Pseudorhizobium banfieldiae strain NT-26 plasmid NT26_p2, complete sequence.
type: Entry
definition: Pseudorhizobium banfieldiae strain NT-26 plasmid NT26_p2, complete sequence.
sequence version: NZ_FO082822.1
sequence date: 2023-04-25
sequence: sequence
division: CON
label: NZ_FO082822.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA3283108
keyword: RefSeq
source: Pseudorhizobium banfieldiae
organism: Pseudorhizobium banfieldiae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Pseudorhizobium.
reference: 1
references: 23589360
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nFO082822.1.\nAnnotation results relative to BLAST similarities, COG\nassignations, enzymatic function prediction (PRIAM software), TMHMM\nand SignalP predictions, and synteny conservation (Syntonizer\nsoftware) are available in the MicroScope annotation system\nhttp://www.genoscope.cns.fr/agc/microscope.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/25/2023 03:25:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,475\nCDSs (total) :: 4,412\nGenes (coding) :: 4,356\nCDSs (with protein) :: 4,356\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 24 of 56\nPseudo Genes (incomplete) :: 40 of 56\nPseudo Genes (internal stop) :: 6 of 56\nPseudo Genes (multiple problems) :: 11 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15430
topology: circular
so has quality: SO_0000988
location: 1..15430
location: region:1-15430:1
RO_0002162: 1125847

NZ_FO082822
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA3283108
type: BioSample
SIO_000068: biosample

1
title: Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26
author: Andres, J.
author: Arsene-Ploetze, F.
author: Barbe, V.
author: Brochier-Armanet, C.
author: Cleiss-Arnold, J.
author: Coppee, J.Y.
author: Dillies, M.A.
author: Geist, L.
author: Joublin, A.
author: Koechler, S.
author: Lassalle, F.
author: Marchal, M.
author: Medigue, C.
author: Muller, D.
author: Nesme, X.
author: Plewniak, F.
author: Proux, C.
author: Ramirez-Bahena, M.H.
author: Schenowitz, C.
author: Sismeiro, O.
author: Vallenet, D.
author: Santini, J.M.
author: Bertin, P.N.
journal: Genome Biol Evol
volume: 5
issue: 5
pages: 934-953
year: 2013
pubmed: 23589360

23589360
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Genoscope -, C.E.A.
journal: Submitted (15-DEC-2011) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15430:1
position: 15430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15430:1:source
so part of: sequence
organism: Pseudorhizobium banfieldiae
mol type: genomic DNA
strain: NT-26
type material: type strain of Pseudorhizobium banfieldiae
plasmid: NT26_p2

1125847
type: Taxonomy
SIO_000068: taxonomy

NT26_RS22050
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22050
so part of: sequence
location: complement(join(15330..15430,1..196))
location: region:1-15430:-1
so has part: feature:1-196:-1:exon
so has part: feature:15330-15430:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15430:-1
position: 15430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-196:-1:exon

position:196:-1
position: 196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15330-15430:-1:exon

position:15330:-1
position: 15330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NT26_RS22050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017502934.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARKSIEQRIVELEEQKRSLKARLGKQERARDTRRKVLLGALVLHRLEDDKDEEFSRRLREWLKRELPGFLTRDMDKALFDDLMQDTPANAGRQTGNE
SIO_010081: NT26_RS22050
subclass of: SO_0000673
so part of: NT26_RS22050
location: complement(join(15330..15430,1..196))
location: region:1-15430:-1
so has part: feature:1-196:-1:exon
so has part: feature:15330-15430:-1:exon

WP_052643030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-196:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15330-15430:-1:exon

NT26_RS22055
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
gene: traA
locus tag: NT26_RS22055
old locus tag: NT26_p20001
so part of: sequence
location: 398..4054
location: region:398-4054:1
so has part: feature:398-4054:1:exon
subclass of: SO_0000010

position:398:1
position: 398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4054:1
position: 4054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398-4054:1:exon

