Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
Submitted (17-MAY-2018) School of Life Sciences, The Chinese University of Hong Kong, Rm298, South Block, Science Center, Hong Kong 00000, Hong Kong
REFSEQ INFORMATION: The reference sequence is identical to\nCP029453.1.\nBacteria available from Tian Changfu State Key Laboratory of\nAgrobiotechnology College of Biological Sciences China\nAgricultural University, 100193, Beijing, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2015\nAssembly Method :: Celera Assembly v. 8.3\nAssembly Name :: CCBAU 25509\nExpected Final Version :: yes\nGenome Coverage :: 150x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 00:45:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,496\nCDSs (total) :: 6,428\nGenes (coding) :: 6,091\nCDSs (with protein) :: 6,091\nGenes (RNA) :: 68\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 337\nCDSs (without protein) :: 337\nPseudo Genes (ambiguous residues) :: 0 of 337\nPseudo Genes (frameshifted) :: 206 of 337\nPseudo Genes (incomplete) :: 190 of 337\nPseudo Genes (internal stop) :: 32 of 337\nPseudo Genes (multiple problems) :: 80 of 337\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010875046.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014858028.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858027.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858026.1
COORDINATES: similar to AA sequence:RefSeq:WP_017275348.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014332786.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875050.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606126.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014330933.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501092.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501095.1
Site-specific recombinases, DNA invertase Pin homologs
COORDINATES: similar to AA sequence:RefSeq:WP_014330217.1
COORDINATES: similar to AA sequence:RefSeq:WP_012640573.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330935.1
COORDINATES: similar to AA sequence:RefSeq:WP_009798294.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330937.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_017273650.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857769.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875026.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479656.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857766.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007674248.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709013.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611883.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Predicted membrane-associated, metal-dependent hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_015887501.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: similar to AA sequence:RefSeq:WP_018070417.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858087.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014761898.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537129.1
COORDINATES: similar to AA sequence:RefSeq:WP_017275278.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015633370.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330854.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210763.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845298.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531058.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014531059.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650495.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330944.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013953463.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_007503666.1
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_011504797.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012335275.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650718.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612137.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650568.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341928.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048105.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014989420.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
COORDINATES: similar to AA sequence:RefSeq:WP_014857733.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330966.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017491380.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018273724.1
ABC-type amino acid transport system, permease component
COORDINATES: similar to AA sequence:RefSeq:WP_014330968.1
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
COORDINATES: similar to AA sequence:RefSeq:WP_018273722.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014330970.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330972.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330973.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
COORDINATES: similar to AA sequence:RefSeq:WP_018273720.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273721.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611730.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012706351.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330979.1
GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]
GO:0016567 - protein ubiquitination [Evidence IEA]
NEL-type E3 ubiquitin ligase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003523548.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019197490.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857718.1
COORDINATES: similar to AA sequence:RefSeq:WP_014497925.1
COORDINATES: similar to AA sequence:RefSeq:WP_011510441.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749525.1
COORDINATES: similar to AA sequence:RefSeq:WP_011971054.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010711.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011907855.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875204.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488953.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633424.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004860.0
COORDINATES: similar to AA sequence:RefSeq:WP_019860319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875266.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_010875265.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875264.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558830.1
COORDINATES: similar to AA sequence:RefSeq:WP_014328799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875263.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967560.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601864.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611261.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559675.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516793.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341813.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857789.1
COORDINATES: similar to AA sequence:RefSeq:WP_014327878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015934064.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970797.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761245.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_014989244.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875351.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875353.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014858052.1
COORDINATES: similar to AA sequence:RefSeq:WP_020817899.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533378.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875355.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913829.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875357.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
ABC-type multidrug transport system, ATPase component
COORDINATES: similar to AA sequence:RefSeq:WP_015633486.1
nodulation factor ABC transporter ATP-binding protein NodI
ABC-type multidrug transport system, permease component
COORDINATES: similar to AA sequence:RefSeq:WP_010875359.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636983.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004265661.1
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007753860.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997470.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018098881.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006204698.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_008838317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605890.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_026312707.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084944.1
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
COORDINATES: similar to AA sequence:RefSeq:WP_015633476.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_076611821.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970904.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003584387.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270940.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858092.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327668.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328351.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636077.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858094.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875345.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858081.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913673.1
COORDINATES: similar to AA sequence:RefSeq:WP_014526622.1
COORDINATES: protein motif:HMM:NF012946.2
COORDINATES: similar to AA sequence:RefSeq:WP_011084703.1
COORDINATES: protein motif:HMM:NF021530.2
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_043767036.1
COORDINATES: protein motif:HMM:NF018755.2
COORDINATES: similar to AA sequence:RefSeq:WP_014857771.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612306.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875340.1
