\nCDSs (total) :: 8,000\nGenes (coding) :: 7,682\nCDSs (with protein) :: 7,682\nGenes (RNA) :: 94\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 3\nPseudo Genes (total) :: 318\nCDSs (without protein) :: 318\nPseudo Genes (ambiguous residues) :: 0 of 318\nPseudo Genes (frameshifted) :: 146 of 318\nPseudo Genes (incomplete) :: 257 of 318\nPseudo Genes (internal stop) :: 34 of 318\nPseudo Genes (multiple problems) :: 101 of 318\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21680
topology: linear
so has quality: SO_0000987
location: 1..21680
location: region:1-21680:1
RO_0002162: 114686

NZ_CP099470
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN29051995
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of soil microorganisms Streptomyces sp. Qhu-M197 isolated from Alpine meadows habitats on the Tibetan Plateau
author: Zhang, B.
author: Xiang, X.
author: Fan, J.
journal: Unpublished

2
title: Direct Submission
author: Zhang, B.
author: Xiang, X.
author: Fan, J.
journal: Submitted (15-JUN-2022) Faculty of Eco-Environmental Engineering, qinghaiuniversity, No. 251 Ningda Road, Chengbei District, Xining City, Qinghai Province 810000, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21680:1
position: 21680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-21680:1:source
so part of: sequence
organism: Streptomyces phaeoluteigriseus
mol type: genomic DNA
strain: Qhu-M197
isolation source: soil
plasmid: unnamed2
country: China:Qinghai
collection date: 2019-08-15

114686
type: Taxonomy
SIO_000068: taxonomy

NFX46_RS40295
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40295
old locus tag: NFX46_40295
so part of: sequence
location: 13..999
location: region:13-999:1
so has part: feature:13-999:1:exon
subclass of: SO_0000010

position:13:1
position: 13
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:999:1
position: 999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13-999:1:exon

NFX46_RS40295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40295
old locus tag: NFX46_40295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006375028.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TniB family NTP-binding protein
translation: MTTWEAFQAFATTPVATPPPHGAPPRSLEERLAYHSRFVTVRTPAIDALAKNVRTLMILGRHQTVTARPSLIVTGPAGAGKTTALLQVGRACHLAHTRRHGATAVAGQVPVAYVLVPPAASAKTLAAEFARYLGIPVAAGMSQAQITNSVCHTYTAAGVQLVMIDEIHRLNPRTTTGAQSADLIKDLTERIGATFVYAGIDVTTTPLFTGVRGAQLAGRASLIDCASFPARLGESEPFRDLVKAMETALDLRHHRPGTLPQLAPYLHERTAGSIGSLARLIRQAAITALADGTERITKTTLDAIRLDHLAEQHYRPHNWPRSRSTSTS
SIO_010081: NFX46_RS40295
subclass of: SO_0000673
so part of: NFX46_RS40295
location: 13..999
location: region:13-999:1
so has part: feature:13-999:1:exon

WP_252551196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13-999:1:exon

NFX46_RS40300
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40300
old locus tag: NFX46_40300
so part of: sequence
location: complement(1137..1352)
location: region:1137-1352:-1
so has part: feature:1137-1352:-1:exon
subclass of: SO_0000010

position:1137:-1
position: 1137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1352:-1
position: 1352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1137-1352:-1:exon

NFX46_RS40300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40300
old locus tag: NFX46_40300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVGVVVGGEAWQRAGEVGERDAGDGGEVAGGGVVEAEFGGRQGAVAVEGDAGAVEELGQRQLVGVSEALGV
SIO_010081: NFX46_RS40300
subclass of: SO_0000673
so part of: NFX46_RS40300
location: complement(1137..1352)
location: region:1137-1352:-1
so has part: feature:1137-1352:-1:exon

WP_252551195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1137-1352:-1:exon

NFX46_RS40305
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40305
old locus tag: NFX46_40305
so part of: sequence
location: 1553..2044
location: region:1553-2044:1
so has part: feature:1553-2044:1:exon
subclass of: SO_0000010

position:1553:1
position: 1553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2044:1
position: 2044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1553-2044:1:exon

