Phycisphaera mikurensis NBRC 102666 plasmid pPSMK1, complete sequence.
Bacteria; Planctomycetota; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.
Complete genome sequence of Phycisphaera mikurensis NBRC 102666
Submitted (29-FEB-2012) Contact:Director-General Department of Biotechnology National Institute of Technology and Evaluation, NITE Biological Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan URL :http://www.bio.nite.go.jp/
REFSEQ INFORMATION: The reference sequence is identical to\nAP012339.1.\n\n\nPlease visit our web site. URL:http://www.bio.nite.go.jp/\n\nDOGAN ; Database of Genomes Analyzed at NITE. The database contains\ngenome sequence data, physical maps and the genomic and proteomic\ndata of the microorganisms analyzed.\nURL:http://www.bio.nite.go.jp/dogan/Top\n\nThe microbial strain and microbial genomic DNA clones used for the\nsequencing project are available through the NBRC.\nURL:http://www.nbrc.nite.go.jp/e/index.html.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: phrap v. 0.020425.c\nGenome Coverage :: 8.7X\nSequencing Technology :: Sanger ABI 3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/25/2022 09:27:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,162\nCDSs (total) :: 3,110\nGenes (coding) :: 3,093\nCDSs (with protein) :: 3,093\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 0 of 17\nPseudo Genes (incomplete) :: 17 of 17\nPseudo Genes (internal stop) :: 0 of 17\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
strain coidentity: FYK2301M01; synonym: Phycisphaera mikurensis FYK2301M01
COORDINATES: protein motif:HMM:NF020419.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF022898.2
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021759.2
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006248347.1
COORDINATES: protein motif:HMM:NF013069.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF017119.2
COORDINATES: similar to AA sequence:RefSeq:WP_010412790.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_014437633.1
COORDINATES: protein motif:HMM:NF027890.2
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014437631.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014437630.1
COORDINATES: similar to AA sequence:RefSeq:WP_014437629.1
COORDINATES: similar to AA sequence:RefSeq:WP_014435487.1
COORDINATES: protein motif:HMM:NF012575.2
COORDINATES: protein motif:HMM:NF021505.2
COORDINATES: similar to AA sequence:RefSeq:WP_006938491.1
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: similar to AA sequence:RefSeq:WP_014437625.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014437624.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014437623.1
COORDINATES: similar to AA sequence:RefSeq:WP_014437622.1
COORDINATES: similar to AA sequence:RefSeq:WP_014437621.1
COORDINATES: similar to AA sequence:RefSeq:WP_007002470.1
COORDINATES: protein motif:HMM:NF014385.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_008657179.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008657180.1
COORDINATES: protein motif:HMM:NF021497.2
COORDINATES: similar to AA sequence:RefSeq:WP_020304266.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF021549.2
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012275051.1
COORDINATES: protein motif:HMM:TIGR02782.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF023271.2
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: protein motif:HMM:NF013793.2