Mannheimia pernigra strain 16CN0041 plasmid pMP2, complete sequence.
type: Entry
definition: Mannheimia pernigra strain 16CN0041 plasmid pMP2, complete sequence.
sequence version: NZ_CP055304.1
sequence date: 2023-02-13
sequence: sequence
division: CON
label: NZ_CP055304.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15211747
keyword: RefSeq
source: Mannheimia pernigra
organism: Mannheimia pernigra
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP055304.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 418x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 10:51:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,274\nCDSs (total) :: 2,183\nGenes (coding) :: 2,139\nCDSs (with protein) :: 2,139\nGenes (RNA) :: 91\nrRNAs :: 8, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 6, 6 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 15 of 44\nPseudo Genes (incomplete) :: 29 of 44\nPseudo Genes (internal stop) :: 6 of 44\nPseudo Genes (multiple problems) :: 6 of 44\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 10005
topology: circular
so has quality: SO_0000988
location: 1..10005
location: region:1-10005:1
RO_0002162: 111844

NZ_CP055304
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15211747
type: BioSample
SIO_000068: biosample

1
title: Mannheimia pernigra sp. nov. isolated from bovine respiratory tract
author: Kuhnert, P.
author: Akarsu-Egger, H.
journal: Unpublished

2
title: Direct Submission
author: Kuhnert, P.
author: Akarsu-Egger, H.
journal: Submitted (15-JUN-2020) Institute of Veterinary Bacteriology, University of Bern, Laenggassstr. 122, Bern 3012, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10005:1
position: 10005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10005:1:source
so part of: sequence
organism: Mannheimia pernigra
mol type: genomic DNA
strain: 16CN0041
isolation source: upper respiratory tract
host: cattle
plasmid: pMP2
country: Switzerland
collection date: 2017-10-21

111844
type: Taxonomy
SIO_000068: taxonomy

HV561_RS11255
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
gene: sul2
locus tag: HV561_RS11255
old locus tag: HV561_11250
so part of: sequence
location: 153..968
location: region:153-968:1
so has part: feature:153-968:1:exon
subclass of: SO_0000010

position:153:1
position: 153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:968:1
position: 968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153-968:1:exon

HV561_RS11255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
gene: sul2
locus tag: HV561_RS11255
old locus tag: HV561_11250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfonamide-resistant dihydropteroate synthase Sul2
translation: MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR
SIO_010081: HV561_RS11255
subclass of: SO_0000673
so part of: HV561_RS11255
location: 153..968
location: region:153-968:1
so has part: feature:153-968:1:exon

WP_001043260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:153-968:1:exon

HV561_RS11260
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11260
old locus tag: HV561_11255
so part of: sequence
location: 1035..1676
location: region:1035-1676:1
so has part: feature:1035-1676:1:exon
subclass of: SO_0000010

position:1035:1
position: 1035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1676:1
position: 1676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1035-1676:1:exon

HV561_RS11260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11260
old locus tag: HV561_11255
EC number: 2.3.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005826111.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type A-3 chloramphenicol O-acetyltransferase CatIII
translation: MNYTKFDVKNWVRREHFEFYRHRLPCGFSLTSKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFISRLQELCNSKLK
SIO_010081: HV561_RS11260
subclass of: SO_0000673
so part of: HV561_RS11260
location: 1035..1676
location: region:1035-1676:1
so has part: feature:1035-1676:1:exon

WP_005826111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1035-1676:1:exon

HV561_RS11265
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
gene: aph(3'')-Ib
locus tag: HV561_RS11265
old locus tag: HV561_11260
so part of: sequence
location: 1746..2549
location: region:1746-2549:1
so has part: feature:1746-2549:1:exon
subclass of: SO_0000010

position:1746:1
position: 1746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2549:1
position: 2549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1746-2549:1:exon

HV561_RS11265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
gene: aph(3'')-Ib
locus tag: HV561_RS11265
old locus tag: HV561_11260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(3'')-Ib
translation: MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
SIO_010081: HV561_RS11265
subclass of: SO_0000673
so part of: HV561_RS11265
location: 1746..2549
location: region:1746-2549:1
so has part: feature:1746-2549:1:exon

WP_001082319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1746-2549:1:exon

HV561_RS11515
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11515
pseudo: true
so part of: sequence
location: 2549..>2647
location: region:2549-2647:1
so has part: feature:2549-2647:1:exon
subclass of: SO_0000010

position:2647:1
position: 2647
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2549-2647:1:exon

HV561_RS11515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
GO function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO:0019748 - secondary metabolic process [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: aminoglycoside phosphotransferase family protein
SIO_010081: HV561_RS11515
subclass of: SO_0000673
so part of: HV561_RS11515
location: 2549..>2647
location: region:2549-2647:1
so has part: feature:2549-2647:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2549-2647:1:exon

HV561_RS11270
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11270
old locus tag: HV561_11265
so part of: sequence
location: 3547..3852
location: region:3547-3852:1
so has part: feature:3547-3852:1:exon
subclass of: SO_0000010

position:3547:1
position: 3547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3852:1
position: 3852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3547-3852:1:exon

HV561_RS11270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11270
old locus tag: HV561_11265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005618548.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MKREKEIKIRLTENEYQALLERKTKARLAEWVREIALEQQPNRQPKVIDPALLFELNRIGVNLNQIARQCNSQKPSIDLVSVLATLREIEKNLKKLRELSL
SIO_010081: HV561_RS11270
subclass of: SO_0000673
so part of: HV561_RS11270
location: 3547..3852
location: region:3547-3852:1
so has part: feature:3547-3852:1:exon

WP_012209820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3547-3852:1:exon

HV561_RS11520
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11520
pseudo: true
so part of: sequence
location: 3849..>4529
location: region:3849-4529:1
so has part: feature:3849-4529:1:exon
subclass of: SO_0000010

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4529:1
position: 4529
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3849-4529:1:exon

HV561_RS11520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11520
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: HV561_RS11520
subclass of: SO_0000673
so part of: HV561_RS11520
location: 3849..>4529
location: region:3849-4529:1
so has part: feature:3849-4529:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3849-4529:1:exon

HV561_RS11525
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11525
so part of: sequence
location: 4537..4809
location: region:4537-4809:1
so has part: feature:4537-4809:1:exon
subclass of: SO_0000010

position:4537:1
position: 4537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4809:1
position: 4809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4537-4809:1:exon

HV561_RS11525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11525
function: mobilization
inference: COORDINATES: protein motif:HMM:NF016710.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeB family mobilization protein
translation: MSKILDLAQTFQQTSQKELESTSEIVQNAIKRHEQNLIQQLQHAGNNLAENIQIEQAKLIKNTVRMYRLPTLIALTILTLIAITTPYPDL
SIO_010081: HV561_RS11525
subclass of: SO_0000673
so part of: HV561_RS11525
location: 4537..4809
location: region:4537-4809:1
so has part: feature:4537-4809:1:exon

WP_010890208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4537-4809:1:exon

HV561_RS11280
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
gene: sul2
locus tag: HV561_RS11280
old locus tag: HV561_11275
so part of: sequence
location: 5144..5959
location: region:5144-5959:1
so has part: feature:5144-5959:1:exon
subclass of: SO_0000010

position:5144:1
position: 5144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5959:1
position: 5959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5144-5959:1:exon

HV561_RS11280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
gene: sul2
locus tag: HV561_RS11280
old locus tag: HV561_11275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfonamide-resistant dihydropteroate synthase Sul2
translation: MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR
SIO_010081: HV561_RS11280
subclass of: SO_0000673
so part of: HV561_RS11280
location: 5144..5959
location: region:5144-5959:1
so has part: feature:5144-5959:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5144-5959:1:exon

HV561_RS11285
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11285
old locus tag: HV561_11280
so part of: sequence
location: 6026..6667
location: region:6026-6667:1
so has part: feature:6026-6667:1:exon
subclass of: SO_0000010

position:6026:1
position: 6026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6667:1
position: 6667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6026-6667:1:exon

