Melitaea cinxia chromosome 4, ilMelCinx1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Melitaea.
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
REFSEQ INFORMATION: The reference sequence is identical to\nHG992213.1.\nAssembly name: ilMelCinx1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the WELLCOME SANGER INSTITUTE on\n2021/02/16.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: WELLCOME SANGER INSTITUTE\nAssembly Method :: SOAPdenovo v. 1.05; Newbler v. 2.6; MIP\n Scaffolder v. MARCH-2012\nAssembly Name :: MelCinx1.0\nLong Assembly Name :: Melitaea cinxia 1.0\nGenome Coverage :: 70.0x\nSequencing Technology :: Illumina; 454; SOLiD\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Melitaea cinxia Annotation Release\n 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
COORDINATES: polyA evidence [ECO:0006239]
eukaryotic translation initiation factor 4 gamma 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 13% coverage of the annotated genomic feature by RNAseq alignments
double-strand break repair protein MRE11
transient receptor potential-gamma protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
caseinolytic peptidase B protein homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 89% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein KIAA0930 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
uncharacterized LOC123669989, transcript variant X1
uncharacterized LOC123669989, transcript variant X3
uncharacterized LOC123669989, transcript variant X2
probable phospholipid-transporting ATPase IA
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
cholinephosphotransferase 1, transcript variant X1
cholinephosphotransferase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
3-oxoacyl-[acyl-carrier-protein] reductase FabG-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
ADP-ribosylation factor-like protein 1, transcript variant X1
ADP-ribosylation factor-like protein 1, transcript variant X2
ADP-ribosylation factor-like protein 1 isoform X1
ADP-ribosylation factor-like protein 1 isoform X2
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 38% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
fibrinogen silencer-binding protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC123670006, transcript variant X2
uncharacterized LOC123670006, transcript variant X1
uncharacterized LOC123670006, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 7% coverage of the annotated genomic feature by RNAseq alignments
tyrosine-protein phosphatase non-receptor type 11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
alkylated DNA repair protein alkB homolog 8
phosphatidylinositol N-acetylglucosaminyltransferase subunit A
clathrin light chain, transcript variant X2
clathrin light chain, transcript variant X1
growth arrest and DNA damage-inducible proteins-interacting protein 1
nitric oxide synthase-interacting protein homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ubiquitin carboxyl-terminal hydrolase 46
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 4% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123670500, transcript variant X1
uncharacterized LOC123670500, transcript variant X2
uncharacterized protein LOC123670500 isoform X1
uncharacterized protein LOC123670500 isoform X2
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
low-density lipoprotein receptor-related protein 6
dolichyl-phosphate beta-glucosyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
7-methylguanosine phosphate-specific 5'-nucleotidase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
protein kinase C-binding protein NELL1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
peptidyl-prolyl cis-trans isomerase-like 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
DNA-(apurinic or apyrimidinic site) endonuclease-like
rab proteins geranylgeranyltransferase component A 2
uncharacterized protein DDB_G0287625-like
ornithine decarboxylase 2-like, transcript variant X1
ornithine decarboxylase 2-like, transcript variant X2
post-GPI attachment to proteins factor 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
mitochondrial inner membrane protease subunit 1
histone deacetylase complex subunit SAP30 homolog
high mobility group protein DSP1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 171 samples with support for all annotated introns
high mobility group protein DSP1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123670046, transcript variant X4
uncharacterized LOC123670046, transcript variant X2
uncharacterized LOC123670046, transcript variant X1
uncharacterized LOC123670046, transcript variant X3
uncharacterized protein LOC123670046 isoform X2
uncharacterized protein LOC123670046 isoform X1
uncharacterized LOC123670048, transcript variant X4
uncharacterized LOC123670048, transcript variant X2
uncharacterized LOC123670048, transcript variant X1
uncharacterized LOC123670048, transcript variant X3
uncharacterized protein LOC123670048 isoform X2
uncharacterized protein LOC123670048 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
testis-specific serine/threonine-protein kinase 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
testis-specific serine/threonine-protein kinase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
ER degradation-enhancing alpha-mannosidase-like protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
tumor necrosis factor receptor superfamily member wengen
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 18% coverage of the annotated genomic feature by RNAseq alignments
histone-lysine N-methyltransferase SETMAR-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 2% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 180 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
facilitated trehalose transporter Tret1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
proton-coupled amino acid transporter-like protein pathetic
proton-coupled amino acid transporter-like protein pathetic, transcript variant X1
proton-coupled amino acid transporter-like protein CG1139 isoform X1
proton-coupled amino acid transporter-like protein pathetic, transcript variant X2
