Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 plasmid unnamed, partial sequence.
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Megalodesulfovibrio.
Roles of HynAB and Ech, the only two hydrogenases found in the model sulfate reducer Desulfovibrio gigas
Submitted (02-JUL-2013) Genomics and Stress, Instituto de Tecnologia Quimica e Biologica Antonio Xavier - UNL, Avenida da Republica, Estacao Agronomica Nacional, Oeiras, Oeiras 2780-157, Portugal
REFSEQ INFORMATION: The reference sequence is identical to\nCP006586.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet version v. 1.2.09; Phred version\n 0.020425.c; Phrap version 0.990319; Consed\n version 24; CISA Newbler v. 2.6; Abyss\n 1.3.5\nGenome Coverage :: 160x\nSequencing Technology :: Sanger; 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 15:08:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,410\nCDSs (total) :: 3,354\nGenes (coding) :: 3,318\nCDSs (with protein) :: 3,318\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 5\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 5 of 36\nPseudo Genes (incomplete) :: 30 of 36\nPseudo Genes (internal stop) :: 3 of 36\nPseudo Genes (multiple problems) :: 2 of 36\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: not full length.
COORDINATES: protein motif:HMM:NF019575.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:TIGR02532.1
COORDINATES: protein motif:HMM:NF015867.2
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02517.1
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015335802.1
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF019846.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013513071.1
COORDINATES: similar to AA sequence:RefSeq:WP_009105620.1
COORDINATES: similar to AA sequence:RefSeq:WP_004091417.1
COORDINATES: protein motif:HMM:NF003950.0
GO:0008690 - 3-deoxy-manno-octulosonate cytidylyltransferase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
3-deoxy-manno-octulosonate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009849326.1
GO:0008676 - 3-deoxy-8-phosphooctulonate synthase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018123539.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
KpsF/GutQ family sugar-phosphate isomerase
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_015775448.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015664007.1
COORDINATES: similar to AA sequence:RefSeq:WP_011368669.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR01536.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF016908.2
COORDINATES: similar to AA sequence:RefSeq:WP_015664002.1
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_005030761.1
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: protein motif:HMM:NF025665.2
glycoside hydrolase family 99-like domain-containing protein
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_020041592.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: protein motif:HMM:NF016493.2
COORDINATES: similar to AA sequence:RefSeq:WP_008871220.1
bifunctional sulfate adenylyltransferase/adenylylsulfate kinase
COORDINATES: similar to AA sequence:RefSeq:WP_009856519.1
COORDINATES: protein motif:HMM:NF037279.2
WcbI family polysaccharide biosynthesis putative acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019864348.1
COORDINATES: protein motif:HMM:NF017011.2
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: protein motif:HMM:NF020243.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_020396423.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_012734746.1
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: similar to AA sequence:RefSeq:WP_009105682.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009105684.1
GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]
N-acetylneuraminate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014323183.1
COORDINATES: similar to AA sequence:RefSeq:WP_015946196.1
COORDINATES: similar to AA sequence:RefSeq:WP_013514819.1
COORDINATES: similar to AA sequence:RefSeq:WP_015860949.1
COORDINATES: similar to AA sequence:RefSeq:WP_020589792.1
type II secretion system major pseudopilin GspG