HV561_RS11285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11285
old locus tag: HV561_11280
EC number: 2.3.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005826111.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type A-3 chloramphenicol O-acetyltransferase CatIII
translation: MNYTKFDVKNWVRREHFEFYRHRLPCGFSLTSKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFISRLQELCNSKLK
SIO_010081: HV561_RS11285
subclass of: SO_0000673
so part of: HV561_RS11285
location: 6026..6667
location: region:6026-6667:1
so has part: feature:6026-6667:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6026-6667:1:exon

HV561_RS11290
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
gene: aph(3'')-Ib
locus tag: HV561_RS11290
old locus tag: HV561_11285
so part of: sequence
location: 6737..7540
location: region:6737-7540:1
so has part: feature:6737-7540:1:exon
subclass of: SO_0000010

position:6737:1
position: 6737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7540:1
position: 7540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6737-7540:1:exon

HV561_RS11290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
gene: aph(3'')-Ib
locus tag: HV561_RS11290
old locus tag: HV561_11285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(3'')-Ib
translation: MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
SIO_010081: HV561_RS11290
subclass of: SO_0000673
so part of: HV561_RS11290
location: 6737..7540
location: region:6737-7540:1
so has part: feature:6737-7540:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6737-7540:1:exon

HV561_RS11530
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11530
pseudo: true
so part of: sequence
location: 7540..>7638
location: region:7540-7638:1
so has part: feature:7540-7638:1:exon
subclass of: SO_0000010

position:7638:1
position: 7638
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7540-7638:1:exon

HV561_RS11530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
GO function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO:0019748 - secondary metabolic process [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: aminoglycoside phosphotransferase family protein
SIO_010081: HV561_RS11530
subclass of: SO_0000673
so part of: HV561_RS11530
location: 7540..>7638
location: region:7540-7638:1
so has part: feature:7540-7638:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7540-7638:1:exon

HV561_RS11295
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11295
old locus tag: HV561_11290
so part of: sequence
location: 8538..8843
location: region:8538-8843:1
so has part: feature:8538-8843:1:exon
subclass of: SO_0000010

position:8538:1
position: 8538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8843:1
position: 8843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8538-8843:1:exon

HV561_RS11295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11295
old locus tag: HV561_11290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005618548.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MKREKEIKIRLTENEYQALLERKTKARLAEWVREIALEQQPNRQPKVIDPALLFELNRIGVNLNQIARQCNSQKPSIDLVSVLATLREIEKNLKKLRELSL
SIO_010081: HV561_RS11295
subclass of: SO_0000673
so part of: HV561_RS11295
location: 8538..8843
location: region:8538-8843:1
so has part: feature:8538-8843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8538-8843:1:exon

HV561_RS11535
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11535
pseudo: true
so part of: sequence
location: 8840..>9520
location: region:8840-9520:1
so has part: feature:8840-9520:1:exon
subclass of: SO_0000010

position:8840:1
position: 8840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9520:1
position: 9520
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8840-9520:1:exon

HV561_RS11535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11535
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: HV561_RS11535
subclass of: SO_0000673
so part of: HV561_RS11535
location: 8840..>9520
location: region:8840-9520:1
so has part: feature:8840-9520:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8840-9520:1:exon

HV561_RS11540
type: Gene
subclass of: SO_0000704
RO_0002162: 111844
locus tag: HV561_RS11540
so part of: sequence
location: 9528..9800
location: region:9528-9800:1
so has part: feature:9528-9800:1:exon
subclass of: SO_0000010

position:9528:1
position: 9528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9800:1
position: 9800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9528-9800:1:exon

HV561_RS11540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111844
locus tag: HV561_RS11540
function: mobilization
inference: COORDINATES: protein motif:HMM:NF016710.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeB family mobilization protein
translation: MSKILDLAQTFQQTSQKELESTSEIVQNAIKRHEQNLIQQLQHAGNNLAENIQIEQAKLIKNTVRMYRLPTLIALTILTLIAITTPYPDL
SIO_010081: HV561_RS11540
subclass of: SO_0000673
so part of: HV561_RS11540
location: 9528..9800
location: region:9528-9800:1
so has part: feature:9528-9800:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9528-9800:1:exon