proton-coupled amino acid transporter-like protein pathetic isoform X2
NADH-cytochrome b5 reductase 3-like, transcript variant X1
NADH-cytochrome b5 reductase 3-like isoform X1
NADH-cytochrome b5 reductase 3-like, transcript variant X3
NADH-cytochrome b5 reductase 3-like isoform X3
NADH-cytochrome b5 reductase 3-like, transcript variant X2
NADH-cytochrome b5 reductase 3-like isoform X2
protein lin-9 homolog, transcript variant X1
protein lin-9 homolog, transcript variant X3
protein lin-9 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 83% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123670089, transcript variant X2
uncharacterized LOC123670089, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA tyrosine (anticodon GUA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
vacuolar protein-sorting-associated protein 36
vacuolar ATPase assembly integral membrane protein VMA21 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cytosolic carboxypeptidase 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcriptional regulator ovo-like, transcript variant X2
transcriptional regulator ovo-like, transcript variant X1
transcriptional regulator ovo-like isoform X2
transcriptional regulator ovo-like isoform X1
COORDINATES: nucleotide motif:Rfam:12.0:RF00020
LOW QUALITY PROTEIN: odorant receptor 67c-like
TWiK family of potassium channels protein 9-like
cAMP-dependent protein kinase catalytic subunit 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
cAMP-dependent protein kinase catalytic subunit alpha-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 120 Proteins
circadian clock-controlled protein daywake-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 10% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel protein painless
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54% coverage of the annotated genomic feature by RNAseq alignments
single-stranded DNA-binding protein, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
CRAL-TRIO domain-containing protein C3H8.02
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
mediator of RNA polymerase II transcription subunit 7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase-like
vascular endothelial growth factor receptor 1
leucine-rich repeat-containing protein 4B
N-acetylglucosamine-6-phosphate deacetylase
signal recognition particle 9 kDa protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 37% coverage of the annotated genomic feature by RNAseq alignments
tigger transposable element-derived protein 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
60S ribosomal protein L31, transcript variant X1
60S ribosomal protein L31, transcript variant X2
60S ribosomal protein L31, transcript variant X4
60S ribosomal protein L31, transcript variant X3
uncharacterized LOC123670146, transcript variant X1
uncharacterized LOC123670146, transcript variant X2
uncharacterized LOC123670146, transcript variant X3
uncharacterized protein LOC123670146 isoform X1
uncharacterized protein LOC123670146 isoform X2
uncharacterized protein LOC123670146 isoform X3
ras-related and estrogen-regulated growth inhibitor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 58% coverage of the annotated genomic feature by RNAseq alignments
MAP kinase-activating death domain protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
probable 28S ribosomal protein S6, mitochondrial
translation initiation factor eIF-2B subunit epsilon
anaphase-promoting complex subunit 10, transcript variant X2
anaphase-promoting complex subunit 10, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
paired mesoderm homeobox protein 2B-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
paired mesoderm homeobox protein 2B-like
paired mesoderm homeobox protein 2B-like, transcript variant X2
paired mesoderm homeobox protein 2B-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
muscle LIM protein 1-like, transcript variant X2
muscle LIM protein 1-like, transcript variant X1
muscle LIM protein Mlp84B-like isoform X2
DNA repair protein complementing XP-C cells homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
ankyrin repeat and KH domain-containing protein mask
piggyBac transposable element-derived protein 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
protein phosphatase 1 regulatory subunit 36-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 77% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
sterol regulatory element-binding protein 1
uncharacterized LOC123670183, transcript variant X2
uncharacterized LOC123670183, transcript variant X1
suppressor protein SRP40-like, transcript variant X1
suppressor protein SRP40-like, transcript variant X2
suppressor protein SRP40-like isoform X1
lisH domain-containing protein C1711.05-like isoform X2
probable serine/threonine-protein kinase clkA
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
cilia- and flagella-associated protein 99-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
serine/threonine-protein phosphatase rdgC
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
CCR4-NOT transcription complex subunit 7-like
chromatin-remodeling complex ATPase chain Iswi
sodium- and chloride-dependent glycine transporter 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments
39S ribosomal protein L22, mitochondrial
RNA polymerase II subunit A C-terminal domain phosphatase SSU72
coiled-coil domain-containing protein 22 homolog
ER membrane protein complex subunit 10, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
ER membrane protein complex subunit 10, transcript variant X1
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
uncharacterized oxidoreductase YrbE-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
histone-lysine N-methyltransferase KMT5B
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
succinate dehydrogenase assembly factor 2-A, mitochondrial-like
branched-chain-amino-acid aminotransferase, cytosolic
intraflagellar transport protein 88 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
eukaryotic translation initiation factor 3 subunit M
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
heat shock protein 75 kDa, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
