Mannheimia pernigra strain 16CN0041 plasmid pMP1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.
Mannheimia pernigra sp. nov. isolated from bovine respiratory tract
Submitted (15-JUN-2020) Institute of Veterinary Bacteriology, University of Bern, Laenggassstr. 122, Bern 3012, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP055303.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 418x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 10:51:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,274\nCDSs (total) :: 2,183\nGenes (coding) :: 2,139\nCDSs (with protein) :: 2,139\nGenes (RNA) :: 91\nrRNAs :: 8, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 6, 6 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 15 of 44\nPseudo Genes (incomplete) :: 29 of 44\nPseudo Genes (internal stop) :: 6 of 44\nPseudo Genes (multiple problems) :: 6 of 44\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF016710.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015397.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005618548.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_011453049.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS982-like element IS1592 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006248867.1
tetracycline efflux MFS transporter Tet(H)
COORDINATES: similar to AA sequence:RefSeq:WP_006248868.1
tetracycline resistance transcriptional repressor TetR(H)
COORDINATES: similar to AA sequence:RefSeq:WP_004245619.1
COORDINATES: similar to AA sequence:RefSeq:WP_009874826.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.