NFX46_RS40305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40305
old locus tag: NFX46_40305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPELAAAHHDHQRLLRRPRAATAWTAARAITTRWYDHDQHLTHRWRQRLNPLCAANPHLTTTGSASPALLTRDLITYPEPVALAHTLATLPNRPHRTTNDALSLIAHRRGLTRLSPSADDPLNVFPTHTPLTGSITGQTAAGQRRVAQPQLPTERPVCAHWPS
SIO_010081: NFX46_RS40305
subclass of: SO_0000673
so part of: NFX46_RS40305
location: 1553..2044
location: region:1553-2044:1
so has part: feature:1553-2044:1:exon

WP_252551194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1553-2044:1:exon

NFX46_RS40310
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40310
old locus tag: NFX46_40310
so part of: sequence
location: complement(1999..2616)
location: region:1999-2616:-1
so has part: feature:1999-2616:-1:exon
subclass of: SO_0000010

position:1999:-1
position: 1999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2616:-1
position: 2616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1999-2616:-1:exon

NFX46_RS40310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40310
old locus tag: NFX46_40310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGITDTSVAAVSAAFSGLAAFGAWKASRQANDTAASVAQIERDRWHNALTPQLRLKLEQSDGLLYVRFDGPAQLGRLSIRLTVRDDFDRSRVPSLAGGPTPDEIAQFIWGPYRFRPGVDGADQLGRTVVPFPLEAGDRTRLALAPSVKPTWYEGVDGEERWRGQYQNATIRLWADCEAEGHKSWRLSFGVTQDGQWAQTGRSVGS
SIO_010081: NFX46_RS40310
subclass of: SO_0000673
so part of: NFX46_RS40310
location: complement(1999..2616)
location: region:1999-2616:-1
so has part: feature:1999-2616:-1:exon

WP_252551193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1999-2616:-1:exon

NFX46_RS40315
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40315
old locus tag: NFX46_40315
pseudo: true
so part of: sequence
location: 2615..>3229
location: region:2615-3229:1
so has part: feature:2615-3229:1:exon
subclass of: SO_0000010

position:2615:1
position: 2615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3229:1
position: 3229
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2615-3229:1:exon

NFX46_RS40315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40315
old locus tag: NFX46_40315
inference: COORDINATES: protein motif:HMM:NF015422.2
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helicase associated domain-containing protein
SIO_010081: NFX46_RS40315
subclass of: SO_0000673
so part of: NFX46_RS40315
location: 2615..>3229
location: region:2615-3229:1
so has part: feature:2615-3229:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2615-3229:1:exon

NFX46_RS40320
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40320
old locus tag: NFX46_40320
so part of: sequence
location: 3524..3754
location: region:3524-3754:1
so has part: feature:3524-3754:1:exon
subclass of: SO_0000010

position:3524:1
position: 3524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3754:1
position: 3754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3524-3754:1:exon

NFX46_RS40320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40320
old locus tag: NFX46_40320
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGESLATQFLSADLETACPACGYLMWVRYSEIVAQTAVTCPCCYTQIWLVDETGSAQNAGDIVQQQIAQALKGIFR
SIO_010081: NFX46_RS40320
subclass of: SO_0000673
so part of: NFX46_RS40320
location: 3524..3754
location: region:3524-3754:1
so has part: feature:3524-3754:1:exon

WP_252556877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3524-3754:1:exon

NFX46_RS40325
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40325
old locus tag: NFX46_40325
so part of: sequence
location: 3751..4722
location: region:3751-4722:1
so has part: feature:3751-4722:1:exon
subclass of: SO_0000010

position:3751:1
position: 3751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4722:1
position: 4722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3751-4722:1:exon

NFX46_RS40325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40325
old locus tag: NFX46_40325
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYQQRLQVAVRERLRKLMTAPFSSAGHEVHLAVNWINSQPALKGLLEEASRAEPEADRERFRTGLTRSGRFVWPSRTESGRATLIWELMQDIATQEADNSEIGWQTAIGYSISGRPQDSWREFAEDILQPLFDFLSERVGAESSILHTLERYRTRIEWFDREELYTRFKANLATGEEVYNLDLQRFLFLEGDHITHAKPRSASGEADLIGDLDGRDPLVCDGKIFDGKGRGKGYLVKGVHQIVKYAHDYGQHTAYLVIYNITDKLLELPTDGTPGAWPPYTELAGVRVYFIHVRVLPPTASKAGKATRVTLTKENLTNPDAA
SIO_010081: NFX46_RS40325
subclass of: SO_0000673
so part of: NFX46_RS40325
location: 3751..4722
location: region:3751-4722:1
so has part: feature:3751-4722:1:exon

