Melitaea cinxia chromosome 9, ilMelCinx1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Melitaea.
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
REFSEQ INFORMATION: The reference sequence is identical to\nHG992218.1.\nAssembly name: ilMelCinx1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the WELLCOME SANGER INSTITUTE on\n2021/02/16.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: WELLCOME SANGER INSTITUTE\nAssembly Method :: SOAPdenovo v. 1.05; Newbler v. 2.6; MIP\n Scaffolder v. MARCH-2012\nAssembly Name :: MelCinx1.0\nLong Assembly Name :: Melitaea cinxia 1.0\nGenome Coverage :: 70.0x\nSequencing Technology :: Illumina; 454; SOLiD\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Melitaea cinxia Annotation Release\n 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
calcitonin gene-related peptide type 1 receptor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
glucose dehydrogenase [FAD, quinone]-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
ras-related protein M-Ras-like, transcript variant X1
ras-related protein M-Ras-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 38% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
serine/arginine repetitive matrix protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
eukaryotic translation initiation factor 6
uncharacterized LOC123656267, transcript variant X1
uncharacterized LOC123656267, transcript variant X2
uncharacterized protein LOC123656267 isoform X1
uncharacterized protein LOC123656267 isoform X2
ubiquitin carboxyl-terminal hydrolase 30 homolog, transcript variant X1
ubiquitin carboxyl-terminal hydrolase 30 homolog, transcript variant X2
ubiquitin carboxyl-terminal hydrolase 30 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
structural maintenance of chromosomes protein 1A
protein-S-isoprenylcysteine O-methyltransferase
GATA zinc finger domain-containing protein 7
ubiquitin-like modifier-activating enzyme 1
probable ATP-dependent RNA helicase DDX52
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 62 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon UAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 22% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
rRNA N6-adenosine-methyltransferase ZCCHC4
complement component 1 Q subcomponent-binding protein, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123656768, transcript variant X2
uncharacterized LOC123656768, transcript variant X1
SPRY domain-containing SOCS box protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
acyl carrier protein, mitochondrial, transcript variant X3
acyl carrier protein, mitochondrial, transcript variant X1
acyl carrier protein, mitochondrial, transcript variant X2
acyl carrier protein, mitochondrial isoform X3
acyl carrier protein, mitochondrial isoform X1
acyl carrier protein, mitochondrial isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 62% coverage of the annotated genomic feature by RNAseq alignments
Down syndrome cell adhesion molecule-like protein 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
folylpolyglutamate synthase, mitochondrial-like
probable RNA 3'-terminal phosphate cyclase-like protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
lutropin-choriogonadotropic hormone receptor-like
CCR4-NOT transcription complex subunit 3
probable ATP-dependent RNA helicase DDX47
PHD finger-like domain-containing protein 5A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 49% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 60% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
phosphopantothenoylcysteine decarboxylase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
CBP80/20-dependent translation initiation factor, transcript variant X2
CBP80/20-dependent translation initiation factor, transcript variant X1
CBP80/20-dependent translation initiation factor isoform X2
CBP80/20-dependent translation initiation factor isoform X1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog
60S ribosomal protein L27, transcript variant X1
60S ribosomal protein L27, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
atrial natriuretic peptide receptor 1-like
membrane-bound alkaline phosphatase-like
calmodulin-A-like, transcript variant X2
calmodulin-A-like, transcript variant X1
calmodulin-A-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
von Willebrand factor A domain-containing protein 8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
arginine-glutamic acid dipeptide repeats protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
28S ribosomal protein S18a, mitochondrial
ankyrin repeat and zinc finger domain-containing protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF25
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: mitochondrial potassium channel-like
dynein regulatory complex protein 10-like
LOW QUALITY PROTEIN: dynein regulatory complex protein 10-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 33% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
tRNA (uracil-5-)-methyltransferase homolog A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 38% coverage of the annotated genomic feature by RNAseq alignments
cold shock domain-containing protein CG9705
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
target of rapamycin complex subunit lst8, transcript variant X1
target of rapamycin complex subunit lst8
target of rapamycin complex subunit lst8, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 130 samples with support for all annotated introns
ADP-ribosylation factor-binding protein GGA3
LOW QUALITY PROTEIN: protein flightless-1
uncharacterized LOC123656453, transcript variant X1
uncharacterized LOC123656453, transcript variant X2
mitochondrial import receptor subunit TOM22 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
inositol hexakisphosphate kinase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
inositol hexakisphosphate kinase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
histone-lysine N-methyltransferase SETMAR-like
transfer RNA arginine (anticodon UCG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
