Melitaea cinxia chromosome 20, ilMelCinx1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Melitaea.
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
REFSEQ INFORMATION: The reference sequence is identical to\nHG992229.1.\nAssembly name: ilMelCinx1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the WELLCOME SANGER INSTITUTE on\n2021/02/16.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: WELLCOME SANGER INSTITUTE\nAssembly Method :: SOAPdenovo v. 1.05; Newbler v. 2.6; MIP\n Scaffolder v. MARCH-2012\nAssembly Name :: MelCinx1.0\nLong Assembly Name :: Melitaea cinxia 1.0\nGenome Coverage :: 70.0x\nSequencing Technology :: Illumina; 454; SOLiD\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Melitaea cinxia Annotation Release\n 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
COORDINATES: polyA evidence [ECO:0006239]
TWiK family of potassium channels protein 7-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
piggyBac transposable element-derived protein 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
TWiK family of potassium channels protein 18-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
60S acidic ribosomal protein P2, transcript variant X1
60S acidic ribosomal protein P2, transcript variant X2
COORDINATES: nucleotide motif:Rfam:12.0:RF00535
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66% coverage of the annotated genomic feature by RNAseq alignments
gustatory receptor for sugar taste 43a-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
general odorant-binding protein 84a-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
uncharacterized LOC123663389, transcript variant X3
uncharacterized LOC123663389, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized LOC123663389, transcript variant X1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon GGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 24% coverage of the annotated genomic feature by RNAseq alignments
leucine-rich repeat extensin-like protein 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 54% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
cell cycle checkpoint control protein RAD9A
ubiquitin-conjugating enzyme E2 G1, transcript variant X1
ubiquitin-conjugating enzyme E2 G1 isoform X1
ubiquitin-conjugating enzyme E2 G1, transcript variant X2
ubiquitin-conjugating enzyme E2 G1 isoform X2
rDNA transcriptional regulator pol5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
eukaryotic translation initiation factor 4H, transcript variant X1
eukaryotic translation initiation factor 4H
eukaryotic translation initiation factor 4H, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
serine/threonine-protein phosphatase 4 catalytic subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
glucose dehydrogenase [FAD, quinone]-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 33% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
glutamate receptor ionotropic, kainate 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: glutamate receptor ionotropic, kainate 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA tryptophan (anticodon CCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments
elongation of very long chain fatty acids protein AAEL008004-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
protein ABHD11-like, transcript variant X1
protein ABHD11-like, transcript variant X2
2-(3-amino-3-carboxypropyl)histidine synthase subunit 1
MOG interacting and ectopic P-granules protein 1-like
CDP-diacylglycerol--inositol 3-phosphatidyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 17% coverage of the annotated genomic feature by RNAseq alignments
coiled-coil domain-containing protein 86
actin-related protein 2/3 complex subunit 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
short-chain specific acyl-CoA dehydrogenase, mitochondrial
polymerase delta-interacting protein 2, transcript variant X1
polymerase delta-interacting protein 2, transcript variant X2
polymerase delta-interacting protein 2 isoform X1
polymerase delta-interacting protein 2 isoform X2
5'-AMP-activated protein kinase catalytic subunit alpha-2
uncharacterized LOC123663195, transcript variant X1
uncharacterized LOC123663195, transcript variant X2
uncharacterized protein LOC123663195 isoform X1
uncharacterized protein LOC123663195 isoform X2
cytosolic 10-formyltetrahydrofolate dehydrogenase
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7-like
calcium release-activated calcium channel protein 1-like
methyl-CpG-binding domain protein 4-like
jmjC domain-containing histone demethylation protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
trichoplein keratin filament-binding protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
mediator of RNA polymerase II transcription subunit 31-A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
gastrula zinc finger protein XlCGF26.1-like
eukaryotic translation initiation factor 3 subunit C
histone-lysine N-methyltransferase PR-Set7
ATP synthase subunit C lysine N-methyltransferase
probable 18S rRNA (guanine-N(7))-methyltransferase
DNA replication ATP-dependent helicase/nuclease DNA2
transmembrane emp24 domain-containing protein 2
histone-lysine N-methyltransferase SETD1
cytochrome b-c1 complex subunit 6, mitochondrial
uncharacterized LOC123663757, transcript variant X2
uncharacterized LOC123663757, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
uncharacterized LOC123663757, transcript variant X1
uncharacterized protein LOC123663757 isoform X2
uncharacterized protein LOC123663757 isoform X3
uncharacterized protein LOC123663757 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
calponin homology domain-containing protein DDB_G0272472 isoform X1
peptidoglycan-recognition protein LB-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
small G protein signaling modulator 2-like
vacuolar protein sorting-associated protein 33A
neurogenic locus notch homolog protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
squamous cell carcinoma antigen recognized by T-cells 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 68% coverage of the annotated genomic feature by RNAseq alignments
39S ribosomal protein L44, mitochondrial
LOW QUALITY PROTEIN: uncharacterized protein LOC123663649
myosin regulatory light chain sqh, transcript variant X2
myosin regulatory light chain sqh, transcript variant X1
dnaJ homolog subfamily C member 30, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
vacuolar protein sorting-associated protein 37C
N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
phosphatidylinositol transfer protein alpha isoform
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123663399, transcript variant X2
uncharacterized LOC123663399, transcript variant X1
uncharacterized protein LOC123663399 isoform X2
uncharacterized protein LOC123663399 isoform X1
E3 ubiquitin-protein ligase SINA-like 5, transcript variant X2
E3 ubiquitin-protein ligase SINA-like 5 isoform X2
E3 ubiquitin-protein ligase SINA-like 5, transcript variant X1
E3 ubiquitin-protein ligase SIAH1-like isoform X1
macrophage migration inhibitory factor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
28S ribosomal protein S15, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
iron-sulfur cluster co-chaperone protein HscB
transcription initiation protein SPT3 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 40% coverage of the annotated genomic feature by RNAseq alignments
TWiK family of potassium channels protein 12-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
probable ATP-dependent RNA helicase kurz
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
histone-lysine N-methyltransferase SETMAR-like
putative tricarboxylate transport protein, mitochondrial
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
LOW QUALITY PROTEIN: uncharacterized protein LOC123663678
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
phosphatidylethanolamine-binding protein homolog F40A3.3-like, transcript variant X2
phosphatidylethanolamine-binding protein homolog F40A3.3-like, transcript variant X3
phosphatidylethanolamine-binding protein homolog F40A3.3-like, transcript variant X4
phosphatidylethanolamine-binding protein homolog F40A3.3-like, transcript variant X1
phosphatidylethanolamine-binding protein homolog F40A3.3-like isoform X3
max-binding protein MNT-like, transcript variant X1
max-binding protein MNT-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 87 samples with support for all annotated introns
max-binding protein MNT-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
max-binding protein MNT-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 86 samples with support for all annotated introns
phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
CCR4-NOT transcription complex subunit 10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123663463, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123663463, transcript variant X1
mediator of RNA polymerase II transcription subunit 21-like
uncharacterized LOC123663425, transcript variant X2
uncharacterized LOC123663425, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
phosphatidylethanolamine-binding protein homolog F40A3.3-like
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
ectonucleoside triphosphate diphosphohydrolase 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
3-oxoacyl-[acyl-carrier-protein] reductase FabG-like
protein lethal(2)k10201, transcript variant X1
protein lethal(2)k10201, transcript variant X3
protein lethal(2)k10201, transcript variant X2
mitochondrial import inner membrane translocase subunit Tim22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
proline dehydrogenase 1, mitochondrial, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
proline dehydrogenase 1, mitochondrial, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
proline dehydrogenase 1, mitochondrial isoform X2
proline dehydrogenase 1, mitochondrial isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 63% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
peptidyl-tRNA hydrolase 2, mitochondrial-like
coiled-coil domain-containing protein 42 homolog, transcript variant X1
coiled-coil domain-containing protein 42 homolog
coiled-coil domain-containing protein 42 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 198 samples with support for all annotated introns
serine/threonine-protein phosphatase alpha-2 isoform, transcript variant X1
serine/threonine-protein phosphatase alpha-2 isoform, transcript variant X2
serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform X2
serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform X1
serine/threonine-protein phosphatase alpha-2 isoform, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
serine/threonine-protein phosphatase alpha-2 isoform isoform X3
outer dynein arm-docking complex subunit 1-like
coiled-coil domain-containing protein 63-like
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC123663522
vacuolar protein sorting-associated protein 29
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon AAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
ubiquitin carboxyl-terminal hydrolase 32
transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
serine/threonine-protein phosphatase Pgam5, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 4% coverage of the annotated genomic feature by RNAseq alignments
endoplasmic reticulum resident protein 29
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 160 samples with support for all annotated introns
ran-specific GTPase-activating protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69% coverage of the annotated genomic feature by RNAseq alignments
leucine-zipper-like transcriptional regulator 1 homolog
actin-related protein 2/3 complex subunit 4
ubiquitin fusion degradation protein 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
serine--tRNA synthetase-like protein Slimp
transport and Golgi organization protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72% coverage of the annotated genomic feature by RNAseq alignments
trafficking protein particle complex subunit 3
glycine-rich protein 5-like, transcript variant X2
glycine-rich protein 5-like, transcript variant X1
zinc finger HIT domain-containing protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
structure-specific endonuclease subunit SLX1 homolog
aldo-keto reductase AKR2E4-like, transcript variant X2
aldo-keto reductase AKR2E4-like, transcript variant X3
aldo-keto reductase AKR2E4-like, transcript variant X1
aldo-keto reductase AKR2E4-like isoform X2
aldo-keto reductase AKR2E4-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 199 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: odorant receptor coreceptor
transfer RNA arginine (anticodon UCG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns
eukaryotic translation initiation factor 3 subunit A
TBC1 domain family member whacked, transcript variant X1
TBC1 domain family member whacked, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
39S ribosomal protein L18, mitochondrial
splicing factor, arginine/serine-rich 19
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
eukaryotic translation initiation factor 4E transporter-like
NPC intracellular cholesterol transporter 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
somatomedin-B and thrombospondin type-1 domain-containing protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 3% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 3 bases at 3 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: fatty acid synthase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
CLIP domain-containing serine protease 14D-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
DNA-directed RNA polymerase III subunit RPC10, transcript variant X2
DNA-directed RNA polymerase III subunit RPC10, transcript variant X1
DNA-directed RNA polymerase III subunit RPC10 isoform X2
DNA-directed RNA polymerase III subunit RPC10 isoform X1
yrdC domain-containing protein, mitochondrial
mitochondrial inner membrane protease subunit 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein KIAA2013 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
trichoplein keratin filament-binding protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 29% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting-associated protein 45, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting-associated protein 45, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting-associated protein 45, transcript variant X3
vacuolar protein sorting-associated protein 45 isoform X2
vacuolar protein sorting-associated protein 45 isoform X1
vacuolar protein sorting-associated protein 45 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
DNA repair and recombination protein RAD54-like
leucine-rich repeat-containing protein 47-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: cholesterol transporter ABCA5-like
chymotrypsin-like elastase family member 2A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
piggyBac transposable element-derived protein 3-like
SANT and BTB domain regulator of class switch recombination
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
arginine/serine-rich coiled-coil protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
probable ATP-dependent RNA helicase DDX55 homolog
translation machinery-associated protein 16 homolog
cell division control protein 45 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
required for meiotic nuclear division protein 1 homolog
transfer RNA arginine (anticodon ACG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glycine (anticodon UCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
calcium/calmodulin-dependent protein kinase kinase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
dynein light chain 2, cytoplasmic, transcript variant X1
dynein light chain 2, cytoplasmic, transcript variant X2
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
nose resistant to fluoxetine protein 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial
uncharacterized LOC123663554, transcript variant X2
uncharacterized LOC123663554, transcript variant X1