Rhizobium bangladeshense strain BLR175 plasmid p4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Comparative genomic analysis of Rhizobium strains in Lentils
Submitted (09-MAR-2021) Department of Plant Pathology, Zhejiang University, Yuhangtang, Hangzhou, Zhejiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071616.1.\nBacteria and source DNA available from UC Davis Douglas Cook Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14\nAssembly Name :: Rhizobium_bangladeshense_BLR175\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 06:48:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,101\nCDSs (total) :: 6,037\nGenes (coding) :: 5,853\nCDSs (with protein) :: 5,853\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 184\nCDSs (without protein) :: 184\nPseudo Genes (ambiguous residues) :: 0 of 184\nPseudo Genes (frameshifted) :: 126 of 184\nPseudo Genes (incomplete) :: 109 of 184\nPseudo Genes (internal stop) :: 22 of 184\nPseudo Genes (multiple problems) :: 64 of 184\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003538323.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018071683.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427859.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530136.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008530137.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008523062.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007634987.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047767.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016736950.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007698102.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017997715.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003572500.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556317.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654265.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016736945.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591579.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958302.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654268.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018071749.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556326.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591588.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015411 - ABC-type taurine transporter transporter activity [Evidence IEA]; GO:0030977 - taurine binding [Evidence IEA]
GO:0015734 - taurine transport [Evidence IEA]
taurine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003591590.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736933.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007634950.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483087.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992528.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736929.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446106.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577602.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071762.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003572458.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012556340.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047999.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992524.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003538283.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047996.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591637.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591639.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591641.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018494028.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004676681.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591644.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004676683.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538257.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483078.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_018246719.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538683.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018446100.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_020047979.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012556356.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634889.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427667.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483066.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018071799.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003555614.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577549.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016734492.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483041.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591674.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007634835.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997672.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555452.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018493990.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003538619.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958363.1
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012555455.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004675898.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634817.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992472.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675907.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736874.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003591698.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013761698.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047940.1
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018071836.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007634806.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427700.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004677572.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677570.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003572568.1
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
COORDINATES: similar to AA sequence:RefSeq:WP_007635059.1
sn-glycerol-3-phosphate ABC transporter permease UgpA
COORDINATES: similar to AA sequence:RefSeq:WP_018480638.1
GO:0015794 - glycerol-3-phosphate transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter permease UgpE
COORDINATES: similar to AA sequence:RefSeq:WP_011649640.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562579.1
glycerophosphoryl diester phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_018073121.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011427711.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018070747.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532554.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047908.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532556.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427715.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427717.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010024168.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011427719.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010024165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428862.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
redox-sensitive transcriptional activator SoxR
COORDINATES: similar to AA sequence:RefSeq:WP_011428861.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428860.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_012490179.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594936.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501688.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501689.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003577126.1
COORDINATES: similar to AA sequence:RefSeq:WP_003580756.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763087.1
COORDINATES: similar to AA sequence:RefSeq:WP_008839661.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048751.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205042.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008839664.1
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003545956.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018237578.1
COORDINATES: protein motif:HMM:NF016970.2
COORDINATES: similar to AA sequence:RefSeq:WP_020048745.1
COORDINATES: similar to AA sequence:RefSeq:WP_008839670.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048743.1
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017963085.1
COORDINATES: similar to AA sequence:RefSeq:WP_017965887.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019368400.1
COORDINATES: similar to AA sequence:RefSeq:WP_008433767.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007789080.1
COORDINATES: similar to AA sequence:RefSeq:WP_016847113.1
COORDINATES: similar to AA sequence:RefSeq:WP_020562757.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337723.1
COORDINATES: similar to AA sequence:RefSeq:WP_008974259.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015684954.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592089.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592090.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198481.1
COORDINATES: similar to AA sequence:RefSeq:WP_018114674.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341840.1
COORDINATES: similar to AA sequence:RefSeq:WP_018114676.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817340.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: similar to AA sequence:RefSeq:WP_003572688.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007822514.1
GO:0008658 - penicillin binding [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003575510.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857619.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428446.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018496130.1
putative urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017957639.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537234.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247024.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496126.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957635.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489684.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489683.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537248.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007628816.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011425313.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003576315.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020046896.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996124.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550583.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0008753 - NADPH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007537264.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449136.1
CmpA/NrtA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016735961.1
GO:0015414 - ABC-type nitrate transporter activity [Evidence IEA]
GO:0015706 - nitrate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006699924.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524110.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654375.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992578.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537276.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486131.1
GO:0004328 - formamidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018855620.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_003576343.1
COORDINATES: similar to AA sequence:RefSeq:WP_007826659.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576346.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736802.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674430.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759222.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011428795.1
COORDINATES: similar to AA sequence:RefSeq:WP_011424629.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654245.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017965701.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_016737117.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
GO:0003674 - molecular_function [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003581460.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494560.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737107.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053474.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_016737085.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568473.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635603.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635604.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018325050.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595545.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560015.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524000.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595542.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737074.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568472.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003579306.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246456.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004674662.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737070.1
COORDINATES: similar to AA sequence:RefSeq:WP_010001356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674664.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427744.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007812009.1
GO:0018467 - formaldehyde dehydrogenase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
formaldehyde dehydrogenase, glutathione-independent
COORDINATES: similar to AA sequence:RefSeq:WP_011427747.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800126.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486113.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003577821.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004674672.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496290.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674674.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538494.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654404.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800110.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047867.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529974.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047865.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538486.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555574.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591805.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047860.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047854.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538447.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011654429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517713.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555594.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654431.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591847.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968692.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004670794.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654435.1
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018070680.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538438.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012755578.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591859.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572243.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530030.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968703.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047814.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591896.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047812.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486055.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016736987.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555441.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538368.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572169.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538358.1
COORDINATES: protein motif:HMM:NF015737.2
COORDINATES: similar to AA sequence:RefSeq:WP_017165353.1
COORDINATES: similar to AA sequence:RefSeq:WP_007508863.1
COORDINATES: similar to AA sequence:RefSeq:WP_017156018.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_010364918.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760628.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006793 - phosphorus metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654469.1
aldo/keto reductase family oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018449039.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496342.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427833.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_003572153.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572152.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427835.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555203.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427836.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016736970.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670954.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015242730.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016736967.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470783.1
sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538341.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654483.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634325.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047783.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736962.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496354.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047778.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018246921.1