Chryseobacterium joostei strain DSM 16927 plasmid unnamed, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium.
Proposal to divide the Flavobacteriaceae and reorganize its genera based on Amino Acid Identity values calculated from whole genome sequences
Submitted (09-NOV-2018) Bacterial Special Pathogens Branch, Centers for Disease Control, 1600 Clifton Road, Atlanta, GA 30329, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP033927.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: N/A (de novo assembly)\nGenome Coverage :: 118.99x\nSequencing Technology :: PacBio & Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 01:14:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,513\nCDSs (total) :: 4,402\nGenes (coding) :: 4,383\nCDSs (with protein) :: 4,383\nGenes (RNA) :: 111\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 3\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 7 of 19\nPseudo Genes (incomplete) :: 12 of 19\nPseudo Genes (internal stop) :: 5 of 19\nPseudo Genes (multiple problems) :: 5 of 19\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015397.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007843045.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024390.2
COORDINATES: protein motif:HMM:NF024982.2
COORDINATES: protein motif:HMM:NF023922.2
COORDINATES: protein motif:HMM:TIGR03783.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein