Rhizobium bangladeshense strain BLR175 plasmid p3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Comparative genomic analysis of Rhizobium strains in Lentils
Submitted (09-MAR-2021) Department of Plant Pathology, Zhejiang University, Yuhangtang, Hangzhou, Zhejiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071615.1.\nBacteria and source DNA available from UC Davis Douglas Cook Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14\nAssembly Name :: Rhizobium_bangladeshense_BLR175\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 06:48:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,101\nCDSs (total) :: 6,037\nGenes (coding) :: 5,853\nCDSs (with protein) :: 5,853\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 184\nCDSs (without protein) :: 184\nPseudo Genes (ambiguous residues) :: 0 of 184\nPseudo Genes (frameshifted) :: 126 of 184\nPseudo Genes (incomplete) :: 109 of 184\nPseudo Genes (internal stop) :: 22 of 184\nPseudo Genes (multiple problems) :: 64 of 184\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018517732.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018517733.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496049.1
GO:0009399 - nitrogen fixation [Evidence IEA]
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_018496048.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_003551756.1
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_018067938.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012787.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008840514.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672573.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004126138.1
GO:0045303 - diaminobutyrate-2-oxoglutarate transaminase activity [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_017271336.1
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010913935.1
acetyl-CoA carboxylase biotin carboxylase subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007759024.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018271875.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003589503.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612156.1
COORDINATES: similar to AA sequence:RefSeq:WP_004124697.1
GO:0008718 - D-amino-acid dehydrogenase activity [Evidence IEA]; GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0055130 - D-alanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017270877.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331796.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_016558830.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014332409.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011746418.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018325646.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018517533.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016558773.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282160.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099666.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271311.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017271310.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018459576.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017271305.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015004678.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271301.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271300.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271299.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271298.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017271297.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017271296.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878079.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013533422.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533423.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013533424.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875182.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875194.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_017271333.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271265.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013845853.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017270830.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572294.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017270592.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572292.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537222.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003537613.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008945048.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_076611806.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013533457.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611975.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003543738.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018099510.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
COORDINATES: similar to AA sequence:RefSeq:WP_007881492.1
COORDINATES: similar to AA sequence:RefSeq:WP_011424135.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974358.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271382.1
COORDINATES: similar to AA sequence:RefSeq:WP_007792578.1
GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536741.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053446.1
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014531750.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531747.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533421.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878078.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967509.1
COORDINATES: similar to AA sequence:RefSeq:WP_003993572.1
GO:0033990 - ectoine synthase activity [Evidence IEA]
GO:0019491 - ectoine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611391.1
COORDINATES: similar to AA sequence:RefSeq:WP_006606340.1
COORDINATES: similar to AA sequence:RefSeq:WP_008957867.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF008352.0
COORDINATES: similar to AA sequence:RefSeq:WP_018325624.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328973.1
COORDINATES: similar to AA sequence:RefSeq:WP_009469626.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330531.1
COORDINATES: similar to AA sequence:RefSeq:WP_018093941.1
COORDINATES: similar to AA sequence:RefSeq:WP_017616632.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485051.1
COORDINATES: similar to AA sequence:RefSeq:WP_012483855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012483854.1
COORDINATES: similar to AA sequence:RefSeq:WP_016733900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012483852.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018493469.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654236.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517505.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003532765.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517503.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654232.1
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_003551818.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958633.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997123.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482221.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018517103.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875140.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_032488436.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496573.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_003551808.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068350.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551805.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517094.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958624.1
GO:0000036 - acyl carrier activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517093.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496568.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084389.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
COORDINATES: similar to AA sequence:RefSeq:WP_014762827.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967462.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_003551781.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654216.1
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517088.1
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018484272.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736897.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517085.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_003591660.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517083.1
COORDINATES: similar to AA sequence:RefSeq:WP_015314250.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517081.1
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: similar to AA sequence:RefSeq:WP_015241633.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017958610.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012758520.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014528527.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654699.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018484257.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484256.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018497390.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517073.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549684.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612137.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397287.1
COORDINATES: similar to AA sequence:RefSeq:WP_020572027.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012755357.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755356.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517065.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017996968.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755353.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098874.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_018325564.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996970.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517039.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517038.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517037.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958592.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958591.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958590.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517033.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018482066.1
GO:0003824 - catalytic activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017964507.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0006102 - isocitrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017964666.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008535297.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018516751.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533454.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482060.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018482059.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525126.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482057.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427427.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048110.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654887.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_017273098.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558661.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048121.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048122.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482044.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_020397338.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_015341946.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_011970269.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020048129.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516729.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018516728.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013500664.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048146.1
COORDINATES: similar to AA sequence:RefSeq:WP_008936382.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020048148.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097602.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018516723.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_020048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_017273085.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_011970259.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018210390.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482021.1
GO:0061579 - N-acyl homoserine lactone synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048163.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048164.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516709.1
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: protein motif:HMM:NF024278.2
COORDINATES: similar to AA sequence:RefSeq:WP_014332786.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018391648.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495929.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448902.1
COORDINATES: similar to AA sequence:RefSeq:WP_007592169.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017992791.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018516706.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
COORDINATES: protein motif:HMM:NF021594.2
COORDINATES: similar to AA sequence:RefSeq:WP_011982997.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516696.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551689.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241895.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654108.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982795.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
COORDINATES: similar to AA sequence:RefSeq:WP_016842008.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009503116.1
COORDINATES: similar to AA sequence:RefSeq:WP_020648026.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016842018.1
COORDINATES: protein motif:HMM:NF012699.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011384943.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
COORDINATES: protein motif:HMM:NF019342.2
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF013088.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020095073.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014531109.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567609.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654195.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485052.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008509890.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488589.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_018496488.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068332.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018484296.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517771.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532617.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: similar to AA sequence:RefSeq:WP_012759309.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611445.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048042.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068077.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958428.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958427.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496056.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_003551160.1
COORDINATES: similar to AA sequence:RefSeq:WP_012881221.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611421.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611367.1
COORDINATES: protein motif:HMM:TIGR00035.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013640376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975328.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011077905.1
COORDINATES: protein motif:HMM:NF015437.2
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_076611442.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611554.1
programmed frameshift; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012709859.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496052.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997028.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856540.1
COORDINATES: similar to AA sequence:RefSeq:WP_011650212.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549679.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_017996963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654243.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823789.1
GO:0003674 - molecular_function [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_017271259.1