Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM170, al1l pseudoknot.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Aurantimonadaceae; Martelella.
Foreign affairs: Plasmid Transfer between Roseobacters and Rhizobia
Submitted (15-MAR-2017) Roseobacter Plasmids, Leibniz-Institute DSMZ, Inhoffenstrasse 7B, Braunschweig 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP020333.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nAssembly Name :: MartelellaDSM17316_HGAP3_2SC\nGenome Coverage :: 140x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 05:39:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,309\nCDSs (total) :: 5,251\nGenes (coding) :: 5,127\nCDSs (with protein) :: 5,127\nGenes (RNA) :: 58\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 124\nCDSs (without protein) :: 124\nPseudo Genes (ambiguous residues) :: 0 of 124\nPseudo Genes (frameshifted) :: 48 of 124\nPseudo Genes (incomplete) :: 91 of 124\nPseudo Genes (internal stop) :: 19 of 124\nPseudo Genes (multiple problems) :: 34 of 124\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013959840.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007010061.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654975.1
COORDINATES: similar to AA sequence:RefSeq:WP_005665262.1
COORDINATES: protein motif:HMM:NF020157.2
COORDINATES: similar to AA sequence:RefSeq:WP_007634435.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012755578.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003501256.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501674.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209835.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526806.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851101.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012650505.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025314.2
COORDINATES: similar to AA sequence:RefSeq:WP_010969728.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: similar to AA sequence:RefSeq:WP_009601637.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01843.1
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007690360.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011690445.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018774366.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067151.1
COORDINATES: protein motif:HMM:NF019845.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012086798.1
COORDINATES: similar to AA sequence:RefSeq:WP_009288399.1
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]; GO:0019516 - lactate oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018064088.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: similar to AA sequence:RefSeq:WP_009491270.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007759116.1
D-galactonate dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018855675.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855674.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493320.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855672.1
COORDINATES: similar to AA sequence:RefSeq:WP_018182751.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_013390768.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989802.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989803.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011048361.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989805.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989806.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014989807.1
COORDINATES: similar to AA sequence:RefSeq:WP_015895521.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014989809.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_008926892.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_005153515.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011408759.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010894527.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076612098.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011969919.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517387.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_007885360.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012178085.1
COORDINATES: similar to AA sequence:RefSeq:WP_002540629.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496019.1
COORDINATES: similar to AA sequence:RefSeq:WP_007199012.1
COORDINATES: similar to AA sequence:RefSeq:WP_011969920.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005981106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496008.1
COORDINATES: similar to AA sequence:RefSeq:WP_008562047.1
COORDINATES: similar to AA sequence:RefSeq:WP_018301257.1
COORDINATES: protein motif:HMM:NF014376.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017989510.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498161.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498163.1
COORDINATES: similar to AA sequence:RefSeq:WP_003225145.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498167.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537810.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009502467.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066719.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018330155.1
COORDINATES: similar to AA sequence:RefSeq:WP_018687718.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590977.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015242288.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011649649.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957217.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533750.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967093.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006699843.1
COORDINATES: similar to AA sequence:RefSeq:WP_017961080.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957210.1
COORDINATES: similar to AA sequence:RefSeq:WP_014151848.1
COORDINATES: similar to AA sequence:RefSeq:WP_013574889.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533721.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367746.1
COORDINATES: similar to AA sequence:RefSeq:WP_003482184.1
COORDINATES: similar to AA sequence:RefSeq:WP_006334371.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003533708.1
COORDINATES: protein motif:HMM:NF013791.2
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007875961.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007439228.1
COORDINATES: protein motif:HMM:NF020037.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:TIGR01414.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009489415.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593566.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007757646.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
sugar isomerase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018859982.1
COORDINATES: similar to AA sequence:RefSeq:WP_018183567.1
neutral/alkaline non-lysosomal ceramidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009489410.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758434.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859977.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859976.1
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018326090.1
COORDINATES: similar to AA sequence:RefSeq:WP_010142271.1
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008958892.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007800788.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121106.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019016699.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016697.1
COORDINATES: similar to AA sequence:RefSeq:WP_007002338.1
COORDINATES: similar to AA sequence:RefSeq:WP_005016655.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_020039125.1
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_019096239.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653491.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611844.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018066699.1
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012742.2
COORDINATES: similar to AA sequence:RefSeq:WP_018438182.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_017202772.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931418.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343817.1
COORDINATES: similar to AA sequence:RefSeq:WP_006728223.1
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018116625.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008546919.1
COORDINATES: similar to AA sequence:RefSeq:WP_018116623.1
COORDINATES: similar to AA sequence:RefSeq:WP_018857925.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257075.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257074.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242927.1