Phycisphaera mikurensis NBRC 102666, complete sequence.
Bacteria; Planctomycetota; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.
Complete genome sequence of Phycisphaera mikurensis NBRC 102666
Submitted (29-FEB-2012) Contact:Director-General Department of Biotechnology National Institute of Technology and Evaluation, NITE Biological Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan URL :http://www.bio.nite.go.jp/
REFSEQ INFORMATION: The reference sequence is identical to\nAP012338.1.\n\n\nPlease visit our web site. URL:http://www.bio.nite.go.jp/\n\nDOGAN ; Database of Genomes Analyzed at NITE. The database contains\ngenome sequence data, physical maps and the genomic and proteomic\ndata of the microorganisms analyzed.\nURL:http://www.bio.nite.go.jp/dogan/Top\n\nThe microbial strain and microbial genomic DNA clones used for the\nsequencing project are available through the NBRC.\nURL:http://www.nbrc.nite.go.jp/e/index.html.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: phrap v. 0.020425.c\nGenome Coverage :: 8.7X\nSequencing Technology :: Sanger ABI 3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/25/2022 09:27:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,162\nCDSs (total) :: 3,110\nGenes (coding) :: 3,093\nCDSs (with protein) :: 3,093\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 0 of 17\nPseudo Genes (incomplete) :: 17 of 17\nPseudo Genes (internal stop) :: 0 of 17\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
strain coidentity: FYK2301M01; synonym: Phycisphaera mikurensis FYK2301M01
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:NF014717.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012235.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024914.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF012335.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF013530.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF027681.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:TIGR01475.1
GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00421.1
COORDINATES: protein motif:HMM:TIGR02595.1
PEP-CTERM sorting domain-containing protein
COORDINATES: protein motif:HMM:TIGR01353.1
GO:0008832 - dGTPase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF024770.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019231.2
COORDINATES: protein motif:HMM:NF012209.1
COORDINATES: protein motif:HMM:NF006667.0
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: protein motif:HMM:NF012880.2
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF013766.2
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: protein motif:HMM:NF013760.2
MotA/TolQ/ExbB proton channel family protein
COORDINATES: protein motif:HMM:NF025141.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:NF013216.2
transcription antitermination factor NusB
COORDINATES: protein motif:HMM:NF012305.2
COORDINATES: protein motif:HMM:TIGR00506.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_003113429.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: protein motif:HMM:NF025946.2
COORDINATES: protein motif:HMM:NF013117.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00220.1
GO:0008381 - mechanosensitive ion channel activity [Evidence IEA]
large conductance mechanosensitive channel protein MscL
COORDINATES: protein motif:HMM:NF025697.2
COORDINATES: protein motif:HMM:NF021134.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF012888.2
sulfotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF015049.2
COORDINATES: protein motif:HMM:NF012360.2
putative colanic acid biosynthesis acetyltransferase
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF027267.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0097351 - toxin sequestering activity [Evidence IEA]
GO:0001558 - regulation of cell growth [Evidence IEA]
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: protein motif:HMM:TIGR01552.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:NF025157.2
Fic/DOC family N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013226.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003013.0
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025086.2
COORDINATES: protein motif:HMM:NF019499.2
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005772098.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF001138.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF019309.2
COORDINATES: protein motif:HMM:NF006799.0
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039902.1
COORDINATES: protein motif:HMM:TIGR00055.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002223.0
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00357.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: protein motif:HMM:NF014575.2
GO:0005575 - cellular_component [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_014438596.1
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015862.2
COORDINATES: protein motif:HMM:NF033668.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF021221.2
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF017174.2
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004044.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014435627.1
COORDINATES: protein motif:HMM:TIGR04256.1
COORDINATES: protein motif:HMM:NF014607.2
DNA repair protein RecO C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: protein motif:HMM:NF006969.0
COORDINATES: protein motif:HMM:NF018508.2
COORDINATES: protein motif:HMM:NF024176.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: protein motif:HMM:NF013509.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012422.2
PAS and helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013081.2
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017964.2
COORDINATES: protein motif:HMM:NF012797.2
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: similar to AA sequence:RefSeq:WP_001262436.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: protein motif:HMM:TIGR00078.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: protein motif:HMM:NF018884.2
PP2C family protein-serine/threonine phosphatase
COORDINATES: protein motif:HMM:TIGR03026.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: protein motif:HMM:TIGR00056.1
COORDINATES: protein motif:HMM:NF013934.2
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04138.1
COORDINATES: protein motif:HMM:TIGR00036.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: protein motif:HMM:NF012874.2
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004155916.1
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014660.2
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02492.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF016985.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014206.2
flagellar basal body P-ring protein FlgI
COORDINATES: protein motif:HMM:NF016274.2
COORDINATES: protein motif:HMM:NF012993.2
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF000868.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_012853617.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF014714.2
COORDINATES: protein motif:HMM:NF037100.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF020360.2
nucleotidyltransferase substrate binding protein
COORDINATES: protein motif:HMM:NF004231.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: protein motif:HMM:TIGR04406.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014435565.1
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm.; PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF013188.2
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01131.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:TIGR01144.1
COORDINATES: protein motif:HMM:TIGR01145.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292873.1
COORDINATES: protein motif:HMM:NF023401.2
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013856.2
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF017504.2
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF013440.2
COORDINATES: protein motif:HMM:NF019225.2
COORDINATES: protein motif:HMM:NF019575.2
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF013342.2
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF015019.2
sodium/proton-translocating pyrophosphatase
COORDINATES: protein motif:HMM:NF022317.2
COORDINATES: similar to AA sequence:RefSeq:WP_002508756.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: protein motif:HMM:NF014027.2
GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA]
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: protein motif:HMM:NF021255.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016301.2
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012670.2
transketolase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF021497.2
COORDINATES: protein motif:HMM:NF016270.2
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF015639.2
COORDINATES: protein motif:HMM:NF017434.2
COORDINATES: protein motif:HMM:TIGR00768.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006421.0
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: similar to AA sequence:RefSeq:WP_014435503.1
COORDINATES: protein motif:HMM:NF022281.2
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF013382.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436055.1
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: protein motif:HMM:NF037292.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_014435649.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014435646.1
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012695.2
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01221.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: protein motif:HMM:NF017885.2
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013331.2
COORDINATES: protein motif:HMM:TIGR00090.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013236.2
FliM/FliN family flagellar motor switch protein
COORDINATES: protein motif:HMM:NF012640.2
COORDINATES: protein motif:HMM:NF021230.2
COORDINATES: protein motif:HMM:NF013506.2
COORDINATES: protein motif:HMM:NF025793.2
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02274.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02504.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: protein motif:HMM:TIGR02284.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021424.2
COORDINATES: protein motif:HMM:NF014646.2
COORDINATES: protein motif:HMM:NF013594.2
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
ubiquinone/menaquinone biosynthesis methyltransferase
COORDINATES: protein motif:HMM:NF019311.2
COORDINATES: protein motif:HMM:NF005589.0
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: protein motif:HMM:NF012337.2
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014438496.1
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013213.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00046.1
COORDINATES: protein motif:HMM:TIGR01981.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012726854.1
COORDINATES: protein motif:HMM:NF008773.0
COORDINATES: protein motif:HMM:TIGR00049.1