ELKS/Rab6-interacting/CAST family member 1-like
40S ribosomal protein S10, transcript variant X1
40S ribosomal protein S10, transcript variant X2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 3% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 58% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: G1/S-specific cyclin-D3
39S ribosomal protein L28, mitochondrial
probable phosphorylase b kinase regulatory subunit alpha
gamma-aminobutyric acid receptor alpha-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
gamma-aminobutyric acid receptor subunit beta-like
low-density lipoprotein receptor-related protein 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
vesicle-associated membrane protein 7-like
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1
uncharacterized LOC123670236, transcript variant X2
uncharacterized LOC123670236, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 67% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog, transcript variant X1
lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog, transcript variant X2
uncharacterized protein LOC123670244 isoform X2
lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1
lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 189 samples with support for all annotated introns
lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog
lipopolysaccharide-induced tumor necrosis factor-alpha factor-like, transcript variant X1
lipopolysaccharide-induced tumor necrosis factor-alpha factor-like, transcript variant X2
lipopolysaccharide-induced tumor necrosis factor-alpha factor-like
uncharacterized LOC123670247, transcript variant X1
uncharacterized LOC123670247, transcript variant X2
50S ribosomal protein L27, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
50S ribosomal protein L27, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 223 samples with support for all annotated introns
39S ribosomal protein L27, mitochondrial isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase SUV3 homolog, mitochondrial
eukaryotic translation initiation factor 5B
retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
uncharacterized LOC123669924, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123669924, transcript variant X2
phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha
heparan-alpha-glucosaminide N-acetyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
cyclic AMP response element-binding protein A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
TBC domain-containing protein kinase-like protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 71% coverage of the annotated genomic feature by RNAseq alignments
putative leucine-rich repeat-containing protein DDB_G0290503
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
trimethyllysine dioxygenase, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
cytochrome P450 CYP12A2-like, transcript variant X1
cytochrome P450 CYP12A2-like, transcript variant X2
probable DNA-directed RNA polymerases I and III subunit RPAC2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 138 samples with support for all annotated introns
uncharacterized LOC123669939, transcript variant X2
uncharacterized LOC123669939, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
mitochondrial import inner membrane translocase subunit Tim8
RNA transcription, translation and transport factor protein
dehydrodolichyl diphosphate synthase complex subunit DHDDS, transcript variant X2
dehydrodolichyl diphosphate synthase complex subunit DHDDS, transcript variant X1
dehydrodolichyl diphosphate synthase complex subunit DHDDS
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
membrane-associated progesterone receptor component 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
probable arginine--tRNA ligase, mitochondrial
WD repeat-containing protein 19, transcript variant X1
WD repeat-containing protein 19 isoform X1
WD repeat-containing protein 19, transcript variant X2
uncharacterized protein LOC123670318 isoform X2
SH3 and multiple ankyrin repeat domains protein 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 76% coverage of the annotated genomic feature by RNAseq alignments
proton-coupled amino acid transporter-like protein CG1139
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
elongation of very long chain fatty acids protein 4-like
MORN repeat-containing protein 4 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
V-type proton ATPase 16 kDa proteolipid subunit
tumor suppressor candidate 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
tumor suppressor candidate 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
protein O-mannosyl-transferase TMTC1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA proline (anticodon AGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 57% coverage of the annotated genomic feature by RNAseq alignments
protein transport protein Sec61 subunit gamma, transcript variant X2
protein transport protein Sec61 subunit gamma, transcript variant X1
protein transport protein Sec61 subunit gamma
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
probable U3 small nucleolar RNA-associated protein 11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
troponin T, skeletal muscle, transcript variant X2
troponin T, skeletal muscle, transcript variant X5
troponin T, skeletal muscle, transcript variant X7
troponin T, skeletal muscle, transcript variant X1
troponin T, skeletal muscle, transcript variant X4
troponin T, skeletal muscle, transcript variant X6
troponin T, skeletal muscle, transcript variant X3
troponin T, skeletal muscle, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins
uncharacterized LOC123670359, transcript variant X2
uncharacterized LOC123670359, transcript variant X1
uncharacterized LOC123670359, transcript variant X3
uncharacterized protein LOC123670359 isoform X1
uncharacterized protein LOC123670359 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 74% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
piggyBac transposable element-derived protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
fat-like cadherin-related tumor suppressor homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments