Mycobacterium marinum E11 plasmid pRAW, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium ulcerans group.
Pathogenic mycobacteria customize their virulence mechanism for intracellular replication in different hosts
Submitted (14-DEC-2013) CBRC, KAUST, 4700 King Abdullah University of Science and Techn, 23955-6900, SAUDI ARABIA
REFSEQ INFORMATION: The reference sequence is identical to\nHG917973.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 13:44:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,416\nCDSs (total) :: 5,359\nGenes (coding) :: 5,219\nCDSs (with protein) :: 5,219\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 140\nCDSs (without protein) :: 140\nPseudo Genes (ambiguous residues) :: 0 of 140\nPseudo Genes (frameshifted) :: 69 of 140\nPseudo Genes (incomplete) :: 93 of 140\nPseudo Genes (internal stop) :: 28 of 140\nPseudo Genes (multiple problems) :: 42 of 140\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014805435.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007172413.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007172412.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013128847.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896032.1
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF022231.2
COORDINATES: protein motif:HMM:NF022280.2
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF013021.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007171784.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012784.2
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024486.2
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007172409.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006901977.1
COORDINATES: similar to AA sequence:RefSeq:WP_020788216.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012552859.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611204.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012296238.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012394851.1
COORDINATES: similar to AA sequence:RefSeq:WP_013809078.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007172295.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011557515.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005057431.1
COORDINATES: similar to AA sequence:RefSeq:WP_007171766.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007171769.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552864.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025398.2
COORDINATES: similar to AA sequence:RefSeq:WP_005069425.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_007170683.1
COORDINATES: similar to AA sequence:RefSeq:WP_007170682.1
COORDINATES: similar to AA sequence:RefSeq:WP_005566945.1
COORDINATES: similar to AA sequence:RefSeq:WP_015297726.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007172348.1
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: similar to AA sequence:RefSeq:WP_007172345.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015575113.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172343.1
COORDINATES: similar to AA sequence:RefSeq:NP_216863.1
COORDINATES: similar to AA sequence:RefSeq:NP_216862.1
COORDINATES: protein motif:HMM:NF025377.2
COORDINATES: similar to AA sequence:RefSeq:WP_007172337.1
type VII secretion integral membrane protein EccD
COORDINATES: similar to AA sequence:RefSeq:WP_014384776.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
type VII secretion-associated serine protease mycosin
COORDINATES: protein motif:HMM:TIGR03923.1
COORDINATES: similar to AA sequence:RefSeq:WP_015355474.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040152.1
COORDINATES: similar to AA sequence:RefSeq:WP_017046212.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_007172330.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172329.1
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_007172321.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011896175.1
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007172307.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172305.1
COORDINATES: similar to AA sequence:RefSeq:WP_006247570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011767739.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612273.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.