WP_252551192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3751-4722:1:exon

NFX46_RS40330
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40330
old locus tag: NFX46_40330
so part of: sequence
location: 4785..5108
location: region:4785-5108:1
so has part: feature:4785-5108:1:exon
subclass of: SO_0000010

position:4785:1
position: 4785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5108:1
position: 5108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4785-5108:1:exon

NFX46_RS40330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40330
old locus tag: NFX46_40330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSRDRIPYFRWQRHLPRLIQDRSAGLMMAAAAVIALSFSVIGGLAELSSPSSDPCQRARDIADDARPADGKVDSGPEREQAIEPAGDWLDAATECQQNGGDPGPGF
SIO_010081: NFX46_RS40330
subclass of: SO_0000673
so part of: NFX46_RS40330
location: 4785..5108
location: region:4785-5108:1
so has part: feature:4785-5108:1:exon

WP_252551191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4785-5108:1:exon

NFX46_RS40335
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40335
old locus tag: NFX46_40335
so part of: sequence
location: 5596..6717
location: region:5596-6717:1
so has part: feature:5596-6717:1:exon
subclass of: SO_0000010

position:5596:1
position: 5596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6717:1
position: 6717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5596-6717:1:exon

NFX46_RS40335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40335
old locus tag: NFX46_40335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007387235.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: three-Cys-motif partner protein TcmP
translation: MGVLWKLEPATAAKHRLYQRYLDAWWPILLQTSQSTGYSRPRVTLLDAFAGPGRYEDGEPGSPVFILDRLLGHHAVDRMHLSPRRVHLIFIEKDRARHEHLMAELASRFGPLKDLPVRVEVRRGEAGHDSLAVLDELGAWGHPILGIFDSWGSVNVPLQVMSRIARNRSSEVITTFGPNWFSRREELNADILDTVFGGRGFWTAAADELGPDEKWRVWLRTYRDALRRAGFGYQLQFELVPRTGQPLYLVFATGSTAGLKAMKDAMWKVDDLDGESFRDPRTRGATADGQLDLFQAAGLIDDELAELVAQRLSAGATTVEAIGEWLLAETARWMPKHALKAARQMRQDGVIAVQSPGKLTTKSRISLQAQVRA
SIO_010081: NFX46_RS40335
subclass of: SO_0000673
so part of: NFX46_RS40335
location: 5596..6717
location: region:5596-6717:1
so has part: feature:5596-6717:1:exon

WP_252551190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5596-6717:1:exon

NFX46_RS40340
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40340
old locus tag: NFX46_40340
so part of: sequence
location: complement(6689..7444)
location: region:6689-7444:-1
so has part: feature:6689-7444:-1:exon
subclass of: SO_0000010

position:6689:-1
position: 6689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7444:-1
position: 7444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6689-7444:-1:exon

NFX46_RS40340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40340
old locus tag: NFX46_40340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007387234.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage Gp37/Gp68 family protein
translation: MSDRSSIEWTEATWNPTTGCDRVSDGCDNCYALTLAKRLKAMGSAKYQNDGDPRTSGPGFGLTVHPDALRVPLGWKAPRTVFVNSMSDLFHARVPLDYVEQVFDVIAQTPQHTYQVLTKRARRLRQVADRLEWPANLWMGVSVESVKELPRVEDLRQVPAAVRFLSCEPLLGSLDGLDLTGIHWVIAGGESGPRFRPMEQEWVTGIRDACLQADVAFFFKQWGGRTPKASGRHLQGRTWDQMPMPEPVPAG
SIO_010081: NFX46_RS40340
subclass of: SO_0000673
so part of: NFX46_RS40340
location: complement(6689..7444)
location: region:6689-7444:-1
so has part: feature:6689-7444:-1:exon

WP_252551189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6689-7444:-1:exon

NFX46_RS40345
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40345
old locus tag: NFX46_40345
so part of: sequence
location: 8211..9044
location: region:8211-9044:1
so has part: feature:8211-9044:1:exon
subclass of: SO_0000010

position:8211:1
position: 8211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9044:1
position: 9044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8211-9044:1:exon

NFX46_RS40345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40345
old locus tag: NFX46_40345
inference: COORDINATES: protein motif:HMM:NF022633.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2971 domain-containing protein
translation: MGIEPHYPTLSAHHDDRSLDAGFSLWREIDRQLRLHTKVGCLTQDLALPAHVFNPDALRGWAHLSLWAHYGDGHAGVCLRFDQAKLVESFLKHAAPAAFAFHGPVRYLSSQDSPPTRDIDVGQVAEFGADAVALAYAEANKDVLFFRKHFDWDSEAEYRLVMVNQSTGFDYVDIRDALTGVILGSAFPQERVQELQEALRSYPNVTVENLQFLNRRLHSFPFQGSVLQARPRSSHIWPGARRKGPLAERLLALRQAETEVKHAARLPPSSSRSPWRG
SIO_010081: NFX46_RS40345
subclass of: SO_0000673
so part of: NFX46_RS40345
location: 8211..9044
location: region:8211-9044:1
so has part: feature:8211-9044:1:exon

WP_252551188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8211-9044:1:exon

NFX46_RS40350
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40350
old locus tag: NFX46_40350
so part of: sequence
location: complement(9637..9837)
location: region:9637-9837:-1
so has part: feature:9637-9837:-1:exon
subclass of: SO_0000010

position:9637:-1
position: 9637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9837:-1
position: 9837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9637-9837:-1:exon

NFX46_RS40350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40350
old locus tag: NFX46_40350
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLWSSLLVAAGGQRLRARVVAIADPEELFVEGAARNRAKALCTGLSVGTECLAHAGKDEFQQLPDL
SIO_010081: NFX46_RS40350
subclass of: SO_0000673
so part of: NFX46_RS40350
location: complement(9637..9837)
location: region:9637-9837:-1
so has part: feature:9637-9837:-1:exon

WP_289782151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9637-9837:-1:exon

NFX46_RS40355
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40355
old locus tag: NFX46_40355
so part of: sequence
location: 9836..10360
location: region:9836-10360:1
so has part: feature:9836-10360:1:exon
subclass of: SO_0000010

position:9836:1
position: 9836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10360:1
position: 10360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9836-10360:1:exon

NFX46_RS40355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40355
old locus tag: NFX46_40355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020138204.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRPNVFGDWQEYDEDFTGLRVRVHSFKKGDVPKRGRDDDAKGLMYFSFQVTVENRAEEYFDLCLHHHEVQIRAGKDGHSAYLDEYGSAWIRNFRLYPLRRASATIYAAAPVSHLKTIDIQIAMRVDREDTDPYVWVGSDGIPESTGRTAVSKTRGKGIADEVSKFLEQGGTDV
SIO_010081: NFX46_RS40355
subclass of: SO_0000673
so part of: NFX46_RS40355
location: 9836..10360
location: region:9836-10360:1
so has part: feature:9836-10360:1:exon

WP_252551187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9836-10360:1:exon

NFX46_RS40360
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40360
old locus tag: NFX46_40360
so part of: sequence
location: complement(10854..11225)
location: region:10854-11225:-1
so has part: feature:10854-11225:-1:exon
subclass of: SO_0000010

position:10854:-1
position: 10854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11225:-1
position: 11225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10854-11225:-1:exon

NFX46_RS40360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40360
old locus tag: NFX46_40360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQWVPEGERMTAGCAVTYGRTLWGLFPRRASLLLTDRRVRVLRHRGNDLQYAIRGVWFEMMRGEAVAVCRNPQVRVEFDKGQEIELRRHEGGVECLRISQWDEVHAEALYAAFPVQGSEPQT
SIO_010081: NFX46_RS40360
subclass of: SO_0000673
so part of: NFX46_RS40360
location: complement(10854..11225)
location: region:10854-11225:-1
so has part: feature:10854-11225:-1:exon

WP_252557037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10854-11225:-1:exon

NFX46_RS40365
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40365
old locus tag: NFX46_40365
so part of: sequence
location: complement(11907..12200)
location: region:11907-12200:-1
so has part: feature:11907-12200:-1:exon
subclass of: SO_0000010

position:11907:-1
position: 11907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12200:-1
position: 12200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11907-12200:-1:exon

NFX46_RS40365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40365
old locus tag: NFX46_40365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018565838.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASTTDRVMSLRAVRQLHRVRTFYAGGTLLWAVLTAWTAWQSPGSRQMWVSALLLAAFTTLLLTASLWLHRLQTAGPRRPAHHAASRSATAPRHAHA
SIO_010081: NFX46_RS40365
subclass of: SO_0000673
so part of: NFX46_RS40365
location: complement(11907..12200)
location: region:11907-12200:-1
so has part: feature:11907-12200:-1:exon

