Clostridium felsineum DSM 794 plasmid p19, complete sequence.
type: Entry
definition: Clostridium felsineum DSM 794 plasmid p19, complete sequence.
sequence version: NZ_CP096982.1
sequence date: 2023-06-14
sequence: sequence
division: CON
label: NZ_CP096982.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05170511
keyword: RefSeq
source: Clostridium felsineum DSM 794
organism: Clostridium felsineum DSM 794
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP096982.1.\nBacteria and source DNA available from DSMZ Braunschweig.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2022\nAssembly Method :: Unicycler v. 0.4.7\nAssembly Name :: CLFE\nGenome Coverage :: 140\nSequencing Technology :: Illumina MiSeq;Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/14/2023 05:49:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,859\nCDSs (total) :: 4,741\nGenes (coding) :: 4,690\nCDSs (with protein) :: 4,690\nGenes (RNA) :: 118\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 80\nncRNAs :: 5\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 14 of 51\nPseudo Genes (incomplete) :: 39 of 51\nPseudo Genes (internal stop) :: 10 of 51\nPseudo Genes (multiple problems) :: 10 of 51\nCRISPR Arrays :: 13\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19726
topology: circular
so has quality: SO_0000988
location: 1..19726
location: region:1-19726:1
RO_0002162: 1121310

NZ_CP096982
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05170511
type: BioSample
SIO_000068: biosample

1
title: Closed genome seqeunce of Clostriidum felsineum DSM 794
author: Poehlein, A.
author: Schoch, T.
author: Duerre, P.
author: Daniel, R.
journal: Unpublished

2
title: Direct Submission
author: Poehlein, A.
author: Schoch, T.
author: Durre, P.
author: Daniel, R.
journal: Submitted (28-APR-2022) Genomic and Applied Microbiology & Goettingen Genomics, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany

3
title: Direct Submission
author: Poehlein, A.
author: Montoya Solano, J.D.
author: Flitsch, S.
author: Krabben, P.
author: Duerre, P.
author: Daniel, R.
journal: Submitted (27-MAY-2016) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19726:1
position: 19726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19726:1:source
so part of: sequence
organism: Clostridium felsineum DSM 794
mol type: genomic DNA
strain: DSM 794
culture collection: DSM:794
type material: type strain of Clostridium felsineum
plasmid: p19

1121310
type: Taxonomy
SIO_000068: taxonomy

CLFE_RS24130
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24130
old locus tag: CLFE_048570
so part of: sequence
location: 617..2410
location: region:617-2410:1
so has part: feature:617-2410:1:exon
subclass of: SO_0000010

position:617:1
position: 617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2410:1
position: 2410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617-2410:1:exon

CLFE_RS24130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24130
old locus tag: CLFE_048570
inference: COORDINATES: protein motif:HMM:NF022062.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AIPR family protein
translation: MLVSNIQESINVYINDNVESLSNTVAIGNSFSEWCLYNLFNLREDEVVSACEISGKYDNGIDAIFEISDILYVFQFKYNSAHSLDSLIRFKHDCERLLNKEPITDRDIVKEKCAIIRDRYAQNKIIECYYITNKVYTEQENGQIKDIRDIDSNVKIHYWDVNNMIDKIEEVSGRLPKEFRGKRINLILSKSFETDGTTIVGMTSLSNFATFIKKGGNLLFHSNIRNYLSKTKVNKGIEKTLETCPDKFWYYNNGVTIVCEEYTPSGSVYSLIEPQIVNGCQTAKSILSYFTGKSDKESQDKGLKGNLLIKIIRTKKSNTEHEKKELRDNITRYTNSQNAVRGLDFYALDEFQRSLQKRFEQIGYYYEIQRGAFISLKKNVRSKYKGIKEYDYLVTKKFRGVLPAKEIIQAYTAGVKQLPNVAYGKADELTPLGSKWDDICNEKTITTPLELFLFPFLILKYIKNNLGYKAGANDFRKSASLLFVTCYFMTFVEIMQKITNQQYEFIEDIDIEILKKIFREKSINKELVNLTHSIIDNFLTDSKIEDDYIQDNINTFLKSLDKSKSECWYILNKKIKKYINGESKLIQEISTLLVENE
SIO_010081: CLFE_RS24130
subclass of: SO_0000673
so part of: CLFE_RS24130
location: 617..2410
location: region:617-2410:1
so has part: feature:617-2410:1:exon

WP_250944836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:617-2410:1:exon

CLFE_RS24135
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24135
old locus tag: CLFE_048580
so part of: sequence
location: 2503..3051
location: region:2503-3051:1
so has part: feature:2503-3051:1:exon
subclass of: SO_0000010

position:2503:1
position: 2503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3051:1
position: 3051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2503-3051:1:exon

CLFE_RS24135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24135
old locus tag: CLFE_048580
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNLFNSKKKIIIGVIFLCVILIGGSIGGYEYISIQKHKEYESAFTKTTLDVMGQTVICEQMIEVFSTKWSTAIDDGEDFNNAISEVQQGFKDDGTLNKVNNNKAKIEKEMIKLQNPPKDYEKAYNLFVELYSKYGQIYSQATSPTGSLTTYNEDTNSKSSEFNEIYDKLAVLRPEIKSNKK
SIO_010081: CLFE_RS24135
subclass of: SO_0000673
so part of: CLFE_RS24135
location: 2503..3051
location: region:2503-3051:1
so has part: feature:2503-3051:1:exon

WP_077894598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2503-3051:1:exon

CLFE_RS24140
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24140
old locus tag: CLFE_048590
pseudo: true
so part of: sequence
location: <3396..3779
location: region:3396-3779:1
so has part: feature:3396-3779:1:exon
subclass of: SO_0000010

position:3396:1
position: 3396
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:3779:1
position: 3779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3396-3779:1:exon

CLFE_RS24140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24140
old locus tag: CLFE_048590
inference: COORDINATES: protein motif:HMM:NF024754.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: 3'-5' exonuclease
SIO_010081: CLFE_RS24140
subclass of: SO_0000673
so part of: CLFE_RS24140
location: <3396..3779
location: region:3396-3779:1
so has part: feature:3396-3779:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3396-3779:1:exon

CLFE_RS24145
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24145
old locus tag: CLFE_048600
so part of: sequence
location: 3845..4804
location: region:3845-4804:1
so has part: feature:3845-4804:1:exon
subclass of: SO_0000010

position:3845:1
position: 3845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4804:1
position: 4804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3845-4804:1:exon

CLFE_RS24145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24145
old locus tag: CLFE_048600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013238315.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MGSKKLINVRKSTQKSISELYKEYLNYCISIGQTDGTIVSKTSYFKFTLNKIVNVEGNISTFTQDKLEKHIIMMRKNKYSSNYIQGVVIKSKAFLTWCFNHQYIEKFKIKIPQATQKKKTVYTEEELKKLLKKPNLKTCLVGTYKNWVTVNTLLGTGCRAETLLNILVKDVDFINSTILFRHMKMHKQISVPLSPTLSSVLREYIQLLDFKQDDFLFPKLNKKKMSYDTLHQNISIFCKHRNIQMRGINTFRNTFATLFIKNGNNNIYLLQKLLGHSDIRMTERYINLLPCQMAEDINKYNPLDVLNQQRLSIKRGGKQ
SIO_010081: CLFE_RS24145
subclass of: SO_0000673
so part of: CLFE_RS24145
location: 3845..4804
location: region:3845-4804:1
so has part: feature:3845-4804:1:exon

WP_077894613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3845-4804:1:exon

CLFE_RS24150
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24150
old locus tag: CLFE_048610
so part of: sequence
location: 4804..4989
location: region:4804-4989:1
so has part: feature:4804-4989:1:exon
subclass of: SO_0000010

position:4989:1
position: 4989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4804-4989:1:exon

CLFE_RS24150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24150
old locus tag: CLFE_048610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDEQKELFRIYCDLQSEEFKEEIIDYESLKMVDVQYAIKVNFTWGWLRVYKKKNNGIEWY
SIO_010081: CLFE_RS24150
subclass of: SO_0000673
so part of: CLFE_RS24150
location: 4804..4989
location: region:4804-4989:1
so has part: feature:4804-4989:1:exon

WP_077894612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4804-4989:1:exon

CLFE_RS24155
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24155
old locus tag: CLFE_048620
so part of: sequence
location: 5004..5420
location: region:5004-5420:1
so has part: feature:5004-5420:1:exon
subclass of: SO_0000010

position:5004:1
position: 5004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5420:1
position: 5420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5004-5420:1:exon