NT26_RS22055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
gene: traA
locus tag: NT26_RS22055
old locus tag: NT26_p20001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014330832.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MAIYHASMKPVPRSSGRSAVAAAAYRSGDRLTNERDGRTHDFLRKQGIAHAEIVLPEGVSEDWALDRSKLWNAAEAAESRKDARVAREFEIALPHELDAEQRLELARDFAGELANRYGAAVDVAIHEPHGETDIRNHHAHLLMTTRTVGAGGLGEKTHIERKNEWLLSNGLPTSHMQLRDIRQTWELCANRHLERAGLDVRIDHRSHSERGLEIAPTEHMGVHATQVQRRGGDVSRGRLDKESAERNAELIRERPEQVLAVISREKSVFDRHDIARALHRYLDGDAQTFQNAFSSVMASKALVELEPAGEGTLARYSTREMVEVEGRMAEAAVQMADEKSYRVEPRHVERAMAGQDAAIRSSVANVTAEKVEVGELDRAEADRMIGAARLSDEQRAAIAHVTGAERIAAVVGFAGAGKSTMLAAAREAWERQGYRVHGAALAGKATEGLEESSGIQSRTLASWEYSWRADRGKLGRGDVLVIDEAGMIDSRQLARFILEAQRTGAKIVLVGDHEQLQAIGAGAAFRAVIEQIGAAELTDIRRQREDWQRAASVALATNRTAEGFAAYAERGHVRILETKDEARAFIVGDYMADRAAHPDGTRVALAHRRADVRALNGDIRSLLQGTGELARGEDAGEVTFQTNDGKRAFAPGDRIVFLENDRDLGVKNGMLGTVERVEADKPDASPRLVAVLDGKERAVSVPVDRYRAFDHGYATTIHKSQGATVDRAFVMASSTMDRHMTYVAMTRHREGVQLYGSQDEFAARPGAGSMANAGARAGMLIAHGKAPYENQPGNRESYFVAVQTASGQKNTVWGADLERAMREAAPAIGTQIGFEHKGAETVRLPDGRTAERNSWSVLNVQDLALKQMESRLSRSGAKETTLDYAAAFAERRGLAERMGVRSEIEIPRNVQARTEDPGRKEPAQDLGAHTLTPGNGGARGELRQGENAGEQERGQPAPLVPAITDHARSIEDVAREKATPAFEHHWQSIERLAKEVYTDPGAVTDRMRSAITHEGRDETSLSKTLARQPEQFGELRGKSGLFGANAERKNALKRAEAMSSHLDGAGKTWTRRFAEEKEAEQWRRDRNDRVQIPGLTPRSETLLKQLDQIKDAKARTSFVDQLEKAADGKQAIDEAKCIAKAMQSRFGSSDHRDIDKGLDRTRSQLPEIAKDVDRIKEVARITNRARETVIRRDYALERAQQQKLDMQRGRTRDRGLER
SIO_010081: NT26_RS22055
subclass of: SO_0000673
so part of: NT26_RS22055
location: 398..4054
location: region:398-4054:1
so has part: feature:398-4054:1:exon

WP_052643033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:398-4054:1:exon

NT26_RS23315
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS23315
so part of: sequence
location: complement(4297..4425)
location: region:4297-4425:-1
so has part: feature:4297-4425:-1:exon
subclass of: SO_0000010

position:4297:-1
position: 4297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4425:-1
position: 4425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4297-4425:-1:exon

NT26_RS23315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS23315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRNAGPLRRWTTSKLLDEMWGEPSGDFSQTDIEAIDLGKPR
SIO_010081: NT26_RS23315
subclass of: SO_0000673
so part of: NT26_RS23315
location: complement(4297..4425)
location: region:4297-4425:-1
so has part: feature:4297-4425:-1:exon

WP_280136238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4297-4425:-1:exon

NT26_RS22060
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22060
old locus tag: NT26_p20003
pseudo: true
so part of: sequence
location: complement(<4502..4714)
location: region:4502-4714:-1
so has part: feature:4502-4714:-1:exon
subclass of: SO_0000010

position:4502:-1
position: 4502
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4714:-1
position: 4714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4502-4714:-1:exon