iron-sulfur cluster assembly accessory protein
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: protein motif:HMM:NF016223.2
flagellar biosynthesis anti-sigma factor FlgM
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF020279.2
cytochrome c oxidase assembly factor Coa1 family protein
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF006914.0
GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
2-oxoglutarate dehydrogenase E1 component
COORDINATES: similar to AA sequence:RefSeq:WP_014436626.1
COORDINATES: protein motif:HMM:NF021474.2
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: protein motif:HMM:NF017071.2
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024299.2
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:NF022517.2
COORDINATES: protein motif:HMM:NF021526.2
COORDINATES: protein motif:HMM:TIGR02734.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03568.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0006047 - UDP-N-acetylglucosamine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014409.2
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:NF024584.2
COORDINATES: protein motif:HMM:NF014075.2
COORDINATES: protein motif:HMM:NF039709.1
COORDINATES: protein motif:HMM:TIGR00544.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:TIGR00212.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012593.2
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_014435754.1
COORDINATES: protein motif:HMM:NF011291.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: protein motif:HMM:NF013215.2
COORDINATES: protein motif:HMM:TIGR03814.1
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF013771.2
COORDINATES: protein motif:HMM:NF003526.0
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF019344.2
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:NF020252.2
COORDINATES: protein motif:HMM:TIGR01296.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291634.1
COORDINATES: protein motif:HMM:NF022479.2
COORDINATES: protein motif:HMM:NF024662.2
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF025017.2
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_003807114.1
COORDINATES: protein motif:HMM:NF013755.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014658.2
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF016228.2
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020801803.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001168032.1
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF008687.0
GO:0019180 - dTDP-4-amino-4,6-dideoxygalactose transaminase activity [Evidence IEA]
GO:0009246 - enterobacterial common antigen biosynthetic process [Evidence IEA]
dTDP-4-amino-4,6-dideoxygalactose transaminase
COORDINATES: protein motif:HMM:NF012760.2
GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01207.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: protein motif:HMM:NF003952.0
GO:0008690 - 3-deoxy-manno-octulosonate cytidylyltransferase activity [Evidence IEA]
3-deoxy-manno-octulosonate cytidylyltransferase
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: protein motif:HMM:NF017197.2
COORDINATES: protein motif:HMM:NF013071.2
COORDINATES: protein motif:HMM:TIGR00730.1
COORDINATES: protein motif:HMM:TIGR03753.1
Brp/Blh family beta-carotene 15,15'-dioxygenase
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:NF014655.2
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:TIGR01063.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019469841.1
COORDINATES: protein motif:HMM:TIGR03916.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:TIGR00696.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: protein motif:HMM:NF021254.2
archaeosortase/exosortase family protein
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:NF027219.2
COORDINATES: protein motif:HMM:NF009475.0
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:NF016430.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014850.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF012387.2
GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]
COORDINATES: protein motif:HMM:NF013661.2
peptidoglycan recognition family protein
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF016051.2
putative phosphopantothenoylcysteine synthetase
COORDINATES: protein motif:HMM:NF018894.2
COORDINATES: protein motif:HMM:TIGR03915.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:TIGR04508.1
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014435954.1
COORDINATES: protein motif:HMM:TIGR00255.1
COORDINATES: protein motif:HMM:TIGR00810.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF012349.2
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014438548.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016265.2
GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF024808.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:TIGR00536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014437560.1
COORDINATES: protein motif:HMM:NF004684.0
COORDINATES: protein motif:HMM:NF001126.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: protein motif:HMM:NF012428.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF013640.2
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024273.2
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: protein motif:HMM:NF013672.2
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF025034.2
COORDINATES: protein motif:HMM:NF013025.2
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF014611.2
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012529.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF022716.2
COORDINATES: similar to AA sequence:RefSeq:WP_014435955.1
COORDINATES: protein motif:HMM:NF001540.0
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: protein motif:HMM:NF004344.0
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase carboxyltransferase subunit alpha
COORDINATES: protein motif:HMM:NF014234.2
GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
prephenate dehydrogenase/arogenate dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014438408.1
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR02397.1
COORDINATES: protein motif:HMM:NF003657.0
GO:0008780 - acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
COORDINATES: protein motif:HMM:TIGR00325.1
GO:0008759 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
UDP-3-O-acyl-N-acetylglucosamine deacetylase
COORDINATES: protein motif:HMM:TIGR00653.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1
COORDINATES: protein motif:HMM:NF000818.0
GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity [Evidence IEA]
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: protein motif:HMM:TIGR01327.1
GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF019238.2
COORDINATES: protein motif:HMM:NF027224.2
COORDINATES: protein motif:HMM:NF013362.2
COORDINATES: protein motif:HMM:NF014618.2
COORDINATES: protein motif:HMM:NF015692.2
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF014630.2
C4-type zinc ribbon domain-containing protein
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF013961.2
COORDINATES: protein motif:HMM:NF016086.2
COORDINATES: protein motif:HMM:NF025761.2
circularly permuted type 2 ATP-grasp protein
COORDINATES: protein motif:HMM:NF018528.2
COORDINATES: protein motif:HMM:NF019368.2
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: protein motif:HMM:NF013408.2
COORDINATES: protein motif:HMM:NF012339.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF009544.0
COORDINATES: protein motif:HMM:NF021567.2
COORDINATES: protein motif:HMM:NF012532.2
COORDINATES: protein motif:HMM:TIGR02532.1
COORDINATES: protein motif:HMM:NF038117.1
COORDINATES: protein motif:HMM:NF019239.2
COORDINATES: protein motif:HMM:NF018420.2
COORDINATES: protein motif:HMM:NF006778.0
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025082.2
COORDINATES: protein motif:HMM:NF018038.2
COORDINATES: protein motif:HMM:NF021516.2
COORDINATES: protein motif:HMM:NF018439.2
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: protein motif:HMM:NF037832.2
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF009314.0
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: protein motif:HMM:NF015993.2
GO:0015075 - ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: protein motif:HMM:NF014012.2
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: protein motif:HMM:NF012636.2
COORDINATES: protein motif:HMM:NF015970.2
COORDINATES: protein motif:HMM:NF017765.2
sodium-dependent bicarbonate transport family permease
COORDINATES: similar to AA sequence:RefSeq:WP_014436200.1
COORDINATES: protein motif:HMM:NF014641.2
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: protein motif:HMM:NF019076.2
COORDINATES: protein motif:HMM:NF019589.2
COORDINATES: protein motif:HMM:NF014502.2
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF033504.1
GO:0050043 - lactate racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028498.2
glycoside hydrolase family 30 beta sandwich domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002280569.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03640.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-C CRISPR-associated endonuclease Cas1c
COORDINATES: protein motif:HMM:TIGR00372.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02589.1
GO:0003674 - molecular_function [Evidence IEA]
type I-C CRISPR-associated protein Cas7/Csd2
COORDINATES: protein motif:HMM:TIGR01863.1
type I-C CRISPR-associated protein Cas8c/Csd1
COORDINATES: protein motif:HMM:NF021240.2
type I-C CRISPR-associated protein Cas5c
COORDINATES: protein motif:HMM:TIGR01587.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: protein motif:HMM:TIGR00002.1
COORDINATES: protein motif:HMM:NF016972.2
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
alpha/beta hydrolase fold domain-containing protein
COORDINATES: protein motif:HMM:NF040463.1
all3515 family Zur-repressed PEP-CTERM protein
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:NF002060.0
GO:0016410 - N-acyltransferase activity [Evidence IEA]
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
COORDINATES: protein motif:HMM:NF015871.2
COORDINATES: protein motif:HMM:TIGR03303.1
GO:0009279 - cell outer membrane [Evidence IEA]
outer membrane protein assembly factor BamA
COORDINATES: protein motif:HMM:NF012897.2
3-isopropylmalate dehydratase small subunit
COORDINATES: protein motif:HMM:NF013714.2
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024488.2
COORDINATES: protein motif:HMM:TIGR04294.1
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF012904.2
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: protein motif:HMM:NF015559.2
COORDINATES: protein motif:HMM:NF017496.2
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF003717.0
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017631298.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025873.2
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:NF005492.0
GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
phosphoribosylaminoimidazolecarboxamide formyltransferase
