Providencia sneebia DSM 19967 plasmid pPSN2, whole genome shotgun sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia.
Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster
Submitted (08-JUN-2012) Field of Genetics & Development, Cornell University, 3125 Comstock Hall, Ithaca, NY 14850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCM001854.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SeqMan v. 8\nGenome Coverage :: 30.0x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/14/2023 09:46:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,240\nCDSs (total) :: 3,168\nGenes (coding) :: 2,964\nCDSs (with protein) :: 2,964\nGenes (RNA) :: 72\nrRNAs :: 5, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 1, 1 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 7\nPseudo Genes (total) :: 204\nCDSs (without protein) :: 204\nPseudo Genes (ambiguous residues) :: 0 of 204\nPseudo Genes (frameshifted) :: 86 of 204\nPseudo Genes (incomplete) :: 126 of 204\nPseudo Genes (internal stop) :: 14 of 204\nPseudo Genes (multiple problems) :: 19 of 204\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
wild caught Drosophila melanogaster hemolymph
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
zonular occludens toxin domain-containing protein
COORDINATES: protein motif:HMM:NF040221.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001762722.1
COORDINATES: similar to AA sequence:RefSeq:WP_001550856.1
COORDINATES: protein motif:HMM:NF012485.2