Rhizobium lentis strain BLR27 plasmid p4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomic survey of lentil nodulating bacteria
Submitted (04-MAR-2021) Institute of Biotechnology, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071458.1.\nBacteria and source DNA available from UC Davis Douglas Cook Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14\nAssembly Name :: UCD_BLR27\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1000.0x\nSequencing Technology :: Oxford Nanopore; PacBio RSII; Illumina\n HiSeq; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 06:39:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,286\nCDSs (total) :: 6,219\nGenes (coding) :: 6,025\nCDSs (with protein) :: 6,025\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 194\nCDSs (without protein) :: 194\nPseudo Genes (ambiguous residues) :: 0 of 194\nPseudo Genes (frameshifted) :: 117 of 194\nPseudo Genes (incomplete) :: 113 of 194\nPseudo Genes (internal stop) :: 22 of 194\nPseudo Genes (multiple problems) :: 51 of 194\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003551160.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018496056.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517747.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958428.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068077.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011971051.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014528042.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516654.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654142.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654141.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496482.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011654139.1
GO:0031460 - glycine betaine transport [Evidence IEA]
glycine betaine/L-proline ABC transporter ATP-binding protein ProV
COORDINATES: protein motif:HMM:NF039181.1
COORDINATES: similar to AA sequence:RefSeq:WP_018481134.1
COORDINATES: protein motif:HMM:NF016533.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]; GO:0019748 - secondary metabolic process [Evidence IEA]
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012760251.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516659.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991569.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018856136.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003501815.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015918385.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428704.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007606920.1
COORDINATES: similar to AA sequence:RefSeq:WP_007700336.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003504482.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918380.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018327587.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606913.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047333.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327584.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006832752.1
COORDINATES: similar to AA sequence:RefSeq:WP_008493852.1
COORDINATES: similar to AA sequence:RefSeq:WP_012317752.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918472.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018245818.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018481982.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018481983.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018444940.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018481985.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013960658.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018481987.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015318190.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018481989.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_018444948.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_012649063.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024700.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024642.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012288256.1
COORDINATES: similar to AA sequence:RefSeq:WP_006746765.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503589.1
COORDINATES: similar to AA sequence:RefSeq:WP_012112833.1
COORDINATES: similar to AA sequence:RefSeq:WP_006746768.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605832.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015342532.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019813.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018516708.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516709.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048164.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699340.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482021.1
GO:0061579 - N-acyl homoserine lactone synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516714.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984785.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654887.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637621.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018482056.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018482057.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003525126.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482059.1
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF024553.2
COORDINATES: similar to AA sequence:RefSeq:WP_018516750.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516751.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242384.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003540489.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018482066.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517033.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958590.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958591.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958592.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517037.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517038.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517039.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996970.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325564.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098874.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517369.1
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_017996968.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517065.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012755356.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012755357.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020572027.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517068.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517070.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549684.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517073.1
COORDINATES: similar to AA sequence:RefSeq:WP_018497390.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018484256.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484257.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654699.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018480553.1
COORDINATES: similar to AA sequence:RefSeq:WP_014762748.1
PLP-dependent aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003581607.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008333787.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068288.1
COORDINATES: protein motif:HMM:NF017050.2
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF013086.2
COORDINATES: similar to AA sequence:RefSeq:WP_007815989.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611519.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332409.1
COORDINATES: similar to AA sequence:RefSeq:WP_006615047.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011077905.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967842.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068332.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018496488.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_018068334.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048084.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958613.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484262.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654212.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551769.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551771.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517088.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654216.1
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551781.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967462.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_014762827.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084389.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496568.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517093.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958624.1
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517094.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551805.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068350.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551808.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496573.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_032488436.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875140.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018517103.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018482221.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997123.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958633.1
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551818.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_011654232.1
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_018517503.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532765.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517505.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654236.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018484296.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501921.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020095073.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654154.1
poly(R)-hydroxyalkanoic acid synthase subunit PhaE
COORDINATES: similar to AA sequence:RefSeq:WP_011654155.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: similar to AA sequence:RefSeq:WP_011654159.1
COORDINATES: protein motif:HMM:NF026948.2
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019856540.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007609200.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018263962.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654166.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654167.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654168.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967509.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053406.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654174.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654175.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654176.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_012778801.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654178.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654180.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968929.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020811856.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517310.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654184.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967426.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007798929.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611445.1
COORDINATES: protein motif:HMM:NF021246.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189972.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699031.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533838.1
COORDINATES: similar to AA sequence:RefSeq:WP_003494316.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532617.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_017958664.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496046.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018496048.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_018496049.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_018517733.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958670.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011650212.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549679.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_017996963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
GO:0003674 - molecular_function [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: similar to AA sequence:RefSeq:WP_018485028.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383334.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017267303.1
COORDINATES: similar to AA sequence:RefSeq:WP_046066574.1
GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_019930083.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914104.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246141.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018485036.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017271984.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209622.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485039.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485040.1
COORDINATES: similar to AA sequence:RefSeq:WP_003530542.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485042.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485043.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485046.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485047.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003548532.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018496052.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997028.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485050.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485051.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485052.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654195.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567609.1
COORDINATES: similar to AA sequence:RefSeq:WP_012881221.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068071.1