sec1 family domain-containing protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 78% coverage of the annotated genomic feature by RNAseq alignments
putative CENPB DNA-binding domain-containing protein 1, transcript variant X4
putative CENPB DNA-binding domain-containing protein 1, transcript variant X2
putative CENPB DNA-binding domain-containing protein 1, transcript variant X1
putative CENPB DNA-binding domain-containing protein 1, transcript variant X3
putative CENPB DNA-binding domain-containing protein 1 isoform X1
tigger transposable element-derived protein 1-like isoform X2
cytochrome c oxidase subunit 6A1, mitochondrial-like, transcript variant X2
cytochrome c oxidase subunit 6A1, mitochondrial-like, transcript variant X1
cytochrome c oxidase subunit 6A1, mitochondrial-like isoform X2
cytochrome c oxidase subunit 6A1, mitochondrial-like isoform X1
serine/threonine-protein kinase S6KL-like
translation initiation factor IF-2-like, transcript variant X2
translation initiation factor IF-2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 39% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC123656710, transcript variant X1
uncharacterized LOC123656710, transcript variant X2
uncharacterized protein LOC123656710 isoform X1
uncharacterized protein LOC123656710 isoform X2
methylated-DNA--protein-cysteine methyltransferase, inducible
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
zinc finger HIT domain-containing protein 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
cytochrome c oxidase assembly protein COX19
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 201 samples with support for all annotated introns
cysteine-rich with EGF-like domain protein 2
active breakpoint cluster region-related protein
26S proteasome non-ATPase regulatory subunit 2
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
FGGY carbohydrate kinase domain-containing protein
28S ribosomal protein S36, mitochondrial
uncharacterized LOC123656717, transcript variant X2
uncharacterized LOC123656717, transcript variant X1
uncharacterized protein LOC123656717 isoform X2
uncharacterized protein LOC123656717 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments
cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
THO complex subunit 4, transcript variant X1
THO complex subunit 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
ADP-ribose pyrophosphatase, mitochondrial
translocon-associated protein subunit gamma
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
lysosomal-associated transmembrane protein 4A
ragulator complex protein LAMTOR4 homolog, transcript variant X2
ragulator complex protein LAMTOR4 homolog, transcript variant X1
ragulator complex protein LAMTOR4 homolog
EF-hand domain-containing family member C2-like
uncharacterized LOC123656375, transcript variant X1
uncharacterized LOC123656375, transcript variant X2
uncharacterized protein LOC123656375 isoform X1
uncharacterized protein LOC123656375 isoform X2
ATP-binding cassette sub-family B member 6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 72% coverage of the annotated genomic feature by RNAseq alignments
biogenesis of lysosome-related organelles complex 1 subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETMAR-like
intraflagellar transport protein 22 homolog
protein suppressor of sable, transcript variant X3
protein suppressor of sable, transcript variant X4
protein suppressor of sable, transcript variant X5
protein suppressor of sable, transcript variant X1
protein suppressor of sable, transcript variant X2
protein suppressor of sable, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
DNA-directed RNA polymerase II subunit Rpb4
ubiquitin carboxyl-terminal hydrolase calypso
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
INO80 complex subunit E, transcript variant X1
INO80 complex subunit E, transcript variant X2
trafficking protein particle complex subunit 13
cytoplasmic phosphatidylinositol transfer protein 1
calcium-binding protein E63-1, transcript variant X1
calcium-binding protein E63-1 isoform X1
calcium-binding protein E63-1, transcript variant X3
calcium-binding protein E63-1, transcript variant X2
calcium-binding protein E63-1, transcript variant X4
calcium-binding protein E63-1 isoform X3
calcium-binding protein E63-1 isoform X2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like
putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6
serine--pyruvate aminotransferase, mitochondrial
piggyBac transposable element-derived protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 14% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123656463, transcript variant X1
uncharacterized LOC123656463, transcript variant X2
uncharacterized LOC123656463, transcript variant X3
piggyBac transposable element-derived protein 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
rho guanine nucleotide exchange factor 10-like protein
coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like
coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
tripartite motif-containing protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
ribosome biogenesis protein WDR12 homolog
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: WD repeat-containing protein 75-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 9% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments
sodium channel protein Nach-like, transcript variant X1
sodium channel protein Nach-like, transcript variant X2
sodium channel protein Nach-like isoform X1
sodium channel protein Nach-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68% coverage of the annotated genomic feature by RNAseq alignments
ovarian-specific serine/threonine-protein kinase Lok-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
RNA-binding protein with serine-rich domain 1-A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
NADH-quinone oxidoreductase subunit B 2-like, transcript variant X2
NADH-quinone oxidoreductase subunit B 2-like, transcript variant X3
NADH-quinone oxidoreductase subunit B 2-like, transcript variant X1