NT26_RS22060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22060
old locus tag: NT26_p20003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007693123.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: arsenate reductase
SIO_010081: NT26_RS22060
subclass of: SO_0000673
so part of: NT26_RS22060
location: complement(<4502..4714)
location: region:4502-4714:-1
so has part: feature:4502-4714:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4502-4714:-1:exon

NT26_RS23220
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS23220
pseudo: true
so part of: sequence
location: complement(4722..>4877)
location: region:4722-4877:-1
so has part: feature:4722-4877:-1:exon
subclass of: SO_0000010

position:4722:-1
position: 4722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4877:-1
position: 4877
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4722-4877:-1:exon

NT26_RS23220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS23220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012561214.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: arsenate reductase ArsC
SIO_010081: NT26_RS23220
subclass of: SO_0000673
so part of: NT26_RS23220
location: complement(4722..>4877)
location: region:4722-4877:-1
so has part: feature:4722-4877:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4722-4877:-1:exon

NT26_RS22065
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22065
old locus tag: NT26_p20004
so part of: sequence
location: complement(4910..5266)
location: region:4910-5266:-1
so has part: feature:4910-5266:-1:exon
subclass of: SO_0000010

position:4910:-1
position: 4910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5266:-1
position: 5266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4910-5266:-1:exon

NT26_RS22065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22065
old locus tag: NT26_p20004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014131920.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MDGKQAIGAFAALSQETRLRIVRLLVTAGPEGLPAGAIGEAMGASSSRLSFHLSHLENAGLVESRREGRSIIYSAIYPALSGLVEFLMRDCCQDHPEVCQPAFAALSCCASVESDAHV
SIO_010081: NT26_RS22065
subclass of: SO_0000673
so part of: NT26_RS22065
location: complement(4910..5266)
location: region:4910-5266:-1
so has part: feature:4910-5266:-1:exon

WP_052642997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4910-5266:-1:exon

NT26_RS22070
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22070
old locus tag: NT26_p20005
so part of: sequence
location: complement(5344..6630)
location: region:5344-6630:-1
so has part: feature:5344-6630:-1:exon
subclass of: SO_0000010

position:5344:-1
position: 5344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6630:-1
position: 6630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5344-6630:-1:exon

NT26_RS22070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22070
old locus tag: NT26_p20005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011285818.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: multidrug effflux MFS transporter
translation: MTTPPPARDEESGAVRRQPGTRRLTLLLGSYTMLGPFSISTYMPFFPALMAAMGATQAEIQQTLSVYTFAFGFMMLLHGPLADAFGRRAVVLTGLSVYAAASIGGALTTSLVLLMLARTLQGLSVGAGSIVGRAVIRDRLEGAEAQRLLSQVTMIFGLAPAIAPVFGGWLAEWFPWPSVFGFLALFALLQLVATWFYLPETLPPEQRTSVEPAELARTYRTVLGSKPFWLLSLALSGNFAGFFLYVSSAPWFIIEHLGLEQNQFGWLFIPAMSGVIFGSYLSSRVAKRLQRPTTVRWGYGVMFAAVVLNLAYNRFLPPEVPWAVLPVALYTTGMSLAMPSITLLTLDLFPRLRGTAASTQGFLQTMVMTFTSAVLAPLLGASGMKMAIGLTCLALSGYLAWLAYERLLAAPTVQARPEPESVLTPPEP
SIO_010081: NT26_RS22070
subclass of: SO_0000673
so part of: NT26_RS22070
location: complement(5344..6630)
location: region:5344-6630:-1
so has part: feature:5344-6630:-1:exon

WP_065814619.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5344-6630:-1:exon

NT26_RS22075
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22075
old locus tag: NT26_p20006
so part of: sequence
location: complement(6724..6954)
location: region:6724-6954:-1
so has part: feature:6724-6954:-1:exon
subclass of: SO_0000010

position:6724:-1
position: 6724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6954:-1
position: 6954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6724-6954:-1:exon

NT26_RS22075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22075
old locus tag: NT26_p20006
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHSAVPEDQISPLEELILKAFRRALSDEQSDVAEHLLRALETLQPNLAPGSSVANAYRAIADRTINGGVVSRRLR
SIO_010081: NT26_RS22075
subclass of: SO_0000673
so part of: NT26_RS22075
location: complement(6724..6954)
location: region:6724-6954:-1
so has part: feature:6724-6954:-1:exon

WP_052643003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6724-6954:-1:exon

NT26_RS22080
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22080
old locus tag: NT26_p20007
so part of: sequence
location: complement(7278..7730)
location: region:7278-7730:-1
so has part: feature:7278-7730:-1:exon
subclass of: SO_0000010

position:7278:-1
position: 7278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7730:-1
position: 7730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7278-7730:-1:exon

NT26_RS22080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22080
old locus tag: NT26_p20007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009866299.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MRDLTIGKAAKKAGVGVETIRFYERRGLIEQPRKPGSTGFRLYPADTVQRIRFIKRAQELGFSLREVEELLSLRTDPSSDCGNVRAAAMVKVKEVEQKTKELKQIRAALHAIIDACPGQGDIGTCTILEALHAIQNGQSERSRSPHRAKE
SIO_010081: NT26_RS22080
subclass of: SO_0000673
so part of: NT26_RS22080
location: complement(7278..7730)
location: region:7278-7730:-1
so has part: feature:7278-7730:-1:exon

WP_052643006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7278-7730:-1:exon

NT26_RS22085
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22085
old locus tag: NT26_p20008
so part of: sequence
location: 7987..8820
location: region:7987-8820:1
so has part: feature:7987-8820:1:exon
subclass of: SO_0000010

position:7987:1
position: 7987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8820:1
position: 8820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7987-8820:1:exon

NT26_RS22085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22085
old locus tag: NT26_p20008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015101917.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arginase family protein
translation: MKLDITVSQGRVADKVSGVNEGAARIGRALERRYGATGQFIGRAALPARDDWRVSLSQARNTLDGLSSAIAASVAAGNLPVMVANTCAASLASLPIAAREYPDAVVLWIDAHGDFNTPATTDTGYLGGMVLSAACGLWDSGHGAGLRSENVVLIGARDIDQAEGELLQDACVRVIPPKEVTPETVMAAIAGARVWIHLDWDALEPGFVPADYKVPGGMTPAQLRVIFEAIPSAQLAGIELAEFQAGTDDEADERAVSIILDTIAPLLERGRDGAVRA
SIO_010081: NT26_RS22085
subclass of: SO_0000673
so part of: NT26_RS22085
location: 7987..8820
location: region:7987-8820:1
so has part: feature:7987-8820:1:exon

WP_244467758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7987-8820:1:exon

NT26_RS22090
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22090
old locus tag: NT26_p20009
so part of: sequence
location: 8817..9392
location: region:8817-9392:1
so has part: feature:8817-9392:1:exon
subclass of: SO_0000010

position:8817:1
position: 8817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9392:1
position: 9392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8817-9392:1:exon

NT26_RS22090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22090
old locus tag: NT26_p20009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007424977.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSGTVLIGYARVSTRGQNLDQQRAALGAAGCARIFEEKASGAKRDRPELARMLDHLRAGDVVTITRFDRLARSTGDLLNIAERIKEAGAGLRSLAEPWADTTTPAGRMVLTVFAGIADFERSLIVERTSAGRIAAKARGVRFGPSPALSAEQIAHARQLINEEKKPVAEVARLLGVHRATLYRALDGTAAV
SIO_010081: NT26_RS22090
subclass of: SO_0000673
so part of: NT26_RS22090
location: 8817..9392
location: region:8817-9392:1
so has part: feature:8817-9392:1:exon

WP_052643012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8817-9392:1:exon

NT26_RS22095
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22095
so part of: sequence
location: 9488..9676
location: region:9488-9676:1
so has part: feature:9488-9676:1:exon
subclass of: SO_0000010

position:9488:1
position: 9488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9676:1
position: 9676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9488-9676:1:exon

NT26_RS22095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014330841.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MKEKVAAHRERLKAAGRIYVNTDLPADLVARLDQIKEAMGASSRAPIIEEALRFYIENAPRA
SIO_010081: NT26_RS22095
subclass of: SO_0000673
so part of: NT26_RS22095
location: 9488..9676
location: region:9488-9676:1
so has part: feature:9488-9676:1:exon

WP_244467759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9488-9676:1:exon

NT26_RS22100
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22100
old locus tag: NT26_p20010
so part of: sequence
location: 9870..10742
location: region:9870-10742:1
so has part: feature:9870-10742:1:exon
subclass of: SO_0000010

position:9870:1
position: 9870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10742:1
position: 10742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9870-10742:1:exon

NT26_RS22100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22100
old locus tag: NT26_p20010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661812.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRTQIAAAIGCARGHALDEIMREVWTRHGAGQLNEAEAEQLSALAYARRAALQRSGQAALGLVMPPPAERERTPVRRQSHFKGRSEGRIWRPTTRQETQKVLLAAKRYELAERQKGKRSGPLGAVAIEVLEYFVNLVDFRTGRLDPSLDTIMGKVRRSRDAVVRALKALRAHGFLDWLRRYEPTGNESGPQVQQASNAYRLSLPERALRFLERFGKAPPPPDDHVQAEAERKAVMEAHRASLDVGERVMFDVGDNALGQALARLGKSLQKRESAKQTESPPSSILYGKT
SIO_010081: NT26_RS22100
subclass of: SO_0000673
so part of: NT26_RS22100
location: 9870..10742
location: region:9870-10742:1
so has part: feature:9870-10742:1:exon

WP_052643018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9870-10742:1:exon

NT26_RS22105
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22105
old locus tag: NT26_p20011
so part of: sequence
location: 11034..11705
location: region:11034-11705:1
so has part: feature:11034-11705:1:exon
subclass of: SO_0000010

position:11034:1
position: 11034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11705:1
position: 11705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11034-11705:1:exon

NT26_RS22105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22105
old locus tag: NT26_p20011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013845951.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVISLVSSKGGVGKTTSAVVLAGEFAAAGRKVVLVDADPNRPLEAWARLRALPETMRVVTDDSAETIIDTIEDARAGADFVIVDLEGTATDRIGFAVARSDLVLIPLQSSVLDAAEAAKSVKLVRQMWKVANREIPYRAFYTRVPPAIRERTARDIERQFSDAEIPTLPATLIDRAAYRALFSLGGTLHELESADVSGLNGARENARNFAQTVINTLRGGAA
SIO_010081: NT26_RS22105
subclass of: SO_0000673
so part of: NT26_RS22105
location: 11034..11705
location: region:11034-11705:1
so has part: feature:11034-11705:1:exon

WP_052643021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11034-11705:1:exon

NT26_RS22110
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22110
old locus tag: NT26_p20012
so part of: sequence
location: 11702..12028
location: region:11702-12028:1
so has part: feature:11702-12028:1:exon
subclass of: SO_0000010

position:11702:1
position: 11702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12028:1
position: 12028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11702-12028:1:exon

NT26_RS22110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22110
old locus tag: NT26_p20012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018009491.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGDDKKRATLDFGDLPTTPAPAVDPKAVKEATRAAGFRETPKAAAPATPASTGRRTRRRTGRTEQFATRLRAETLEAIYAYADRHEITLAETIERAMSALVDAESRA
SIO_010081: NT26_RS22110
subclass of: SO_0000673
so part of: NT26_RS22110
location: 11702..12028
location: region:11702-12028:1
so has part: feature:11702-12028:1:exon

WP_052643024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11702-12028:1:exon

NT26_RS22115
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22115
old locus tag: NT26_p20013
so part of: sequence
location: 12084..12344
location: region:12084-12344:1
so has part: feature:12084-12344:1:exon
subclass of: SO_0000010

position:12084:1
position: 12084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12344:1
position: 12344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12084-12344:1:exon

NT26_RS22115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22115
old locus tag: NT26_p20013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017441598.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MRVDTVVRARVDAETKDSATKALAEMGLSVSDYIRMALVRVARDKAIPFPVKAPNAKTAAAMEKTARGEDVHKAKDADDLFKQLDI
SIO_010081: NT26_RS22115
subclass of: SO_0000673
so part of: NT26_RS22115
location: 12084..12344
location: region:12084-12344:1
so has part: feature:12084-12344:1:exon

WP_052643037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12084-12344:1:exon

NT26_RS22120
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22120
old locus tag: NT26_p20014
so part of: sequence
location: 12345..12617
location: region:12345-12617:1
so has part: feature:12345-12617:1:exon
subclass of: SO_0000010

position:12345:1
position: 12345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12617:1
position: 12617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12345-12617:1:exon

NT26_RS22120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22120
old locus tag: NT26_p20014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010103055.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
translation: MREPSYSGQFRRDVKRAEKRGKDMAKLRHVLQLLIEGQPLPAQLRDHPLKSNWIGYRDLHIEPDWLLIYKADATSVHFERTGTHSDLFRK
SIO_010081: NT26_RS22120
subclass of: SO_0000673
so part of: NT26_RS22120
location: 12345..12617
location: region:12345-12617:1
so has part: feature:12345-12617:1:exon

WP_052643027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12345-12617:1:exon

NT26_RS22125
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS22125
old locus tag: NT26_p20015
so part of: sequence
location: complement(12736..13257)
location: region:12736-13257:-1
so has part: feature:12736-13257:-1:exon
subclass of: SO_0000010

position:12736:-1
position: 12736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13257:-1
position: 13257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12736-13257:-1:exon

NT26_RS22125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS22125
old locus tag: NT26_p20015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIGKASLLDGEAVTIAGCRFAGATLWTDYALAGELAEMQAPTGELIAMADGQASRPFTLADSAAAHATAKAQMASIIEDDQDPLPLVVVTHHAPHPGCLPLDVHGTWAAGNCASDLSELTDSGKVALWVHGHIHASIDMTRPNGTRPVQSSRADVLKSPLEESLVVEVETQR
SIO_010081: NT26_RS22125
subclass of: SO_0000673
so part of: NT26_RS22125
location: complement(12736..13257)
location: region:12736-13257:-1
so has part: feature:12736-13257:-1:exon

WP_065814620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12736-13257:-1:exon

NT26_RS23225
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS23225
pseudo: true
so part of: sequence
location: complement(<13283..13432)
location: region:13283-13432:-1
so has part: feature:13283-13432:-1:exon
subclass of: SO_0000010

position:13283:-1
position: 13283
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:13432:-1
position: 13432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13283-13432:-1:exon

NT26_RS23225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS23225
inference: COORDINATES: protein motif:HMM:NF012376.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: metallophosphoesterase
SIO_010081: NT26_RS23225
subclass of: SO_0000673
so part of: NT26_RS23225
location: complement(<13283..13432)
location: region:13283-13432:-1
so has part: feature:13283-13432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13283-13432:-1:exon

NT26_RS23320
type: Gene
subclass of: SO_0000704
RO_0002162: 1125847
locus tag: NT26_RS23320
pseudo: true
so part of: sequence
location: complement(13578..>14988)
location: region:13578-14988:-1
so has part: feature:13578-14988:-1:exon
subclass of: SO_0000010

position:13578:-1
position: 13578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14988:-1
position: 14988
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13578-14988:-1:exon

NT26_RS23320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1125847
locus tag: NT26_RS23320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020808815.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
SIO_010081: NT26_RS23320
subclass of: SO_0000673
so part of: NT26_RS23320
location: complement(13578..>14988)
location: region:13578-14988:-1
so has part: feature:13578-14988:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13578-14988:-1:exon