CLFE_RS24155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24155
old locus tag: CLFE_048620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010241589.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNGNFTIIKNKDITSSLTNGAFRLYVLLESYCYGNSKNTCYPSQLTLGEKLNRSVRTIQRYLKELESKGYVAKKRRGSTSNIYKMLKKVIQQKIEKSINSAKNAYNKYKKKIDNFNDYSQREYDYKDLEKKLTSWQFE
SIO_010081: CLFE_RS24155
subclass of: SO_0000673
so part of: CLFE_RS24155
location: 5004..5420
location: region:5004-5420:1
so has part: feature:5004-5420:1:exon

WP_077894611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5004-5420:1:exon

CLFE_RS24160
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24160
old locus tag: CLFE_048630
so part of: sequence
location: 5927..6700
location: region:5927-6700:1
so has part: feature:5927-6700:1:exon
subclass of: SO_0000010

position:5927:1
position: 5927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6700:1
position: 6700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6700:1:exon

CLFE_RS24160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24160
old locus tag: CLFE_048630
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIEEKCTKEEYSYCKTCKESISNLKTYRISDSAIVFAEYEYIRQFLVESYGKADFRLFLKDKCIIEPCFVVWEHELYKSMFHNKHMSYTEYINYEYGLFKLLIDNYGLLIDRGNLLMKTIEKNQKIVEKSINKQVGKSFGNVMFERKLMDNNIQFKSEKTFEGCKDKKALRFDFYLQDLNEVVEIDGLQHKKVVEYFGGKLGYLDRVKKDKIKNNYCENNKIKITRIVYDPNKIEQYNHSLDIKINQILKECKKGRD
SIO_010081: CLFE_RS24160
subclass of: SO_0000673
so part of: CLFE_RS24160
location: 5927..6700
location: region:5927-6700:1
so has part: feature:5927-6700:1:exon

WP_077894610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6700:1:exon

CLFE_RS24165
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24165
old locus tag: CLFE_048640
so part of: sequence
location: complement(6701..6922)
location: region:6701-6922:-1
so has part: feature:6701-6922:-1:exon
subclass of: SO_0000010

position:6701:-1
position: 6701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6922:-1
position: 6922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6701-6922:-1:exon

CLFE_RS24165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24165
old locus tag: CLFE_048640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003366523.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MPIKIKIEEVLEKKGRTIYWLAKEIGITYKSMHNICKNRTTSIQFSILEKTCEALNCNLSDIIELQKSYKVEK
SIO_010081: CLFE_RS24165
subclass of: SO_0000673
so part of: CLFE_RS24165
location: complement(6701..6922)
location: region:6701-6922:-1
so has part: feature:6701-6922:-1:exon

WP_242951683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6701-6922:-1:exon

CLFE_RS24170
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24170
old locus tag: CLFE_048650
so part of: sequence
location: 7132..7476
location: region:7132-7476:1
so has part: feature:7132-7476:1:exon
subclass of: SO_0000010

position:7132:1
position: 7132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7476:1
position: 7476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7132-7476:1:exon

CLFE_RS24170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24170
old locus tag: CLFE_048650
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKVNNFRTFRDVLLDEDKKIGIYMAKKHYTKPIKCMMARNFLLYKRTSNKEENFNYTDLTKNNLEDIFLQSLTNQDVYYIEECMKINNWTIKTLYNEVKIRGCNVLQVVGCPK
SIO_010081: CLFE_RS24170
subclass of: SO_0000673
so part of: CLFE_RS24170
location: 7132..7476
location: region:7132-7476:1
so has part: feature:7132-7476:1:exon

WP_077894609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7132-7476:1:exon

CLFE_RS24175
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24175
old locus tag: CLFE_048660
so part of: sequence
location: 7473..8099
location: region:7473-8099:1
so has part: feature:7473-8099:1:exon
subclass of: SO_0000010

position:7473:1
position: 7473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8099:1
position: 8099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7473-8099:1:exon

CLFE_RS24175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24175
old locus tag: CLFE_048660
inference: COORDINATES: protein motif:HMM:NF025637.2
GO function: GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease
translation: MRKYTSRESSMIKNLKKEKPHICYYCRKFITNEEELTVDHKTPLSRGGLTVPDNLVIACKDCNLEKDSMTEDEYYVYLEVKKELGNYNFIIITKINNLLKEQEKILDMYRDLHEEKRLLNYKKMKVLKMITTEHFNAARGYMLARELQNYSLKLIRLDEELIHETSMEELAKYNIMQLNTQKREIFKKLIEAYKNKDEKFKILLKKAM
SIO_010081: CLFE_RS24175
subclass of: SO_0000673
so part of: CLFE_RS24175
location: 7473..8099
location: region:7473-8099:1
so has part: feature:7473-8099:1:exon

WP_077894608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7473-8099:1:exon

CLFE_RS24180
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24180
old locus tag: CLFE_048670
so part of: sequence
location: 8116..8655
location: region:8116-8655:1
so has part: feature:8116-8655:1:exon
subclass of: SO_0000010

position:8116:1
position: 8116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8655:1
position: 8655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8116-8655:1:exon

CLFE_RS24180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24180
old locus tag: CLFE_048670
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFTNEMMEYEDIREHLIDLEAKEQYVQAIKETKSFLKKLKSRGIKGYNRYFAYYQFSRYYFQLNRLEMALTNIKKAEFYCIRPEFQYNNYAVEANIYEQLGEYNKAIRLYNRCLVYYKSISLHQTYAVMMANIGHLEGNAIMIQRAINVFKKCENTWNYNNILNEMKNYLHETITKVS
SIO_010081: CLFE_RS24180
subclass of: SO_0000673
so part of: CLFE_RS24180
location: 8116..8655
location: region:8116-8655:1
so has part: feature:8116-8655:1:exon

WP_077894607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8116-8655:1:exon

CLFE_RS24185
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24185
old locus tag: CLFE_048690
so part of: sequence
location: 10073..10267
location: region:10073-10267:1
so has part: feature:10073-10267:1:exon
subclass of: SO_0000010

position:10073:1
position: 10073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10267:1
position: 10267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10073-10267:1:exon

CLFE_RS24185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24185
old locus tag: CLFE_048690
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADHVRENQRIKVKNSYIIVKSFRKLNNAGEIFITEKGVVKYEGFKIGGKIPIPAFRDERFPNA
SIO_010081: CLFE_RS24185
subclass of: SO_0000673
so part of: CLFE_RS24185
location: 10073..10267
location: region:10073-10267:1
so has part: feature:10073-10267:1:exon

WP_077894606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10073-10267:1:exon

CLFE_RS24190
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24190
old locus tag: CLFE_048700
so part of: sequence
location: 11033..11854
location: region:11033-11854:1
so has part: feature:11033-11854:1:exon
subclass of: SO_0000010

position:11033:1
position: 11033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11854:1
position: 11854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11033-11854:1:exon

CLFE_RS24190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24190
old locus tag: CLFE_048700
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKEYKEKFPNWTKDNKKYYMCLTDDLDSLFSCILLNKIKGYKISHFYSFNSLYRLSSYKNNSKIIAIDMETNIGKAWSNHVNNVHNCNAANLNVIDRIDENTYFKKYSGSTLLQIISYYNWDISSLTEEARMILLAIDSTYLGYYLKQYPLPQVANKHYLCDILDLKELYKLQENHTKEDFEKLQKKYNLKKKIFVNEEGKLKTSIDLKALSKIFRFEFRLTEESFEPIKIFKKAGVNTKDYTYLAEKLERNGHKIFTQAQTNKNFIKLSYY
SIO_010081: CLFE_RS24190
subclass of: SO_0000673
so part of: CLFE_RS24190
location: 11033..11854
location: region:11033-11854:1
so has part: feature:11033-11854:1:exon

WP_077894605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11033-11854:1:exon

CLFE_RS24195
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24195
old locus tag: CLFE_048710
so part of: sequence
location: 11916..14351
location: region:11916-14351:1
so has part: feature:11916-14351:1:exon
subclass of: SO_0000010

position:11916:1
position: 11916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14351:1
position: 14351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11916-14351:1:exon

CLFE_RS24195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24195
old locus tag: CLFE_048710
inference: COORDINATES: protein motif:HMM:NF019126.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tail fiber protein
translation: MSTEVDQIQFKRGNLNDLNTLLDGEPAVIEDKQNGSLYFGTKNGNRRTLNEQDLSDINGNINNVVNTATTAMNNSGIALSNSNQALDKSNQALSTVDTANTNASQAVTTADQALNTANTVNNKMDANDVWVNYDDNTTYYNYNKVVDMGSSYICLVDNVKGQAPHLDSTNTYWRLIASKGKDGAGTGDMSTSTYDINNNGIVDNSERLGGQLPNYYVSKATKLGINNLITNGDFSRGVIPNSSTNPENWGLWGGSSIFSGQGQTNYNLPNTIYLTHGTSPSGITSNNLNLKPNTTYTIAFSYGTEGNINYNYNAIDFYDTNGNQISSPNTVFNYDLSKADTIQSFTFTTPSSFARSVFDSNASSISPDGAFLTRLGNVMLVEGDYIPSDYSKSFGDLSQIFAPNGYGLGTSGVRLTKGTDLKTIYANGWYDVEAGADVGGLGWAKLLVICSGDTNYITQLLFSMTDSTNQMWIRQKTSGIWSNWQEIARLDGVMPRFQNRQAIGNMNNLTSAGIYALGGITTNAPTNGGSSQWGTVIVTVSGDVVSQLVLGYEDDIYYRSYSQGVGWRNWISIKDSSAYAPSGYGLGTYATDITGQDLNNYKVTGFYRGRNCINAPNNSDWFYIQTIGHDGMSWAQQIAWDFYGDVMCTRRLANGTWQNWIMVQNNNDAGKIDFFSTTTIPDGYLKADGSSVNRTTYDKLFTAIGTYYGSGDGSTTFNIPDLRGLVPRGLDLGRGIDVDRTLGSYQADQSQTHHHTQTGKFTTQTYENGNGYKYVAGESVADDVIYTGNNESVNSSETRMKNMALIACIKY
SIO_010081: CLFE_RS24195
subclass of: SO_0000673
so part of: CLFE_RS24195
location: 11916..14351
location: region:11916-14351:1
so has part: feature:11916-14351:1:exon

WP_169850992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11916-14351:1:exon

CLFE_RS24200
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24200
old locus tag: CLFE_048720
so part of: sequence
location: 14379..15128
location: region:14379-15128:1
so has part: feature:14379-15128:1:exon
subclass of: SO_0000010

position:14379:1
position: 14379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15128:1
position: 15128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14379-15128:1:exon

CLFE_RS24200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24200
old locus tag: CLFE_048720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIYNYSYLTYEYLSTSDATEDPLEKGRYLIPAYATDIQPPEYEKNQTPIFNVGTKVWNVVDDYRNQNGCEIDKNVYFIRQHLFTLGEKPSSTLILASLPNTSLLKPKWDSTNNQWVDDLNAVKQNKCQQIENKCKQMLTSGFVSTAYQNISKTYSSTLENQSNIQGNAISAMSKIAGTPGCENDKFYYHAQGEEFVEWTAQEVLTLARDWKVFKEQQLFKSKSLQTYVNDVLTTVDSVKSVTWDTEMV
SIO_010081: CLFE_RS24200
subclass of: SO_0000673
so part of: CLFE_RS24200
location: 14379..15128
location: region:14379-15128:1
so has part: feature:14379-15128:1:exon

WP_077894603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14379-15128:1:exon

CLFE_RS24205
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24205
old locus tag: CLFE_048730
so part of: sequence
location: 15225..15395
location: region:15225-15395:1
so has part: feature:15225-15395:1:exon
subclass of: SO_0000010

position:15225:1
position: 15225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15395:1
position: 15395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15225-15395:1:exon

CLFE_RS24205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24205
old locus tag: CLFE_048730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003442440.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKEEKYYIIKKKYLADALSFLGFRYYKFNNVNYSFINTNKFREALTSLTDLKKRFK
SIO_010081: CLFE_RS24205
subclass of: SO_0000673
so part of: CLFE_RS24205
location: 15225..15395
location: region:15225-15395:1
so has part: feature:15225-15395:1:exon

WP_169850991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15225-15395:1:exon

CLFE_RS24210
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24210
old locus tag: CLFE_048740
so part of: sequence
location: 15427..16896
location: region:15427-16896:1
so has part: feature:15427-16896:1:exon
subclass of: SO_0000010

position:15427:1
position: 15427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16896:1
position: 16896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15427-16896:1:exon

CLFE_RS24210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24210
old locus tag: CLFE_048740
inference: COORDINATES: protein motif:HMM:NF016724.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase family protein
translation: MKKFIDTIIKEEYKQWGSGDRILINSGTGTGKSTFIKRKLNNYAYETNKKILYLTNRNTLRNQILNDLQEHNNITVLNYQKIEEFILKNVSLDNFDYIVCDEAHYFFTDAVFNRKTDLFFNMLIENVFSIVIFMTATPLLLINYMKKSYKEFDYTYKLDTDYTYIKKVVAYTNDESVESIIENIPEDEQIMFFSTAKKSLEIAKKYKGTFICSKYNKNYNKYVSNTENEKELDNIIKNGCFNNHLLCTTTFMDCGVNIKESTAVKHIILDILDIDSFIQCLGRKRIADGEKINLYFNSYKNKGRINGFRKKVSNTLEIANYLIENGQEKFVEHKFKSDRFADGRIIDEYIKDGNTIKVVNKCMYQKVLYDYNFYETLLNKTINISFIDIVANRLRINRGDITELEVTEKTLSVGDVLESLVGKKIYKKEKKELINFIGLKDSKGRLQKSIGQINEYLKSNNIPYIILSKVVKNNNKCIRVWIVDKLILQ
SIO_010081: CLFE_RS24210
subclass of: SO_0000673
so part of: CLFE_RS24210
location: 15427..16896
location: region:15427-16896:1
so has part: feature:15427-16896:1:exon

WP_077894602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15427-16896:1:exon

CLFE_RS24215
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24215
old locus tag: CLFE_048750
so part of: sequence
location: 17457..18830
location: region:17457-18830:1
so has part: feature:17457-18830:1:exon
subclass of: SO_0000010

position:17457:1
position: 17457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18830:1
position: 18830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17457-18830:1:exon

CLFE_RS24215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24215
old locus tag: CLFE_048750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013411768.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease
translation: MKKKITELDLIKKHFYIHMKYGICKYSNSCDFKDGNTKSYIFDLARHKCFCLEKEELVDLRDTDEFPSIKLVLSSENNRTNWREVVGKAEAQDKIKRALLEIELYKNILISGLNNIKNVSEEYLKLTNIDNKEIEKITSTILNNSIYPEKFHKKIDIQYDENSKVIIINYMLPNSEEIPKTIKYTYDKIFDKLNGVTMKAKDFNNYYESVIFQITLRTIKETFTINKREKVKSIVFNGMVEDIDRKTGNNFSSCIISVMASREDFEKINLEQVSPKDCIMFLKGIFANSLHKLAPVKPIMDISRKDRRFIYNKEVLSKLNEGVNLAEMNWEDFEYLVRELFEKIFSNDGSEVRVTQASRDGGVDAIAFDTDPIKGGKFIIQAKRYNNVVPVSAVRDLYGTVINEGAIKGILVTTSYFGNDSREFSKDKPITLVDGANVVYLLNKYGYKTYIELKKSN
SIO_010081: CLFE_RS24215
subclass of: SO_0000673
so part of: CLFE_RS24215
location: 17457..18830
location: region:17457-18830:1
so has part: feature:17457-18830:1:exon

WP_077894601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17457-18830:1:exon

CLFE_RS24220
type: Gene
subclass of: SO_0000704
RO_0002162: 1121310
locus tag: CLFE_RS24220
old locus tag: CLFE_048760
so part of: sequence
location: 19046..19714
location: region:19046-19714:1
so has part: feature:19046-19714:1:exon
subclass of: SO_0000010

position:19046:1
position: 19046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19714:1
position: 19714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19046-19714:1:exon

CLFE_RS24220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1121310
locus tag: CLFE_RS24220
old locus tag: CLFE_048760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016298682.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGNYYSYMRISTKESTDKQSFNRQEKSLKAYETNNDIEYLLRFKDDCSGSTFNRPEWIKLEKLLHEGDTIVFKEISRFTRQAEEGYKKYMQLMNKGINLIFIDNMTVSTDYIKNLTKVADEQDLVTRTALESTIKLLLIVELDRVQKEREIIVKRIKQGIEASVKKSGRRFNSLDKMNDNLKKDINLFLKDRSIKQIDLINKYNISRNTLKKYIKIVEQEGK
SIO_010081: CLFE_RS24220
subclass of: SO_0000673
so part of: CLFE_RS24220
location: 19046..19714
location: region:19046-19714:1
so has part: feature:19046-19714:1:exon

WP_077894600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19046-19714:1:exon