NADH-quinone oxidoreductase subunit B 2-like
vitamin K epoxide reductase complex subunit 1
serine/arginine repetitive matrix protein 2
N-terminal Xaa-Pro-Lys N-methyltransferase 1-like
glutaryl-CoA dehydrogenase, mitochondrial
transfer RNA alanine (anticodon AGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: protein singed wings 2
replication protein A 70 kDa DNA-binding subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
conserved oligomeric Golgi complex subunit 8
general transcription factor IIH subunit 2
facilitated trehalose transporter Tret1-like
mediator of RNA polymerase II transcription subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 64% coverage of the annotated genomic feature by RNAseq alignments
charged multivesicular body protein 2b-B
putative phospholipase B-like lamina ancestor
aryl hydrocarbon receptor nuclear translocator-like protein 1
NFX1-type zinc finger-containing protein 1-like
KRR1 small subunit processome component homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
DNA (cytosine-5)-methyltransferase PliMCI-like
TP53-regulated inhibitor of apoptosis 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments
putative inorganic phosphate cotransporter
signal recognition particle receptor subunit beta
pyridoxine/pyridoxamine 5'-phosphate oxidase-like, transcript variant X1
pyridoxine/pyridoxamine 5'-phosphate oxidase-like, transcript variant X2
pyridoxine/pyridoxamine 5'-phosphate oxidase-like
histidine protein methyltransferase 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 34% coverage of the annotated genomic feature by RNAseq alignments
malate dehydrogenase, mitochondrial-like
LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial-like
interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog
probable ATP-dependent DNA helicase HFM1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 13% coverage of the annotated genomic feature by RNAseq alignments
inositol polyphosphate 5-phosphatase K-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA phenylalanine (anticodon GAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
fibronectin type III domain-containing protein 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA threonine (anticodon GGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
putative polypeptide N-acetylgalactosaminyltransferase 9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 52% coverage of the annotated genomic feature by RNAseq alignments
leucine-rich repeat-containing protein 57-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 80% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein LOC123656769 isoform X2
leucine-rich repeat-containing protein 57-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
leucine-rich repeat-containing protein 57-like isoform X1
PAN2-PAN3 deadenylation complex catalytic subunit PAN2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 23% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 40% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 44% coverage of the annotated genomic feature by RNAseq alignments
POU domain, class 6, transcription factor 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
tyrosine-protein phosphatase non-receptor type 4
glycine-rich cell wall structural protein
BMP and activin membrane-bound inhibitor homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
4-hydroxyphenylpyruvate dioxygenase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: zinc finger protein 37 homolog
26S proteasome non-ATPase regulatory subunit 11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
BUB3-interacting and GLEBS motif-containing protein ZNF207
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
DNA-directed RNA polymerase I subunit RPA1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
peroxisomal membrane protein PEX14, transcript variant X3
peroxisomal membrane protein PEX14, transcript variant X1
peroxisomal membrane protein PEX14 isoform X3
peroxisomal membrane protein PEX14 isoform X1
peroxisomal membrane protein PEX14, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
peroxisomal membrane protein PEX14, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
peroxisomal membrane protein PEX14 isoform X4
peroxisomal membrane protein PEX14 isoform X2
uncharacterized LOC123656676, transcript variant X2
uncharacterized LOC123656676, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
calmodulin-binding transcription activator 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
UDP-xylose and UDP-N-acetylglucosamine transporter
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:12.0:RF00619
CTD nuclear envelope phosphatase 1 homolog
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: CTD nuclear envelope phosphatase 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
trifunctional purine biosynthetic protein adenosine-3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
dnaJ homolog subfamily C member 28, transcript variant X2
dnaJ homolog subfamily C member 28 isoform X2
dnaJ homolog subfamily C member 28, transcript variant X1
dnaJ homolog subfamily C member 28 isoform X1
ankyrin repeat domain-containing protein 13D
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
phosphatidylinositol-glycan biosynthesis class X protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
myosin heavy chain, muscle, transcript variant X2
myosin heavy chain, muscle, transcript variant X1
multiple inositol polyphosphate phosphatase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
probable ATP-dependent RNA helicase DDX56
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
transforming growth factor beta-1-induced transcript 1 protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 13% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
nose resistant to fluoxetine protein 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized transporter slc-17.2-like, transcript variant X2
uncharacterized transporter slc-17.2-like, transcript variant X1
uncharacterized transporter slc-17.2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins