Rickettsia helvetica C9P9 plasmid pRhe, whole genome shotgun sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.
Genomic comparison of Rickettsia helvetica and other Rickettsia species
Genomic comparison of Rickettsia helvetica
Submitted (08-FEB-2012) Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), 27 Boulevard Jean Moulin, Marseille, France
REFSEQ INFORMATION: The reference sequence is identical to\nCM001468.1.\nRickettsia helvetica C9P9 is available from the Collection de\nSouches de l'Unite des Rickettsies\n(http://ifr48.timone.univ-mrs.fr/portail2/) under the reference\nCSUR R122.\nThe sequence of plasmid pRhe in AICO01000002 was corrected in March\n2012 to add 60bp missing from its start.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: NOV-2011\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 40x\nSequencing Technology :: 454 GS-FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:00:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,632\nCDSs (total) :: 1,592\nGenes (coding) :: 1,420\nCDSs (with protein) :: 1,420\nGenes (RNA) :: 40\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 33\nncRNAs :: 4\nPseudo Genes (total) :: 172\nCDSs (without protein) :: 172\nPseudo Genes (ambiguous residues) :: 0 of 172\nPseudo Genes (frameshifted) :: 116 of 172\nPseudo Genes (incomplete) :: 64 of 172\nPseudo Genes (internal stop) :: 57 of 172\nPseudo Genes (multiple problems) :: 56 of 172\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008581481.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
DnaA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014177.2
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014386929.1
COORDINATES: similar to AA sequence:RefSeq:WP_013747295.1
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR02612.1
COORDINATES: similar to AA sequence:RefSeq:WP_010303419.1
COORDINATES: protein motif:HMM:NF021897.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008581590.1
COORDINATES: protein motif:HMM:NF016300.2
COORDINATES: protein motif:HMM:NF021390.2
COORDINATES: similar to AA sequence:RefSeq:WP_008581385.1
COORDINATES: similar to AA sequence:RefSeq:WP_008581387.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: protein motif:HMM:NF039741.1
COORDINATES: similar to AA sequence:RefSeq:WP_011271735.1
COORDINATES: similar to AA sequence:RefSeq:WP_011271734.1
COORDINATES: similar to AA sequence:RefSeq:WP_011476848.1
COORDINATES: protein motif:HMM:NF015069.2
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_013747303.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_013006754.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: protein motif:HMM:NF024928.2
COORDINATES: similar to AA sequence:RefSeq:WP_013006733.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386951.1
COORDINATES: similar to AA sequence:RefSeq:WP_013006735.1
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008581495.1
COORDINATES: similar to AA sequence:RefSeq:WP_006280065.1
COORDINATES: similar to AA sequence:RefSeq:WP_008581493.1
COORDINATES: similar to AA sequence:RefSeq:WP_015587811.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008581491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008581490.1
COORDINATES: similar to AA sequence:RefSeq:WP_019236558.1
COORDINATES: protein motif:HMM:NF015737.2
autotransporter domain-containing protein
COORDINATES: protein motif:HMM:NF033587.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023069.2
COORDINATES: similar to AA sequence:RefSeq:WP_012720126.1
COORDINATES: similar to AA sequence:RefSeq:WP_010424174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014407988.1
COORDINATES: similar to AA sequence:RefSeq:WP_010424178.1
COORDINATES: similar to AA sequence:RefSeq:WP_010424181.1