Streptomyces phaeoluteigriseus strain Qhu-M197 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces aurantiacus group.
Complete genome sequence of soil microorganisms Streptomyces sp. Qhu-M197 isolated from Alpine meadows habitats on the Tibetan Plateau
Submitted (15-JUN-2022) Faculty of Eco-Environmental Engineering, qinghaiuniversity, No. 251 Ningda Road, Chengbei District, Xining City, Qinghai Province 810000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP099469.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Hifiasm v. v0.14; Circlator v. v1.5.5;\n Pilon v. v1.22\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 68.51291x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/05/2023 05:05:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,094\nCDSs (total) :: 8,000\nGenes (coding) :: 7,682\nCDSs (with protein) :: 7,682\nGenes (RNA) :: 94\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 3\nPseudo Genes (total) :: 318\nCDSs (without protein) :: 318\nPseudo Genes (ambiguous residues) :: 0 of 318\nPseudo Genes (frameshifted) :: 146 of 318\nPseudo Genes (incomplete) :: 257 of 318\nPseudo Genes (internal stop) :: 34 of 318\nPseudo Genes (multiple problems) :: 101 of 318\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018722292.1
COORDINATES: similar to AA sequence:RefSeq:WP_009741112.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329430.1
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010361177.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF015736.2
DnaB helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
COORDINATES: protein motif:HMM:NF026288.2
COORDINATES: similar to AA sequence:RefSeq:WP_018844736.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014386301.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF019149.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018654324.1
COORDINATES: similar to AA sequence:RefSeq:WP_020126393.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558197.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019334.2
COORDINATES: similar to AA sequence:RefSeq:WP_004993648.1
COORDINATES: similar to AA sequence:RefSeq:WP_007446959.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828200.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019524914.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007492721.1
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_018523883.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523884.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: similar to AA sequence:RefSeq:WP_007379143.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677236.1
COORDINATES: similar to AA sequence:RefSeq:WP_010982317.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024767.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003987647.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677524.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677523.1
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: similar to AA sequence:RefSeq:WP_014677509.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523011.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039404.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109709.1
GO:0008270 - zinc ion binding [Evidence IEA]
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009062353.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158441.1
COORDINATES: similar to AA sequence:RefSeq:WP_014137911.1
COORDINATES: similar to AA sequence:RefSeq:WP_018353584.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677475.1
COORDINATES: similar to AA sequence:RefSeq:WP_010988922.1
COORDINATES: similar to AA sequence:RefSeq:WP_010064744.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645464.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329437.1