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: protein motif:HMM:TIGR00033.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019911.2
COORDINATES: protein motif:HMM:NF023249.2
COORDINATES: protein motif:HMM:NF015851.2
NrfD/PsrC family molybdoenzyme membrane anchor subunit
COORDINATES: protein motif:HMM:NF024247.2
TAT-variant-translocated molybdopterin oxidoreductase
COORDINATES: protein motif:HMM:NF014593.2
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: protein motif:HMM:NF015971.2
COORDINATES: protein motif:HMM:NF039905.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021514.2
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: protein motif:HMM:NF014788.2
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036499.2
COORDINATES: protein motif:HMM:NF027890.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:NF014605.2
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013097.2
COORDINATES: protein motif:HMM:NF022620.2
COORDINATES: protein motif:HMM:TIGR00836.1
GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]
GO:0072488 - ammonium transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003414756.1
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF012509.2
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: protein motif:HMM:NF013279.2
GO:0051301 - cell division [Evidence IEA]
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: protein motif:HMM:NF016027.2
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
COORDINATES: protein motif:HMM:NF015476.2
COORDINATES: protein motif:HMM:NF016169.2
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:TIGR01447.1
GO:0009338 - exodeoxyribonuclease V complex [Evidence IEA]
GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014074.2
COORDINATES: protein motif:HMM:TIGR00422.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016158.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014838.2
COORDINATES: protein motif:HMM:NF013100.2
GO:0008658 - penicillin binding [Evidence IEA]
penicillin-binding transpeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF014522.2
COORDINATES: protein motif:HMM:NF017758.2
COORDINATES: protein motif:HMM:TIGR03594.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003406299.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF015607.2
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014436202.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014436204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014436198.1
COORDINATES: protein motif:HMM:NF004126.0
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: protein motif:HMM:NF019491.2
COORDINATES: protein motif:HMM:NF014638.2
COORDINATES: similar to AA sequence:RefSeq:WP_000031771.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001265708.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00964.1
COORDINATES: protein motif:HMM:TIGR00922.1
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:NF040964.1
GO:0005856 - cytoskeleton [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006579.0
COORDINATES: protein motif:HMM:NF014164.2
COORDINATES: protein motif:HMM:NF001808.0
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005017067.1
COORDINATES: protein motif:HMM:TIGR01169.1
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016293567.1
COORDINATES: protein motif:HMM:TIGR00009.1
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02393.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014300.2
GO:0004127 - cytidylate kinase activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF009386.0
COORDINATES: protein motif:HMM:NF020804.2
small ribosomal subunit Rsm22 family protein
COORDINATES: protein motif:HMM:NF013259.2
putative NADPH--sulfite reductase hemoprotein beta-component
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: protein motif:HMM:NF013799.2
COORDINATES: protein motif:HMM:NF039707.1
COORDINATES: similar to AA sequence:RefSeq:WP_014436254.1
COORDINATES: similar to AA sequence:RefSeq:WP_014436252.1
COORDINATES: protein motif:HMM:NF018190.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436274.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019011.2
COORDINATES: protein motif:HMM:NF039643.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436307.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: protein motif:HMM:NF024686.2
chitobiase/beta-hexosaminidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014436257.1
COORDINATES: protein motif:HMM:NF013377.2
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF027964.2
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: protein motif:HMM:NF027792.2
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436657.1
GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO:0004565 - beta-galactosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436268.1
COORDINATES: protein motif:HMM:NF019375.2
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF024126.2
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: similar to AA sequence:RefSeq:WP_011353752.1
fumarylacetoacetate hydrolase family protein
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF012475.2
COORDINATES: protein motif:HMM:NF012551.2
COORDINATES: protein motif:HMM:NF019552.2
COORDINATES: protein motif:HMM:NF012742.2
COORDINATES: protein motif:HMM:NF020917.2
GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
CDGSH iron-sulfur domain-containing protein
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015377.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
cysteine peptidase family C39 domain-containing protein
COORDINATES: protein motif:HMM:TIGR01828.1
GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: protein motif:HMM:NF014156.2
COORDINATES: protein motif:HMM:NF036578.2
family 78 glycoside hydrolase catalytic domain
COORDINATES: similar to AA sequence:RefSeq:WP_014437391.1
COORDINATES: protein motif:HMM:NF027900.2
DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF028178.2
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF017946.2
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: protein motif:HMM:NF019365.2
COORDINATES: protein motif:HMM:NF012647.2
COORDINATES: protein motif:HMM:NF012861.2
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF021604.2
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:TIGR00149.1
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:TIGR00276.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02395.1
COORDINATES: protein motif:HMM:NF001399.0
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025033.2
COORDINATES: protein motif:HMM:NF016668.2
COORDINATES: protein motif:HMM:NF012961.2
COORDINATES: protein motif:HMM:NF006829.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF015451.2
aminoacetone oxidase family FAD-binding enzyme
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025030.2
RsmB/NOP family class I SAM-dependent RNA methyltransferase
COORDINATES: protein motif:HMM:NF025198.2
COORDINATES: protein motif:HMM:NF023374.2
COORDINATES: protein motif:HMM:TIGR03319.1
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024204.2
COORDINATES: similar to AA sequence:RefSeq:WP_004627468.1
COORDINATES: protein motif:HMM:NF013012.2
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01179.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00515.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_002515614.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF021486.2
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: protein motif:HMM:NF025015.2
COORDINATES: protein motif:HMM:TIGR04121.1
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
ligase-associated DNA damage response DEXH box helicase
COORDINATES: protein motif:HMM:TIGR04120.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04122.1
ligase-associated DNA damage response exonuclease
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: protein motif:HMM:TIGR00010.1
exosortase/archaeosortase family protein
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_014438415.1
COORDINATES: protein motif:HMM:NF014652.2
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013380.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00414.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01499.1
folylpolyglutamate synthase/dihydrofolate synthase family protein
COORDINATES: protein motif:HMM:TIGR02033.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016146.2
COORDINATES: protein motif:HMM:TIGR00396.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025464.2
COORDINATES: protein motif:HMM:NF009455.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
carbamoyl-phosphate synthase large subunit
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004679.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: protein motif:HMM:NF014494.2
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:TIGR01525.1
COORDINATES: protein motif:HMM:TIGR01470.1
COORDINATES: protein motif:HMM:TIGR01035.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00244.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024674.2
COORDINATES: protein motif:HMM:NF019042.2
COORDINATES: protein motif:HMM:NF012624.2
COORDINATES: protein motif:HMM:NF037043.2
COORDINATES: protein motif:HMM:NF014680.2
COORDINATES: protein motif:HMM:NF013256.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: protein motif:HMM:NF003585.0
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0003957 - NAD(P)+ transhydrogenase (B-specific) activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:NF005495.0
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF012906.2
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:TIGR00813.1
COORDINATES: similar to AA sequence:RefSeq:WP_004398583.1
COORDINATES: similar to AA sequence:RefSeq:WP_016291820.1
COORDINATES: protein motif:HMM:NF024585.2
COORDINATES: protein motif:HMM:TIGR01752.1
GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04123.1
ligase-associated DNA damage response endonuclease PdeM
COORDINATES: protein motif:HMM:TIGR00423.1
COORDINATES: protein motif:HMM:NF003998.0
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF018242.2
COORDINATES: protein motif:HMM:TIGR03139.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: similar to AA sequence:RefSeq:WP_009382703.1
COORDINATES: protein motif:HMM:NF008955.0
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00671.1
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: similar to AA sequence:RefSeq:WP_003230026.1
flotillin-like protein involved in membrane lipid rafts; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024605.2
isochorismatase family cysteine hydrolase
COORDINATES: protein motif:HMM:NF014119.2
COORDINATES: protein motif:HMM:TIGR00557.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: protein motif:HMM:NF022782.2
COORDINATES: protein motif:HMM:NF013814.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF021371.2
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:TIGR00344.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF008865.0
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014438617.1
COORDINATES: protein motif:HMM:NF014586.2
GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014072.2
COORDINATES: protein motif:HMM:TIGR02226.1
COORDINATES: similar to AA sequence:RefSeq:WP_004398740.1
amino acid ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF012707.2
basic amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014818985.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013858.2
COORDINATES: protein motif:HMM:NF024825.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR03408.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter permease subunit UrtB
COORDINATES: protein motif:HMM:TIGR03410.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter ATP-binding subunit UrtE
COORDINATES: protein motif:HMM:NF013899.2
COORDINATES: protein motif:HMM:NF009671.0
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292151.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00416.1
COORDINATES: protein motif:HMM:NF021466.2
COORDINATES: protein motif:HMM:NF003211.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016658.2
COORDINATES: protein motif:HMM:NF013919.2
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:TIGR02127.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014438168.1
COORDINATES: protein motif:HMM:TIGR00499.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001186516.1
COORDINATES: similar to AA sequence:RefSeq:WP_014435720.1
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:NF013868.2
COORDINATES: protein motif:HMM:NF013720.2
glycine cleavage T C-terminal barrel domain-containing protein
COORDINATES: protein motif:HMM:NF012389.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:NF004976.0
GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0006520 - cellular amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012434.2
COORDINATES: similar to AA sequence:RefSeq:WP_003226803.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012424.2
dihydrolipoamide acetyltransferase family protein
COORDINATES: protein motif:HMM:NF016154.2
COORDINATES: similar to AA sequence:RefSeq:WP_003021871.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: protein motif:HMM:NF013308.2
COORDINATES: protein motif:HMM:NF025885.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436288.1
COORDINATES: protein motif:HMM:NF002557.0
COORDINATES: protein motif:HMM:NF014675.2
COORDINATES: protein motif:HMM:NF020075.2
COORDINATES: protein motif:HMM:NF024748.2
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
COORDINATES: protein motif:HMM:NF024240.2
COORDINATES: protein motif:HMM:NF013357.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014437995.1
GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0009002 - serine-type D-Ala-D-Ala carboxypeptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
COORDINATES: protein motif:HMM:NF014600.2
GO:0008233 - peptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: protein motif:HMM:TIGR00665.1
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00113.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: protein motif:HMM:NF013826.2
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:TIGR00225.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436845.1
COORDINATES: protein motif:HMM:NF016162.2
COORDINATES: protein motif:HMM:NF012348.2
COORDINATES: protein motif:HMM:NF013044.2
aromatic ring-hydroxylating dioxygenase subunit alpha
formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:NF024772.2
COORDINATES: protein motif:HMM:NF019960.2
COORDINATES: protein motif:HMM:NF012703.2
COORDINATES: protein motif:HMM:NF013334.2
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: protein motif:HMM:TIGR00073.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF015131.2
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: protein motif:HMM:TIGR00539.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028007.2
COORDINATES: protein motif:HMM:NF013909.2
GO:0051540 - metal cluster binding [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF015177.2
COORDINATES: protein motif:HMM:NF012579.2
COORDINATES: protein motif:HMM:TIGR01389.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF003242.0
cofactor-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF016464.2
COORDINATES: protein motif:HMM:TIGR00196.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF014296.2
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
methylenetetrahydrofolate reductase [NAD(P)H]
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: similar to AA sequence:RefSeq:WP_000724295.1
COORDINATES: protein motif:HMM:TIGR00178.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015737.2
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:TIGR01953.1
COORDINATES: protein motif:HMM:TIGR00487.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013522.2
4-oxalocrotonate tautomerase family protein
COORDINATES: protein motif:HMM:TIGR00082.1
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00070.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012497.2
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR01710.1
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
type II secretion system major pseudopilin GspG
COORDINATES: protein motif:HMM:NF023444.2
COORDINATES: protein motif:HMM:NF023044.2
COORDINATES: protein motif:HMM:NF015867.2
secretin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF039206.1
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016056.2
DCC1-like thiol-disulfide oxidoreductase family protein
COORDINATES: protein motif:HMM:NF006765.0
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF001099.0
COORDINATES: similar to AA sequence:RefSeq:WP_020063210.1
COORDINATES: protein motif:HMM:NF013725.2
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF014584.2
COORDINATES: similar to AA sequence:RefSeq:WP_010886483.1
COORDINATES: protein motif:HMM:TIGR01683.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012413.2
COORDINATES: protein motif:HMM:NF006375.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF013375.2
COORDINATES: protein motif:HMM:TIGR00358.1
GO:0016896 - exoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
VacB/RNase II family 3'-5' exoribonuclease
COORDINATES: protein motif:HMM:NF017902.2
COORDINATES: similar to AA sequence:RefSeq:WP_003112842.1
putative type IV pilus biogenesis protein PilQ
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF037785.2
COORDINATES: protein motif:HMM:NF014325.2
COORDINATES: protein motif:HMM:NF027585.2
COORDINATES: protein motif:HMM:TIGR00654.1
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:NF039482.1
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:TIGR00043.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003229650.1
COORDINATES: protein motif:HMM:NF014961.2
vitamin B12 dependent-methionine synthase activation domain-containing protein
COORDINATES: protein motif:HMM:NF014615.2
homocysteine S-methyltransferase family protein
COORDINATES: protein motif:HMM:NF014703.2
COORDINATES: protein motif:HMM:TIGR01084.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01420.1
GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF019850.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436699.1
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF012899.2
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF015251.2
COORDINATES: protein motif:HMM:NF012743.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: protein motif:HMM:NF014448.2
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdenum cofactor biosynthesis protein MoaE
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF000282.2
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:TIGR01027.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016311.2
glycosyltransferase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF005365.0
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: protein motif:HMM:NF014690.2
COORDINATES: protein motif:HMM:TIGR01307.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF024896.2
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: protein motif:HMM:NF014079.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014801.2
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014437176.1
COORDINATES: protein motif:HMM:TIGR00398.1
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014237.2
COORDINATES: similar to AA sequence:RefSeq:WP_016508523.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
succinate dehydrogenase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF012432.2
COORDINATES: protein motif:HMM:NF014881.2
catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF022100.2
COORDINATES: protein motif:HMM:NF003745.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021524.2
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: protein motif:HMM:NF024045.2
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:NF026199.2
YidC/Oxa1 family insertase periplasmic-domain containing protein
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:TIGR01972.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF005141.0
COORDINATES: protein motif:HMM:NF004321.0
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:NF012709.2
COORDINATES: protein motif:HMM:NF016213.2
COORDINATES: protein motif:HMM:NF013143.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013465.2
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003234625.1
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:NF012885.2
tRNA (cytidine(34)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:TIGR00566.1
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:TIGR00963.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025589.2
COORDINATES: protein motif:HMM:TIGR01966.1
GO:0004549 - tRNA-specific ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:NF015684.2
COORDINATES: protein motif:HMM:TIGR00262.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001377.0
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
indole-3-glycerol phosphate synthase TrpC
type IV pilus twitching motility protein PilT
COORDINATES: protein motif:HMM:NF024602.2
COORDINATES: protein motif:HMM:TIGR00633.1
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:NF014046.2
COORDINATES: protein motif:HMM:TIGR00928.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:TIGR02069.1
GO:0044265 - cellular macromolecule catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015563.2
GO:0015558 - secondary active p-aminobenzoyl-glutamate transmembrane transporter activity [Evidence IEA]
GO:1902604 - p-aminobenzoyl-glutamate transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012471.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF003543.0
GO:0008676 - 3-deoxy-8-phosphooctulonate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:TIGR00132.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: protein motif:HMM:TIGR00135.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: protein motif:HMM:TIGR00158.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00166.1
COORDINATES: protein motif:HMM:TIGR00516.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04137.1
COORDINATES: protein motif:HMM:NF012382.2
COORDINATES: protein motif:HMM:TIGR00433.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013565.2
COORDINATES: protein motif:HMM:TIGR00168.2
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:NF016885.2
zinc-binding alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF013300.2
COORDINATES: protein motif:HMM:NF027582.2
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: protein motif:HMM:NF016239.2
GO:0008770 - [acyl-carrier-protein] phosphodiesterase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013469.2
COORDINATES: protein motif:HMM:NF012393.2
COORDINATES: protein motif:HMM:NF014665.2
COORDINATES: protein motif:HMM:TIGR01473.1
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015102.2
DNA-directed RNA polymerase subunit alpha C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019156.2
COORDINATES: protein motif:HMM:TIGR00208.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF014016.2
CbiX/SirB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR01701.1
COORDINATES: protein motif:HMM:TIGR00129.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: similar to AA sequence:RefSeq:WP_018052518.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF005722.0
NADH-quinone oxidoreductase subunit NuoE
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: protein motif:HMM:NF025468.2
COORDINATES: protein motif:HMM:NF010120.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: protein motif:HMM:NF014659.2
COORDINATES: protein motif:HMM:TIGR01777.1
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: protein motif:HMM:NF012900.2
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:TIGR00634.1
COORDINATES: protein motif:HMM:NF039499.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:TIGR00187.1
COORDINATES: protein motif:HMM:NF038099.1
arsenosugar biosynthesis arsenite methyltransferase ArsM
COORDINATES: protein motif:HMM:TIGR04167.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
Some members of this family are selenoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
arsenosugar biosynthesis radical SAM protein ArsS
COORDINATES: protein motif:HMM:NF013335.2
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:NF014663.2
COORDINATES: protein motif:HMM:NF015691.2
COORDINATES: protein motif:HMM:NF014712.2
carboxyltransferase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00482.1
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0004515 - nicotinate-nucleotide adenylyltransferase activity [Evidence IEA]
nicotinate (nicotinamide) nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:NF012549.2
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF013247.2
COORDINATES: protein motif:HMM:TIGR00131.1
GO:0004335 - galactokinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: protein motif:HMM:TIGR00182.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013908.2
COORDINATES: protein motif:HMM:NF035939.1
COORDINATES: protein motif:HMM:NF019401.2
COORDINATES: protein motif:HMM:NF017833.2
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF016924.2
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:TIGR01134.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF014588.2
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: protein motif:HMM:NF036822.2
COORDINATES: protein motif:HMM:TIGR00197.1
COORDINATES: protein motif:HMM:NF019317.2
COORDINATES: protein motif:HMM:NF001770.0
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF009789.0
COORDINATES: protein motif:HMM:NF016822.2
COORDINATES: protein motif:HMM:NF005602.0
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: protein motif:HMM:NF025167.2
COORDINATES: protein motif:HMM:NF025585.2
COORDINATES: protein motif:HMM:NF024547.2
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF012436.2
DNA starvation/stationary phase protection protein
GO:0006542 - glutamine biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
glutamine synthetase beta-grasp domain-containing protein
COORDINATES: protein motif:HMM:NF028442.2
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: protein motif:HMM:NF040163.1
COORDINATES: similar to AA sequence:RefSeq:WP_014437183.1
COORDINATES: protein motif:HMM:NF014649.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436898.1
COORDINATES: similar to AA sequence:RefSeq:WP_014437172.1
COORDINATES: protein motif:HMM:NF002677.0
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: protein motif:HMM:NF014794.2
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: protein motif:HMM:NF012783.2
ATP-dependent Clp protease proteolytic subunit
COORDINATES: protein motif:HMM:NF023385.2
COORDINATES: protein motif:HMM:NF018980.2
COORDINATES: protein motif:HMM:NF023697.2
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001862.0
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003916.0
GO:0016615 - malate dehydrogenase activity [Evidence IEA]
GO:0006108 - malate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017591.2
phosphoribosylglycinamide formyltransferase
COORDINATES: protein motif:HMM:NF012951.2
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014678.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001097.0
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00165.1
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012550.2
COORDINATES: protein motif:HMM:NF003843.0
COORDINATES: protein motif:HMM:TIGR00089.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
MiaB/RimO family radical SAM methylthiotransferase
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: protein motif:HMM:TIGR01280.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00159.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001221.0
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF015679.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF011071.0
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase
COORDINATES: protein motif:HMM:NF012656.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:TIGR03710.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF015406.2
COORDINATES: protein motif:HMM:NF016176.2
COORDINATES: similar to AA sequence:RefSeq:WP_170844367.1
COORDINATES: protein motif:HMM:TIGR00174.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF005560.0
COORDINATES: protein motif:HMM:NF013227.2
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF012314.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000756756.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:TIGR02289.1
COORDINATES: protein motif:HMM:NF015648.2
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00693.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004559.0
COORDINATES: protein motif:HMM:NF013232.2
MTAP family purine nucleoside phosphorylase
COORDINATES: protein motif:HMM:TIGR00118.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:NF014661.2
COORDINATES: protein motif:HMM:NF004852.0
COORDINATES: protein motif:HMM:NF024921.2
GO:0031362 - anchored component of external side of plasma membrane [Evidence IEA]; GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00237.1
COORDINATES: similar to AA sequence:RefSeq:WP_000441062.1
COORDINATES: protein motif:HMM:NF012784.2
S1 RNA-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00567.1
COORDINATES: similar to AA sequence:RefSeq:WP_000279412.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF014626.2
COORDINATES: protein motif:HMM:NF001813.0
COORDINATES: protein motif:HMM:NF039343.1
CpsB/CapC family capsule biosynthesis tyrosine phosphatase
COORDINATES: protein motif:HMM:NF019845.2
COORDINATES: protein motif:HMM:NF017868.2
gamma-glutamylcyclotransferase family protein
COORDINATES: protein motif:HMM:NF003764.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
3-phosphoserine/phosphohydroxythreonine transaminase
COORDINATES: protein motif:HMM:NF015427.2
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015650714.1
COORDINATES: protein motif:HMM:NF033503.1
nickel pincer cofactor biosynthesis protein LarB
COORDINATES: protein motif:HMM:TIGR02136.1
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR02138.1
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: similar to AA sequence:RefSeq:WP_004810563.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:NF040466.1
COORDINATES: protein motif:HMM:NF005012.1
COORDINATES: similar to AA sequence:RefSeq:WP_000861162.1
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: protein motif:HMM:TIGR01175.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF005548.0
COORDINATES: protein motif:HMM:NF016946.2
GO:0008488 - gamma-glutamyl carboxylase activity [Evidence IEA]
GO:0017187 - peptidyl-glutamic acid carboxylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00498.1
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012705.2
squalene/phytoene synthase family protein
phytoene/squalene synthase family protein
COORDINATES: protein motif:HMM:TIGR03467.1
COORDINATES: protein motif:HMM:TIGR01397.1
COORDINATES: similar to AA sequence:RefSeq:WP_020055846.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020055847.1
COORDINATES: similar to AA sequence:RefSeq:WP_005920153.1
COORDINATES: protein motif:HMM:NF008035.0
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: protein motif:HMM:TIGR02605.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006822499.1
COORDINATES: protein motif:HMM:NF016252.2
COORDINATES: protein motif:HMM:NF003958.0
glucans biosynthesis glucosyltransferase MdoH
COORDINATES: protein motif:HMM:NF013045.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: protein motif:HMM:NF018021.2
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
ABC transporter permease subunit/CPBP intramembrane protease
COORDINATES: protein motif:HMM:NF024897.2
phosphoribosylformylglycinamidine synthase subunit PurQ
COORDINATES: similar to AA sequence:RefSeq:WP_014436348.1
COORDINATES: protein motif:HMM:NF014910.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF003626.0
GO:0033856 - pyridoxine 5'-phosphate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014634.2
COORDINATES: protein motif:HMM:NF008113.2
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: protein motif:HMM:NF023395.2
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: protein motif:HMM:NF002947.1
bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB
CmpA/NrtA family ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012602.2
COORDINATES: protein motif:HMM:TIGR01184.1
COORDINATES: protein motif:HMM:NF007126.0
COORDINATES: protein motif:HMM:NF012481.2
sulfite reductase flavoprotein subunit alpha
COORDINATES: protein motif:HMM:TIGR01317.1
COORDINATES: protein motif:HMM:NF013116.2
COORDINATES: protein motif:HMM:NF019346.2
COORDINATES: protein motif:HMM:TIGR00585.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:NF022853.2
protein-disulfide reductase DsbD family protein
COORDINATES: protein motif:HMM:NF019121.2
COORDINATES: protein motif:HMM:NF037151.2
LpxI, functionally equivalent to LpxH, replaces it in LPS biosynthesis in a minority of bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.
UDP-2,3-diacylglucosamine diphosphatase LpxI
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: similar to AA sequence:RefSeq:WP_010895514.1
COORDINATES: protein motif:HMM:TIGR02436.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00468.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF015995.2
glycine betaine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013528.2
COORDINATES: protein motif:HMM:TIGR00083.1
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
GO:0006747 - FAD biosynthetic process [Evidence IEA]; GO:0009398 - FMN biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024703.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000462687.1
COORDINATES: similar to AA sequence:RefSeq:WP_008807975.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013068113.1
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF024545.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF021365.2
COORDINATES: protein motif:HMM:TIGR00472.1
COORDINATES: protein motif:HMM:NF013219.2
iron chelate uptake ABC transporter family permease subunit
COORDINATES: protein motif:HMM:NF006367.0
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: protein motif:HMM:TIGR00531.1
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: protein motif:HMM:NF011635.0
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF020473.2
COORDINATES: protein motif:HMM:NF013086.2
COORDINATES: protein motif:HMM:NF024818.2
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004080710.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: protein motif:HMM:NF002537.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: protein motif:HMM:NF008775.0
GO:0045900 - negative regulation of translational elongation [Evidence IEA]
energy-dependent translational throttle protein EttA
COORDINATES: protein motif:HMM:NF001567.0
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: protein motif:HMM:TIGR00589.1
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:NF001886.0
COORDINATES: protein motif:HMM:TIGR01510.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:NF011501.0
COORDINATES: protein motif:HMM:NF012717.2
COORDINATES: protein motif:HMM:TIGR01011.1
COORDINATES: protein motif:HMM:TIGR00116.1
COORDINATES: protein motif:HMM:NF006185.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013322.2
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0031119 - tRNA pseudouridine synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF013734.2
COORDINATES: protein motif:HMM:NF024891.2
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013013.2
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014582.2
COORDINATES: protein motif:HMM:NF024758.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:NF024842.2
COORDINATES: protein motif:HMM:NF001810.0
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF024377.2
COORDINATES: protein motif:HMM:NF024232.2
COORDINATES: protein motif:HMM:NF013895.2
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012686.2
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF018043.2
COORDINATES: protein motif:HMM:TIGR03506.1
flagellar hook-basal body complex protein
COORDINATES: protein motif:HMM:NF015896.2
flagellar hook capping FlgD N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: protein motif:HMM:NF014144.2
COORDINATES: protein motif:HMM:TIGR01026.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014196.2
COORDINATES: protein motif:HMM:TIGR00207.1
GO:0009433 - bacterial-type flagellum basal body, C ring [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF013664.2
COORDINATES: protein motif:HMM:NF014143.2
flagellar hook-basal body complex protein FliE
COORDINATES: protein motif:HMM:TIGR01395.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
COORDINATES: protein motif:HMM:NF012935.2
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: protein motif:HMM:NF010568.0
GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA]
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: protein motif:HMM:NF013109.2
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014460.2
COORDINATES: protein motif:HMM:NF002068.0
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: protein motif:HMM:NF008168.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013355.2
COORDINATES: protein motif:HMM:NF014713.2
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000743900.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001209295.1
GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: protein motif:HMM:NF016241.2
COORDINATES: protein motif:HMM:NF018852.2
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: protein motif:HMM:NF015146.2
COORDINATES: similar to AA sequence:RefSeq:WP_016291490.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01536.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_018003270.1
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: similar to AA sequence:RefSeq:WP_001020786.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: protein motif:HMM:NF000942.0
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF014606.2
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]
GO:0043687 - post-translational protein modification [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: protein motif:HMM:TIGR00029.2
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00496.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02075.1
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012621.2
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014438608.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438607.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438606.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438604.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438595.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438594.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438592.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438591.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: protein motif:HMM:NF014740.2
COORDINATES: protein motif:HMM:NF014997.2
COORDINATES: protein motif:HMM:NF014470.2
twin-arginine translocase TatA/TatE family subunit
COORDINATES: similar to AA sequence:RefSeq:WP_000786062.1
COORDINATES: protein motif:HMM:NF009466.0
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: protein motif:HMM:TIGR00551.1
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005413.0
FliA/WhiG family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:NF012662.2
putative flagellar biosynthesis protein FlhF
COORDINATES: protein motif:HMM:TIGR01398.1
COORDINATES: protein motif:HMM:TIGR00328.1
COORDINATES: similar to AA sequence:RefSeq:WP_018287377.1
COORDINATES: protein motif:HMM:NF012373.2
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: protein motif:HMM:NF008864.0
COORDINATES: protein motif:HMM:TIGR00689.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: protein motif:HMM:NF013607.2
COORDINATES: protein motif:HMM:NF013468.2
GO:0003725 - double-stranded RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011001079.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014225.2
COORDINATES: protein motif:HMM:NF014269.2
LON peptidase substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015084.2
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:NF020390.2
COORDINATES: protein motif:HMM:NF019040.2
COORDINATES: protein motif:HMM:TIGR00087.1
GO:0008254 - 3'-nucleotidase activity [Evidence IEA]; GO:0008253 - 5'-nucleotidase activity [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017944086.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003397591.1
COORDINATES: protein motif:HMM:NF021387.2
lactate racemase domain-containing protein
COORDINATES: protein motif:HMM:TIGR01313.1
COORDINATES: protein motif:HMM:NF007039.0
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014696.2
GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF005840.0
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015892.2
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: protein motif:HMM:NF000756.0
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022182.2
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF015647.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03709.1
COORDINATES: protein motif:HMM:NF004189.0
COORDINATES: protein motif:HMM:NF012457.2
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024900.2
COORDINATES: protein motif:HMM:NF016011.2
COORDINATES: protein motif:HMM:NF013478.2
COORDINATES: protein motif:HMM:TIGR01402.1
COORDINATES: protein motif:HMM:NF009438.0
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: protein motif:HMM:NF016250.2
COORDINATES: protein motif:HMM:TIGR02480.1
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012421.2
COORDINATES: protein motif:HMM:TIGR01129.1
COORDINATES: protein motif:HMM:TIGR00739.1
COORDINATES: protein motif:HMM:TIGR00449.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00461.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase
COORDINATES: protein motif:HMM:TIGR00059.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003513.0
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_003130556.1
COORDINATES: protein motif:HMM:TIGR03631.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001460503.1
COORDINATES: similar to AA sequence:RefSeq:WP_003130554.1
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001030947.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017793.2
COORDINATES: protein motif:HMM:NF012345.2
endonuclease III domain-containing protein
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:NF020413.2
COORDINATES: protein motif:HMM:TIGR00007.1
GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
COORDINATES: protein motif:HMM:NF013854.2
non-canonical purine NTP pyrophosphatase
COORDINATES: protein motif:HMM:NF015052.2
COORDINATES: protein motif:HMM:NF013508.2
COORDINATES: protein motif:HMM:TIGR01082.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012478.2
FKBP-type peptidyl-prolyl cis-trans isomerase
peptide ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF014598.2
COORDINATES: protein motif:HMM:TIGR00977.1
GO:0043714 - (R)-citramalate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001159.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037081.2
COORDINATES: protein motif:HMM:NF016925.2
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: protein motif:HMM:TIGR00594.1
COORDINATES: protein motif:HMM:NF024739.2
COORDINATES: protein motif:HMM:NF002190.0
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF004035.0
sulfate adenylyltransferase subunit CysN
COORDINATES: protein motif:HMM:NF009214.0
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:TIGR01083.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02386.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: protein motif:HMM:NF001616.1
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:TIGR00595.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: protein motif:HMM:TIGR01070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025151.2
COORDINATES: protein motif:HMM:TIGR00367.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01034.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01417.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:TIGR00757.1
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00243.1
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: similar to AA sequence:RefSeq:WP_014438543.1
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
COORDINATES: protein motif:HMM:NF001209.0
Fe(3+) ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF018889.2
COORDINATES: protein motif:HMM:NF024436.2
COORDINATES: protein motif:HMM:NF036497.2
COORDINATES: protein motif:HMM:TIGR01198.1
GO:0017057 - 6-phosphogluconolactonase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012470.2
COORDINATES: protein motif:HMM:TIGR00871.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013314.2
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: protein motif:HMM:TIGR00445.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016290.2
GO:0019867 - outer membrane [Evidence IEA]
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF024915.2
outer membrane protein assembly factor BamD
COORDINATES: protein motif:HMM:NF013421.2
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:NF037981.1
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF006183.0
GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006210 - thymine catabolic process [Evidence IEA]; GO:0006212 - uracil catabolic process [Evidence IEA]
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
COORDINATES: protein motif:HMM:NF013921.2
COORDINATES: protein motif:HMM:TIGR01241.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019229.2
COORDINATES: similar to AA sequence:RefSeq:WP_014232231.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011575334.1
COORDINATES: protein motif:HMM:NF028222.2
COORDINATES: protein motif:HMM:NF004491.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025701.2
protease complex subunit PrcB family protein
COORDINATES: protein motif:HMM:TIGR00091.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: protein motif:HMM:TIGR00418.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:TIGR00636.1
GO:0008817 - cob(I)yrinic acid a,c-diamide adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF024093.2
COORDINATES: protein motif:HMM:NF010200.1
GO:0003933 - GTP cyclohydrolase activity [Evidence IEA]
GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: protein motif:HMM:NF023036.2
COORDINATES: protein motif:HMM:TIGR01670.1
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: protein motif:HMM:TIGR01146.1
COORDINATES: protein motif:HMM:NF021073.2
low molecular weight protein-tyrosine-phosphatase
COORDINATES: protein motif:HMM:NF015818.2
COORDINATES: protein motif:HMM:NF040105.1
COORDINATES: protein motif:HMM:NF019220.2
COORDINATES: protein motif:HMM:NF014643.2
COORDINATES: protein motif:HMM:NF012610.2
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF012699.2
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014616.2
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_004933881.1
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:NF006762.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:TIGR01967.1
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013507.2
COORDINATES: protein motif:HMM:TIGR00022.1
COORDINATES: protein motif:HMM:TIGR00268.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
ATP-dependent sacrificial sulfur transferase LarE
COORDINATES: protein motif:HMM:NF014232.2
COORDINATES: protein motif:HMM:NF002194.0
GO:0046314 - phosphocreatine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025044.2
COORDINATES: protein motif:HMM:NF012531.2
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_014436685.1
COORDINATES: protein motif:HMM:NF025436.2
COORDINATES: protein motif:HMM:NF019334.2
COORDINATES: protein motif:HMM:NF024245.2
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF002320.0
COORDINATES: protein motif:HMM:TIGR00731.1
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013368.2
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00224.1
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000880088.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01662.1
COORDINATES: protein motif:HMM:NF012832.2
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF004051.0
COORDINATES: protein motif:HMM:TIGR00214.1
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002086.0
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005306278.1
COORDINATES: protein motif:HMM:NF012404.2
COORDINATES: protein motif:HMM:NF014195.2
flagellar basal body L-ring protein FlgH
COORDINATES: protein motif:HMM:TIGR03170.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: protein motif:HMM:TIGR02488.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
COORDINATES: protein motif:HMM:NF004952.0
COORDINATES: protein motif:HMM:NF003763.0
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00133.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: protein motif:HMM:NF013836.2
GO:0070569 - uridylyltransferase activity [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:NF018484.2
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016013.2
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF014534.2
HPF/RaiA family ribosome-associated protein
COORDINATES: protein motif:HMM:TIGR00368.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:NF015821.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00150.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:NF012795.2
COORDINATES: protein motif:HMM:NF023496.2
COORDINATES: protein motif:HMM:TIGR00575.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF022554.2
COORDINATES: protein motif:HMM:NF016992.2
COORDINATES: protein motif:HMM:NF016253.2
GO:0043683 - type IV pilus assembly [Evidence IEA]; GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF023802.2
COORDINATES: protein motif:HMM:NF012601.2
COORDINATES: protein motif:HMM:TIGR00126.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00005.1
alpha-L-rhamnosidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017922.2
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: protein motif:HMM:TIGR02135.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: protein motif:HMM:NF012576.2
putative phosphoglucomutase/phosphomannomutase
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF003792.0
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF040320.1
COORDINATES: protein motif:HMM:NF014090.2
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
tRNA-dihydrouridine synthase family protein
COORDINATES: protein motif:HMM:NF010696.0
COORDINATES: similar to AA sequence:RefSeq:WP_012216258.1
COORDINATES: protein motif:HMM:NF037131.2
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014438336.1
COORDINATES: protein motif:HMM:NF013575.2
COORDINATES: protein motif:HMM:TIGR00204.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027567.2
COORDINATES: protein motif:HMM:NF013422.2
COORDINATES: protein motif:HMM:NF012455.2
GO:0015250 - water channel activity [Evidence IEA]
GO:0006833 - water transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015438.2
COORDINATES: similar to AA sequence:RefSeq:WP_017146636.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181995.1
urea ABC transporter ATP-binding protein UrtD
COORDINATES: similar to AA sequence:RefSeq:WP_004181994.1
urea ABC transporter permease subunit UrtC
COORDINATES: similar to AA sequence:RefSeq:WP_004181993.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197507.1
COORDINATES: protein motif:HMM:NF015056.2
COORDINATES: protein motif:HMM:NF014305.2
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:NF021778.2
COORDINATES: protein motif:HMM:TIGR01182.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF013555.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
topoisomerase DNA-binding C4 zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF025840.2
COORDINATES: protein motif:HMM:NF013798.2
COORDINATES: protein motif:HMM:TIGR00348.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: protein motif:HMM:NF014503.2
COORDINATES: protein motif:HMM:TIGR00667.1
GO:0008914 - leucyltransferase activity [Evidence IEA]
leucyl/phenylalanyl-tRNA--protein transferase
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:NF024221.2
COORDINATES: protein motif:HMM:NF013123.2
DPP IV N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF004076.0
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: protein motif:HMM:NF006873.0
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF039485.1
COORDINATES: protein motif:HMM:TIGR00326.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: similar to AA sequence:RefSeq:WP_014438211.1
COORDINATES: similar to AA sequence:RefSeq:WP_014438210.1
COORDINATES: protein motif:HMM:NF006883.0
COORDINATES: protein motif:HMM:NF012730.2
COORDINATES: similar to AA sequence:RefSeq:WP_010744464.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF037979.1
COORDINATES: protein motif:HMM:NF024241.2
COORDINATES: protein motif:HMM:NF017009.2
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:TIGR02227.1
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF020398.2
COORDINATES: protein motif:HMM:NF016314.2
COORDINATES: protein motif:HMM:NF012803.2
COORDINATES: protein motif:HMM:TIGR00383.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01312.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014686.2
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: protein motif:HMM:NF023874.2
COORDINATES: protein motif:HMM:NF024759.2
COORDINATES: protein motif:HMM:NF018941.2
COORDINATES: protein motif:HMM:TIGR00020.2
GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:TIGR00500.1
COORDINATES: protein motif:HMM:TIGR00967.1
COORDINATES: similar to AA sequence:RefSeq:WP_016911111.1
COORDINATES: protein motif:HMM:TIGR01021.1
COORDINATES: similar to AA sequence:RefSeq:WP_017794725.1
COORDINATES: protein motif:HMM:TIGR03654.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF001109.0
COORDINATES: similar to AA sequence:RefSeq:WP_010750653.1
COORDINATES: protein motif:HMM:NF000585.0
COORDINATES: similar to AA sequence:RefSeq:WP_002461784.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_006998479.1
COORDINATES: protein motif:HMM:NF013027.2
COORDINATES: similar to AA sequence:RefSeq:WP_013340739.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293501.1
COORDINATES: similar to AA sequence:RefSeq:WP_001148024.1
COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1
COORDINATES: similar to AA sequence:RefSeq:WP_001738551.1
COORDINATES: protein motif:HMM:NF004363.0
COORDINATES: protein motif:HMM:TIGR03953.1
COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1
COORDINATES: similar to AA sequence:RefSeq:WP_006784429.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF001503.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF002898.0
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006189.0
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF006628.0
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00120.1
GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA]
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
COORDINATES: protein motif:HMM:NF012344.2
COORDINATES: protein motif:HMM:NF012343.2
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:NF012720.2
COORDINATES: protein motif:HMM:TIGR02229.1
cytochrome C oxidase subunit IV family protein
COORDINATES: protein motif:HMM:TIGR01845.1
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: protein motif:HMM:NF024923.2
COORDINATES: protein motif:HMM:NF020771.2
COORDINATES: protein motif:HMM:NF003715.0
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: protein motif:HMM:TIGR00044.1
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF016340.2
COORDINATES: protein motif:HMM:NF009895.0
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014438123.1
COORDINATES: protein motif:HMM:NF013995.2
COORDINATES: protein motif:HMM:TIGR00336.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006625.0
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014688.2
COORDINATES: protein motif:HMM:NF022608.2
COORDINATES: protein motif:HMM:NF015087.2
GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]
N-acetylneuraminate synthase family protein
COORDINATES: protein motif:HMM:NF002795.0
GO:0008733 - L-arabinose isomerase activity [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292990.1
COORDINATES: protein motif:HMM:NF020048.2
COORDINATES: protein motif:HMM:NF000768.0
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003921.0
GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014645.2
GO:0009029 - tetraacyldisaccharide 4'-kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01394.1
COORDINATES: protein motif:HMM:NF021510.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: protein motif:HMM:NF003154.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008741 - ribulokinase activity [Evidence IEA]
GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014437893.1
COORDINATES: protein motif:HMM:TIGR03440.2
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021530.2
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016817.2
COORDINATES: protein motif:HMM:NF014166.2
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF024969.2
COORDINATES: similar to AA sequence:RefSeq:WP_016291805.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012488.2
COORDINATES: protein motif:HMM:NF027658.2
COORDINATES: protein motif:HMM:NF013705.2
COORDINATES: protein motif:HMM:TIGR03346.1
COORDINATES: protein motif:HMM:NF015724.2
COORDINATES: similar to AA sequence:RefSeq:WP_014435961.1
COORDINATES: protein motif:HMM:NF009131.0
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01039.1
COORDINATES: protein motif:HMM:NF012931.2
glycoside hydrolase family 20 zincin-like fold domain-containing protein
COORDINATES: protein motif:HMM:TIGR01178.1
GO:0000034 - adenine deaminase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02962.1
GO:0019628 - urate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:TIGR03180.1
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
COORDINATES: protein motif:HMM:TIGR03178.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03383.1
GO:0004846 - urate oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01879.1
COORDINATES: protein motif:HMM:TIGR03214.2
GO:0071522 - ureidoglycine aminohydrolase activity [Evidence IEA]
GO:0010136 - ureide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013134.2
COORDINATES: protein motif:HMM:TIGR02965.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: protein motif:HMM:TIGR02964.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF026221.2
beta-galactosidase trimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014435635.1
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: protein motif:HMM:TIGR00959.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01003.1
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:TIGR00652.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: protein motif:HMM:NF013999.2
outer membrane lipoprotein carrier protein LolA
COORDINATES: protein motif:HMM:NF013490.2
iron dependent repressor, metal binding and dimerization domain protein
COORDINATES: similar to AA sequence:RefSeq:WP_000182930.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211843.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211844.1
COORDINATES: similar to AA sequence:RefSeq:WP_000480208.1
COORDINATES: protein motif:HMM:NF033936.1
COORDINATES: protein motif:HMM:NF014474.2
COORDINATES: protein motif:HMM:NF015956.2
COORDINATES: protein motif:HMM:TIGR01695.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: protein motif:HMM:NF023418.2
transglutaminase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00281.1
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF002270.0
COORDINATES: protein motif:HMM:NF013328.2
DNA-formamidopyrimidine glycosylase family protein
COORDINATES: protein motif:HMM:TIGR01979.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023407.2
COORDINATES: protein motif:HMM:NF022518.2
COORDINATES: protein motif:HMM:NF021759.2
COORDINATES: similar to AA sequence:RefSeq:WP_010918266.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016330.2
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_014435693.1
COORDINATES: protein motif:HMM:NF037096.2
COORDINATES: protein motif:HMM:NF020136.2
COORDINATES: protein motif:HMM:NF015387.2
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00644.1
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: protein motif:HMM:NF006673.0
COORDINATES: protein motif:HMM:TIGR02669.1
COORDINATES: protein motif:HMM:NF018877.2
COORDINATES: protein motif:HMM:NF014851.2
COORDINATES: protein motif:HMM:NF025114.2
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: protein motif:HMM:NF004309.0
GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]
GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA]
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:NF014722.2
protein adenylyltransferase SelO family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: protein motif:HMM:NF010675.0
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_014435903.1
COORDINATES: similar to AA sequence:RefSeq:WP_016291505.1
COORDINATES: protein motif:HMM:NF006718.0
alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB
COORDINATES: protein motif:HMM:NF014668.2
COORDINATES: protein motif:HMM:TIGR00577.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
COORDINATES: protein motif:HMM:TIGR03991.1