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857747.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857746.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857744.1
COORDINATES: protein motif:HMM:NF018596.2
COORDINATES: similar to AA sequence:RefSeq:WP_010967842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012756396.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555941.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857678.1
radical SAM family RiPP maturation amino acid epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_014857677.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126055.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_014857675.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
ABC-type oligopeptide transport system,periplasmic component
COORDINATES: similar to AA sequence:RefSeq:WP_014766591.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331162.1
involved in the transport of C4-dicarboxylates across the membrane; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015887115.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857667.1
COORDINATES: protein motif:HMM:NF016999.2
GO:0010468 - regulation of gene expression [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857663.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857660.1
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857659.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875165.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_015633448.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_018517503.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532765.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558441.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875160.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857651.1
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857650.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857649.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857648.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_014857647.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875154.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857644.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003532774.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014857642.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_010913612.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_016737533.1
GO:0051540 - metal cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913614.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875147.1
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010875146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014764555.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240251.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875144.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857631.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875142.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857627.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875140.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014857619.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755361.1
COORDINATES: similar to AA sequence:RefSeq:WP_014421489.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236702.1
COORDINATES: similar to AA sequence:RefSeq:WP_017277652.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827581.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017267339.1
COORDINATES: similar to AA sequence:RefSeq:WP_017266263.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857614.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857613.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611752.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: protein motif:HMM:NF025189.2
COORDINATES: similar to AA sequence:RefSeq:WP_003527383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857607.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633385.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857603.1
COORDINATES: similar to AA sequence:RefSeq:WP_020051287.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_003520574.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875082.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875083.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875084.1
COORDINATES: protein motif:HMM:NF014699.2
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: similar to AA sequence:RefSeq:WP_010875085.1
GO:0004311 - farnesyltranstransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015687465.1
GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875087.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875088.1
GO:0051007 - squalene-hopene cyclase activity [Evidence IEA]
GO:0019746 - hopanoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012330260.1
catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018097467.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857586.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536583.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330918.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760358.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706575.1
COORDINATES: protein motif:HMM:NF016674.2
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004119772.1
Molecular chaperone (small heat shock protein)
COORDINATES: similar to AA sequence:RefSeq:WP_018237628.1
COORDINATES: similar to AA sequence:RefSeq:WP_017276605.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493252.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017264700.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014330279.1
COORDINATES: protein motif:HMM:NF017934.2
COORDINATES: similar to AA sequence:RefSeq:WP_015886709.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661793.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Transposase and inactivated derivatives, TnpA family
COORDINATES: similar to AA sequence:RefSeq:WP_020326821.1
COORDINATES: protein motif:HMM:NF015505.2
GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]
YopT-type cysteine protease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014528085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857579.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875211.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875060.1
IS21-like element ISRsp2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012708757.1
IS21-like element ISRsp2 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_015633401.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875094.1
GO:0009306 - protein secretion [Evidence IEA]
type III secretion system export apparatus subunit SctV
COORDINATES: similar to AA sequence:RefSeq:WP_014857572.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875097.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875098.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857567.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857566.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system export apparatus subunit SctT
COORDINATES: similar to AA sequence:RefSeq:WP_014857565.1
EscS/YscS/HrcS family type III secretion system export apparatus protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857564.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_010875103.1
type III secretion system cytoplasmic ring protein SctQ
COORDINATES: similar to AA sequence:RefSeq:WP_014857562.1
Flagellar biosynthesis/type III secretory pathway ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_010875105.1
GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633406.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875108.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875110.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875111.1
type II secretion system effector nodulation protein NopX
COORDINATES: similar to AA sequence:RefSeq:WP_014857553.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875113.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857549.1
NAD/NADP octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857548.1
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014857547.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875118.1
type II secretion system effector nodulation protein NopL
COORDINATES: similar to AA sequence:RefSeq:WP_014857545.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857544.1
type II and III secretion system protein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875121.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014857541.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875122.1
COORDINATES: similar to AA sequence:RefSeq:WP_003601684.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537795.1
COORDINATES: protein motif:HMM:NF016693.2
COORDINATES: similar to AA sequence:RefSeq:WP_010875125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875126.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875127.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533497.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240696.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706579.1
COORDINATES: protein motif:HMM:NF022517.2
COORDINATES: similar to AA sequence:RefSeq:WP_012336521.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012607043.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976703.1
COORDINATES: similar to AA sequence:RefSeq:WP_071831742.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875417.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875418.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875419.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875420.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_020048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875424.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_014858036.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018210390.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858033.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858030.1