Babesia microti strain RI mitochondrion, isoform 3 complete genome.
type: Entry
definition: Babesia microti strain RI mitochondrion, isoform 3 complete genome.
sequence version: NC_034637.1
sequence date: 2023-04-04
sequence: sequence
division: INV
label: NC_034637.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
dblink: SAMEA3139016
keyword: RefSeq
keyword: complete genome
keyword: mitochondrion
source: mitochondrion Babesia microti strain RI
organism: Babesia microti strain RI
taxonomy: Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Piroplasmida; Babesiidae; Babesia.
reference: 1
references: 24023759
reference: 2
references: 22833609
reference: 3
reference: 4
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to LN871602.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 10547
topology: linear
so has quality: SO_0000987
location: 1..10547
location: region:1-10547:1
RO_0002162: 1133968

NC_034637
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

SAMEA3139016
type: BioSample
SIO_000068: biosample

1
title: Whole genome mapping and re-organization of the nuclear and mitochondrial genomes of Babesia microti isolates
author: Cornillot, E.
author: Dassouli, A.
author: Garg, A.
author: Pachikara, N.
author: Randazzo, S.
author: Depoix, D.
author: Carcy, B.
author: Delbecq, S.
author: Frutos, R.
author: Silva, J.C.
author: Sutton, R.
author: Krause, P.J.
author: Mamoun, C.B.
journal: PLoS ONE 8 (9), E72657 (2013)
pubmed: 24023759
comments: Publication Status: Online-Only

24023759
type: PubMed
SIO_000068: pubmed

2
title: Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti
author: Cornillot, E.
author: Hadj-Kaddour, K.
author: Dassouli, A.
author: Noel, B.
author: Ranwez, V.
author: Vacherie, B.
author: Augagneur, Y.
author: Bres, V.
author: Duclos, A.
author: Randazzo, S.
author: Carcy, B.
author: Debierre-Grockiego, F.
author: Delbecq, S.
author: Moubri-Menage, K.
author: Shams-Eldin, H.
author: Usmani-Brown, S.
author: Bringaud, F.
author: Wincker, P.
author: Vivares, C.P.
author: Schwarz, R.T.
author: Schetters, T.P.
author: Krause, P.J.
author: Gorenflot, A.
author: Berry, V.
author: Barbe, V.
author: Ben Mamoun, C.
journal: Nucleic Acids Res.
volume: 40
issue: 18
pages: 9102-9114
year: 2012
pubmed: 22833609

22833609
type: PubMed
SIO_000068: pubmed

3
title: Direct Submission
journal: Submitted (26-MAY-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

4
title: Direct Submission
author: Genoscope -, C.E.A.
journal: Submitted (13-APR-2015) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10547:1
position: 10547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10547:1:source
so part of: sequence
organism: Babesia microti strain RI
organelle: mitochondrion
mol type: genomic DNA
strain: RI
note: isoform 3

1133968
type: Taxonomy
SIO_000068: taxonomy

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 1133968
note: IR-A
rpt family: IR-A
so part of: sequence
location: complement(1..741)
location: region:1-741:-1
so has part: feature:1-741:-1:region

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:741:-1
position: 741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-741:-1:region

B661_mgr01
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: LSU6
locus tag: B661_mgr01
old locus tag: BmR1_mt00030
so part of: sequence
location: complement(792..834)
location: region:792-834:-1
so has part: feature:792-834:-1:exon
subclass of: SO_0000573

32900274
type: Gene
SIO_000068: ncbigene

position:792:-1
position: 792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:834:-1
position: 834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792-834:-1:exon

B661_mgr01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: LSU6
locus tag: B661_mgr01
old locus tag: BmR1_mt00030
note: rRNA gene, fragment of LSU gene
SIO_010081: B661_mgr01
subclass of: SO_0000673
so part of: B661_mgr01
location: complement(792..834)
location: region:792-834:-1
so has part: feature:792-834:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:792-834:-1:exon

B661_mgr02
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: LSU2
locus tag: B661_mgr02
old locus tag: BmR1_mt00025
so part of: sequence
location: complement(862..896)
location: region:862-896:-1
so has part: feature:862-896:-1:exon
subclass of: SO_0000573

32900271
type: Gene
SIO_000068: ncbigene

position:862:-1
position: 862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:896:-1
position: 896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:862-896:-1:exon

B661_mgr02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: LSU2
locus tag: B661_mgr02
old locus tag: BmR1_mt00025
note: rRNA gene, fragment of LSU gene
SIO_010081: B661_mgr02
subclass of: SO_0000673
so part of: B661_mgr02
location: complement(862..896)
location: region:862-896:-1
so has part: feature:862-896:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:862-896:-1:exon

B661_mgp03
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: cob
locus tag: B661_mgp03
old locus tag: BmR1_mt00020
so part of: sequence
location: complement(894..2012)
location: region:894-2012:-1
so has part: feature:894-2012:-1:exon
subclass of: SO_0000010

32888535
type: Gene
SIO_000068: ncbigene

position:894:-1
position: 894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2012:-1
position: 2012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:894-2012:-1:exon

B661_mgp03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1133968
gene: cob
locus tag: B661_mgp03
old locus tag: BmR1_mt00020
note: cob, synonyme: cytb, precise initiation codon uncertain: chosen according to table 4 and alignments with other piroplasm proteins
codon start: 1
transl table: 4
product: apocytochrome b
translation: MTVRFAVNLLLSQLISYSVPINLNSNWNIGFILGIVLVMQILTGVILSFNYVAVAPDAYYSIAYILEDIHNGYLYRYLHSNGVCLFFMFMYAHLIKGLWYSCTYLPLSWYTGIVILMLSYAIGFMGYVLPYGQMSYWGATVIINLFYWNKGLTELLLGNYSVNSSTLGRFYILHFILPFVMLLMIVIHIYYLHLNSSSNPLSVVDSYSSIRFSPTVLASDIYMMAITSMLIVSQLAYAIIPLFTGDSDNSLLADPLMTPLHIVPEWYLLPFYGTLKLLPTKLSGLVTMLVFIQTLVQTVEQRNNATVLSLYNVHRTYSHRRVLLIPLLVTIGYLGMYHLNLFTTQVGIYVLLLYLLIGQTSVTCSSTRLRSL
SIO_010081: B661_mgp03
subclass of: SO_0000673
so part of: B661_mgp03
location: complement(894..2012)
location: region:894-2012:-1
so has part: feature:894-2012:-1:exon

YP_009363186.1
type: Protein
SIO_000068: ncbiprotein

A0A0K3AQ17
type: GOA
SIO_000068: goa

IPR005797
type: InterPro
SIO_000068: interpro

IPR005798
type: InterPro
SIO_000068: interpro

IPR016174
type: InterPro
SIO_000068: interpro

IPR027387
type: InterPro
SIO_000068: interpro

A0A0K3AQ17
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:894-2012:-1:exon

B661_mgr03
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: LSU5
locus tag: B661_mgr03
old locus tag: BmR1_mt00015
so part of: sequence
location: complement(2018..2085)
location: region:2018-2085:-1
so has part: feature:2018-2085:-1:exon
subclass of: SO_0000573

32900267
type: Gene
SIO_000068: ncbigene

position:2018:-1
position: 2018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2085:-1
position: 2085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2018-2085:-1:exon

B661_mgr03
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: LSU5
locus tag: B661_mgr03
old locus tag: BmR1_mt00015
note: rRNA gene, fragment of LSU gene
SIO_010081: B661_mgr03
subclass of: SO_0000673
so part of: B661_mgr03
location: complement(2018..2085)
location: region:2018-2085:-1
so has part: feature:2018-2085:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2018-2085:-1:exon

B661_mgr04
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: LSU4
locus tag: B661_mgr04
old locus tag: BmR1_mt00010
so part of: sequence
location: 2149..2231
location: region:2149-2231:1
so has part: feature:2149-2231:1:exon
subclass of: SO_0000573

32900270
type: Gene
SIO_000068: ncbigene

position:2149:1
position: 2149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2231:1
position: 2231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2149-2231:1:exon

B661_mgr04
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: LSU4
locus tag: B661_mgr04
old locus tag: BmR1_mt00010
note: rRNA gene, fragment of LSU gene
SIO_010081: B661_mgr04
subclass of: SO_0000673
so part of: B661_mgr04
location: 2149..2231
location: region:2149-2231:1
so has part: feature:2149-2231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2149-2231:1:exon

B661_mgp02
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: cox1
locus tag: B661_mgp02
old locus tag: BmR1_mt00005
so part of: sequence
location: complement(2633..4078)
location: region:2633-4078:-1
so has part: feature:2633-4078:-1:exon
subclass of: SO_0000010

32888536
type: Gene
SIO_000068: ncbigene

position:2633:-1
position: 2633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4078:-1
position: 4078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2633-4078:-1:exon

B661_mgp02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1133968
gene: cox1
locus tag: B661_mgp02
old locus tag: BmR1_mt00005
note: precise initiation codon uncertain
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit I
translation: MTLWAFKAMLFTSICANHKVVGISYLWLSYIFGIVGFYLSLIIRGELGSSGDRFIAIDIVDIYNLAFTLHGVIMIFFNIMPGLFGGIGNYLLPILVGAPEVVFPRANLYSLLLQPLAFALVVSSLYCEVSGGTGWTLYPPLSTSITTLSVDLIISGLIISGIASVMSSVNFVCTFNSLKCIGMLLDRQLPTSWSIYITSVLLLVTLPVLTAALCMLLADRHYNTMLFDPTNAGDPILYQHLFWVFGHPEVYVLILPAFGIISLILACTTSKEVFGNQTMIIAMASIAIIGCLVWVHHMYTSGVEVDTRSYFTTTTILIALPTGNKIFNWICTLQSTVVNRYLGIIQIVIAFIVTFTLGGTTGVVLGNAGIDVSLHDTAYVVAHFHFVLSIGAILALLAFIAFTQRLMLEVVITNRCLIVLVPIMVLAILLTFTPMHFLGFATLPRRIPDYGDEVWSWNALCSIGSTMLFIIKILLLYILTL
SIO_010081: B661_mgp02
subclass of: SO_0000673
so part of: B661_mgp02
location: complement(2633..4078)
location: region:2633-4078:-1
so has part: feature:2633-4078:-1:exon

YP_009363187.1
type: Protein
SIO_000068: ncbiprotein

A0A0K3API2
type: GOA
SIO_000068: goa

IPR000883
type: InterPro
SIO_000068: interpro

IPR023615
type: InterPro
SIO_000068: interpro

IPR023616
type: InterPro
SIO_000068: interpro

A0A0K3API2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:2633-4078:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 1133968
note: rpt_unit: IR-A
so part of: sequence
location: 4090..4830
location: region:4090-4830:1
so has part: feature:4090-4830:1:region

position:4090:1
position: 4090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4830:1
position: 4830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4090-4830:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 1133968
rpt family: IR-B
so part of: sequence
location: complement(5433..6610)
location: region:5433-6610:-1
so has part: feature:5433-6610:-1:region

position:5433:-1
position: 5433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6610:-1
position: 6610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5433-6610:-1:region

B661_mgp01
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: cox3
locus tag: B661_mgp01
old locus tag: BmR1_mt00035
so part of: sequence
location: 6896..7549
location: region:6896-7549:1
so has part: feature:6896-7549:1:exon
subclass of: SO_0000010

32888532
type: Gene
SIO_000068: ncbigene

position:6896:1
position: 6896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7549:1
position: 7549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6896-7549:1:exon

B661_mgp01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1133968
gene: cox3
locus tag: B661_mgp01
old locus tag: BmR1_mt00035
note: precise initiation codon uncertain
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit 3
translation: MVVYSYINSLYSSTLKELSSGMFLVNVVLSLLSTLQENAETLTFTVYSIIGSVILSELLLFISLIYSVLHSTVCKDPVDLSQATECIESLTDSLGLGCAATTLLLFEGRDRCYTLYSKYNDVCTLSAILYSYIQSNEYNNMLNYVNTSSIQGLFYCITVVHALHVLLGVSLIMIDSINHSEYYDNIIVDSYLYLYIATYWHFVEAVWLSLLSLLYMY
SIO_010081: B661_mgp01
subclass of: SO_0000673
so part of: B661_mgp01
location: 6896..7549
location: region:6896-7549:1
so has part: feature:6896-7549:1:exon

YP_009363188.1
type: Protein
SIO_000068: ncbiprotein

A0A0K3API7
type: GOA
SIO_000068: goa

IPR000298
type: InterPro
SIO_000068: interpro

IPR013833
type: InterPro
SIO_000068: interpro

IPR024791
type: InterPro
SIO_000068: interpro

A0A0K3API7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:6896-7549:1:exon

B661_mgr05
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: SSU6
locus tag: B661_mgr05
old locus tag: BmR1_mt00040
so part of: sequence
location: 7775..7810
location: region:7775-7810:1
so has part: feature:7775-7810:1:exon
subclass of: SO_0000573

32900268
type: Gene
SIO_000068: ncbigene

position:7775:1
position: 7775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7810:1
position: 7810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7775-7810:1:exon

B661_mgr05
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: SSU6
locus tag: B661_mgr05
old locus tag: BmR1_mt00040
note: rRNA gene, fragment of SSU gene
SIO_010081: B661_mgr05
subclass of: SO_0000673
so part of: B661_mgr05
location: 7775..7810
location: region:7775-7810:1
so has part: feature:7775-7810:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7775-7810:1:exon

B661_mgr06
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: SSU7
locus tag: B661_mgr06
old locus tag: BmR1_mt00045
so part of: sequence
location: 7965..8021
location: region:7965-8021:1
so has part: feature:7965-8021:1:exon
subclass of: SO_0000573

32900272
type: Gene
SIO_000068: ncbigene

position:7965:1
position: 7965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8021:1
position: 8021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7965-8021:1:exon

B661_mgr06
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: SSU7
locus tag: B661_mgr06
old locus tag: BmR1_mt00045
note: rRNA gene, fragment of SSU gene
SIO_010081: B661_mgr06
subclass of: SO_0000673
so part of: B661_mgr06
location: 7965..8021
location: region:7965-8021:1
so has part: feature:7965-8021:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7965-8021:1:exon

B661_mgr07
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: LSU1
locus tag: B661_mgr07
old locus tag: BmR1_mt00050
so part of: sequence
location: 8041..8291
location: region:8041-8291:1
so has part: feature:8041-8291:1:exon
subclass of: SO_0000573

32900273
type: Gene
SIO_000068: ncbigene

position:8041:1
position: 8041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8291:1
position: 8291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8041-8291:1:exon

B661_mgr07
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: LSU1
locus tag: B661_mgr07
old locus tag: BmR1_mt00050
note: rRNA gene, fragment of LSU gene
SIO_010081: B661_mgr07
subclass of: SO_0000673
so part of: B661_mgr07
location: 8041..8291
location: region:8041-8291:1
so has part: feature:8041-8291:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8041-8291:1:exon

B661_mgr08
type: Gene
subclass of: SO_0000704
RO_0002162: 1133968
gene: LSU3
locus tag: B661_mgr08
old locus tag: BmR1_mt00055
so part of: sequence
location: complement(8355..8465)
location: region:8355-8465:-1
so has part: feature:8355-8465:-1:exon
subclass of: SO_0000573

32900269
type: Gene
SIO_000068: ncbigene

position:8355:-1
position: 8355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8465:-1
position: 8465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8355-8465:-1:exon

B661_mgr08
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1133968
gene: LSU3
locus tag: B661_mgr08
old locus tag: BmR1_mt00055
note: rRNA gene, fragment of LSU gene
SIO_010081: B661_mgr08
subclass of: SO_0000673
so part of: B661_mgr08
location: complement(8355..8465)
location: region:8355-8465:-1
so has part: feature:8355-8465:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8355-8465:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 1133968
rpt family: IR-B
so part of: sequence
location: 9370..10547
location: region:9370-10547:1
so has part: feature:9370-10547:1:region

position:9370:1
position: 9370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9370-10547:1:region