Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.03, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Pleurocapsales; Dermocarpellaceae; Stanieria.
Finished plasmid 3 of genome of Stanieria cyanosphaera PCC 7437
Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003656.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4088212\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\nContacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Stanieria cyanosphaera PCC 7437\ncollection_date :: Missing\nlat_lon :: 23.133333 -82.366667\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Cuba\nenvironment :: Missing\nnum_replicons :: 6\nref_biomaterial :: PCC 7437, ATCC 29371\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04320\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: Pool at botanical garden, Havana, Cuba\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 01:40:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,040\nCDSs (total) :: 4,985\nGenes (coding) :: 4,925\nCDSs (with protein) :: 4,925\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 23 of 60\nPseudo Genes (incomplete) :: 36 of 60\nPseudo Genes (internal stop) :: 12 of 60\nPseudo Genes (multiple problems) :: 10 of 60\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015081709.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015159272.1
COORDINATES: similar to AA sequence:RefSeq:WP_019503282.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019503283.1
COORDINATES: similar to AA sequence:RefSeq:WP_019503284.1
COORDINATES: protein motif:HMM:NF017757.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF025120.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF040238.1
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_019503292.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488086.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994174.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019508007.1
COORDINATES: similar to AA sequence:RefSeq:WP_015158376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012165986.1
COORDINATES: similar to AA sequence:RefSeq:WP_015191200.1
COORDINATES: similar to AA sequence:RefSeq:WP_015191199.1
COORDINATES: protein motif:HMM:NF037206.2
S-4TM family putative pore-forming effector
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_009546474.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190013.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017740854.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006518776.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_015162977.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292269.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015211787.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292265.1
COORDINATES: similar to AA sequence:RefSeq:WP_015195742.1
COORDINATES: similar to AA sequence:RefSeq:WP_006509953.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010476511.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_010476508.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117892.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015211872.1
two-component system sensor histidine kinase RppB
COORDINATES: similar to AA sequence:RefSeq:WP_015211873.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
two-component system response regulator RppA
COORDINATES: similar to AA sequence:RefSeq:WP_019503247.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211875.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019503249.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211877.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015195746.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017308369.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015328599.1
COORDINATES: similar to AA sequence:RefSeq:WP_015212134.1
COORDINATES: similar to AA sequence:RefSeq:WP_009546032.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211878.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993944.1
COORDINATES: similar to AA sequence:RefSeq:WP_012594868.1
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015163189.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198658.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006620883.1
COORDINATES: similar to AA sequence:RefSeq:WP_017303563.1
COORDINATES: similar to AA sequence:RefSeq:WP_015902867.1
COORDINATES: similar to AA sequence:RefSeq:WP_012954370.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF013695.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_017292162.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741030.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006509959.1
COORDINATES: similar to AA sequence:RefSeq:WP_006509960.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor