Mycobacterium paraintracellulare strain M011 plasmid pM011, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).
Genome sequence of clinical Mycobacterium intracellulare strains
Submitted (25-DEC-2020) Contact:Yoshitaka Tateishi Graduate School of Medicine, Niigata University, Bacteriology; 1-757, Asahimachi-dori, Chuo-ku, Niigata 951-8510, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP024252.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly.3 v. 2.3.0\nGenome Coverage :: 104x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 15:32:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,028\nCDSs (total) :: 4,976\nGenes (coding) :: 4,903\nCDSs (with protein) :: 4,903\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 73\nCDSs (without protein) :: 73\nPseudo Genes (ambiguous residues) :: 0 of 73\nPseudo Genes (frameshifted) :: 42 of 73\nPseudo Genes (incomplete) :: 41 of 73\nPseudo Genes (internal stop) :: 5 of 73\nPseudo Genes (multiple problems) :: 14 of 73\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013422047.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005062210.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296238.1
COORDINATES: similar to AA sequence:RefSeq:WP_008258049.1
COORDINATES: similar to AA sequence:RefSeq:WP_008264000.1
COORDINATES: similar to AA sequence:RefSeq:WP_007171677.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008257392.1
PLP-dependent cysteine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008257390.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018791258.1
COORDINATES: similar to AA sequence:RefSeq:WP_008257479.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990916.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007318821.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733691.1
COORDINATES: similar to AA sequence:RefSeq:WP_006553234.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172475.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172458.1
COORDINATES: similar to AA sequence:RefSeq:WP_007170753.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007172489.1
COORDINATES: similar to AA sequence:RefSeq:WP_008264026.1
COORDINATES: similar to AA sequence:RefSeq:WP_015355689.1
COORDINATES: similar to AA sequence:RefSeq:WP_007167174.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017206935.1
COORDINATES: similar to AA sequence:RefSeq:WP_007170232.1