WP_252557038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11907-12200:-1:exon

NFX46_RS40370
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40370
old locus tag: NFX46_40370
so part of: sequence
location: complement(12272..12460)
location: region:12272-12460:-1
so has part: feature:12272-12460:-1:exon
subclass of: SO_0000010

position:12272:-1
position: 12272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12460:-1
position: 12460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12272-12460:-1:exon

NFX46_RS40370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40370
old locus tag: NFX46_40370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010988964.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHKTENGEGNRFCKACGTPAEDGKLCNHCNAVLDLPDTAGLVEDQGAAIRRDFEGRTQQQQ
SIO_010081: NFX46_RS40370
subclass of: SO_0000673
so part of: NFX46_RS40370
location: complement(12272..12460)
location: region:12272-12460:-1
so has part: feature:12272-12460:-1:exon

WP_252557039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12272-12460:-1:exon

NFX46_RS40375
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40375
old locus tag: NFX46_40375
so part of: sequence
location: 12774..15299
location: region:12774-15299:1
so has part: feature:12774-15299:1:exon
subclass of: SO_0000010

position:12774:1
position: 12774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15299:1
position: 15299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12774-15299:1:exon

NFX46_RS40375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40375
old locus tag: NFX46_40375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010049001.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase
translation: MAVKELRPHQREAVDAVLRALELPARSTVPERGLRTQVIMATGTGKTLVATRSAEELRAGRVLVLVPSLDLLAQTEAAWREGGRTGPMIGVSSLRGQEVSFPNTTDVDELVEWTRHLDKVTVFATYASLGLGTLERAHAAGLPGWSLIIVDEAHRCSGRIGKPWAVVHDNTRIPALRRLYMTATPRLWQLDEDSEQGAPGELVASMEDDPSSPFGSRAFTLTLSAAIDRGICAPYQVVCLDITDTQLQAAQLLGEDARSEQVRGARLAALQTALVKASAEEDFRRTLVFHHVVKEAEAFAAGLPHVAEQLHDADPELYPWMVWADWLCGDHKPLHRRQVLSEFADGIAADGTVVEKAFLSSVRILGEGVDTRNCDSVYFADVRGSMPDLVQAVGRALRMQPGEGKTASLVVPVLLGPGETTDSMLTSRAYGGLAKLLEALRAHDARIVEQLAEQQARSRVRGVQSRSGAEGEGAESDRSDRLSVPARELLKFSTPRDPAQLAAFINLRVLHPEHQHWRRGIEAAVIYHRLHGDLKVPFTYRVPTGEEAEAEDWPASLAAFPLGQWTADNRRFYARGNMDPDRIAQLEKLGMIWSHYDVAWEEGLAAARGWAEESGHLLAPLDATFQGARVGIFLKNARAAARRAQENEQRRAKGLPVGSSAGALSDERREQLEEIDASWCPSWPVTWQRCFHLVRMHLDAGEALPTMAGEVLRQGEDLGRWVQSVRLGWDKLTGVQQWMCEQVLGIEPATHDEKPKPRRTQADKWAMHYEAAQQYYKREGHLRVPRKHVERIAIDNGDNGKSGGGEREIKLGAWVGNQRSRAATLTPERMEKLSSIGMRWA
SIO_010081: NFX46_RS40375
subclass of: SO_0000673
so part of: NFX46_RS40375
location: 12774..15299
location: region:12774-15299:1
so has part: feature:12774-15299:1:exon

WP_252557040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12774-15299:1:exon

NFX46_RS40380
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40380
old locus tag: NFX46_40380
so part of: sequence
location: 15520..18654
location: region:15520-18654:1
so has part: feature:15520-18654:1:exon
subclass of: SO_0000010

position:15520:1
position: 15520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18654:1
position: 18654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15520-18654:1:exon

NFX46_RS40380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40380
old locus tag: NFX46_40380
inference: COORDINATES: protein motif:HMM:NF015422.2
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helicase associated domain-containing protein
translation: MEIKELLPAVADAGGLSNVMGRARPDSEVFLNQEARDRVAVLCRVAPHHLYKALPAWAQEEPRRRFATGPAAQFHHTPEMVLPWGPACPKCTVRRTGRVEGVCLYLQPWQRVCGSHHAWLMQVPGTAGCVVALPAGELWVQAQKRHRKLSRRGAAAVGAFEVAQAVTASWWQRMWPREQLWPARLRALWESRVEWETWQVVAREAVTYPETVALAALLADGAFRRRVVAEARGGVPFRLADLPSLPEAVARCLRRPWLVEELAAQTSGPLFTWAYQWVRAHRGGQAAEREIWAVASAHRPRPVADELAEAARPAGRSAGAKRRRGHSRQADKAFATGLSYARRYLNEHGSLAVQKDTVVDSFRLGEWLHNVKSRAWALSQERVQALEALDVWWNVPWPTQWQRSYYRARDHAAVHGPPDAAAGFPGTHILNGEWLYLQCSHYDSLHREQQRLLADIGITAEVARTARPRRASMQARFEAALEHARAYAAEHGHLAVSGKSVRYQGYSLGAWLTSQRNRTRRAPSATKRSRALDAIDPWWNPPWPLAWQRAYAHVRRLVESGQQLDASAGFPGVAAELARWLSQQLAVPENFHPDQRRLLAEIGVLAESEKAPAARGDDPAGTTPDAGLTSARCFAGEHGHLAVASDYVHNGYPLGRWLASQRMQDSRHARSSRGPWPRGQLLTALDPWWNPPWHFSWQRRYRQAHALWRAGRLPLPGTPTIHLQQGEDRVDEADEVAAWLRRQCARHDVLQLEQQNLLADIGITAATAHMVAASGRRTPVDHGLEHARRYAGEHGSLAITVESIHHGFPLGSWLMRQRHRAAQGRIEAERLAALNALDPHWNPPWLLTWQRAYHRARTATASDTISQTDRRWITTQTRLWDSLHPLQQQLLAELGAAPATLPTAITTARRYPPSKGLPHARSYAAEHGHLAVSTPTKHAGFPLGSWLLQQRRKARSGRLSAPTLQELIVLDPWWNPPWPFTWQRTYQQYRTTLATGEPLTPELQRWTRKQTSFWPQLHPHQQALLDSMGVVGRSGISPENRPFE
SIO_010081: NFX46_RS40380
subclass of: SO_0000673
so part of: NFX46_RS40380
location: 15520..18654
location: region:15520-18654:1
so has part: feature:15520-18654:1:exon

WP_252557041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15520-18654:1:exon

NFX46_RS40385
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40385
old locus tag: NFX46_40385
so part of: sequence
location: 18780..19541
location: region:18780-19541:1
so has part: feature:18780-19541:1:exon
subclass of: SO_0000010

position:18780:1
position: 18780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19541:1
position: 19541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18780-19541:1:exon

NFX46_RS40385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40385
old locus tag: NFX46_40385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006375039.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TnsA-like heteromeric transposase endonuclease subunit
translation: MAFTGLSGQVTQLPWEQAVGAVRFEELAPVSAFPVLPGRRWGPGWWWSATTGRHVVHGSATMRTQLMALDRDPEVTGLSARPVRLIWRDPADGRVRGWVPQLFARYADGSGLLADCPSSPAAGGDRAQRARVVLEAVCARVGWSYRCLEPPPAVVAANLRWLAGYRHPRYAGPPGVRAAISAAFAVARQLADGAASAGEPLQVLPAVYHALWAGQLVARLDEPLGEHTMVSAHQSNSGQTGTVMADARRRDEE
SIO_010081: NFX46_RS40385
subclass of: SO_0000673
so part of: NFX46_RS40385
location: 18780..19541
location: region:18780-19541:1
so has part: feature:18780-19541:1:exon

WP_252557042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18780-19541:1:exon

NFX46_RS40390
type: Gene
subclass of: SO_0000704
RO_0002162: 114686
locus tag: NFX46_RS40390
old locus tag: NFX46_40390
pseudo: true
so part of: sequence
location: 19577..>21680
location: region:19577-21680:1
so has part: feature:19577-21680:1:exon
subclass of: SO_0000010

position:19577:1
position: 19577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19577-21680:1:exon

NFX46_RS40390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 114686
locus tag: NFX46_RS40390
old locus tag: NFX46_40390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011026768.1
note: frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: NFX46_RS40390
subclass of: SO_0000673
so part of: NFX46_RS40390
location: 19577..>21680
location: region:19577-21680:1
so has part: feature:19577-21680:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19577-21680:1:exon