Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Pleurocapsales; Dermocarpellaceae; Stanieria.
Finished plasmid 2 of genome of Stanieria cyanosphaera PCC 7437
Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003655.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4088212\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\nContacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Stanieria cyanosphaera PCC 7437\ncollection_date :: Missing\nlat_lon :: 23.133333 -82.366667\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Cuba\nenvironment :: Missing\nnum_replicons :: 6\nref_biomaterial :: PCC 7437, ATCC 29371\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04320\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: Pool at botanical garden, Havana, Cuba\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 01:40:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,040\nCDSs (total) :: 4,985\nGenes (coding) :: 4,925\nCDSs (with protein) :: 4,925\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 23 of 60\nPseudo Genes (incomplete) :: 36 of 60\nPseudo Genes (internal stop) :: 12 of 60\nPseudo Genes (multiple problems) :: 10 of 60\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007313183.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015212085.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015212083.1
COORDINATES: similar to AA sequence:RefSeq:WP_006507291.1
ssl1498 family light-harvesting-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_015191330.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408809.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015195662.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006509445.1
COORDINATES: similar to AA sequence:RefSeq:WP_015195710.1
COORDINATES: similar to AA sequence:RefSeq:WP_006519698.1
COORDINATES: similar to AA sequence:RefSeq:WP_011825424.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006510169.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010613290.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006104604.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019467708.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006510167.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015195628.1
COORDINATES: similar to AA sequence:RefSeq:WP_019492812.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019334.2
bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019503929.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016866441.1
COORDINATES: protein motif:HMM:NF020427.2
COORDINATES: similar to AA sequence:RefSeq:WP_015212076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407689.1
COORDINATES: similar to AA sequence:RefSeq:WP_006511897.1
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: similar to AA sequence:RefSeq:WP_015211964.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211963.1
COORDINATES: similar to AA sequence:RefSeq:WP_016866240.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016872870.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009546935.1
COORDINATES: protein motif:HMM:NF020246.2
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: similar to AA sequence:RefSeq:WP_017302202.1
COORDINATES: similar to AA sequence:RefSeq:WP_019503261.1
COORDINATES: similar to AA sequence:RefSeq:WP_015227844.1
COORDINATES: similar to AA sequence:RefSeq:WP_015227843.1
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: similar to AA sequence:RefSeq:WP_018398165.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015195674.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408597.1
COORDINATES: similar to AA sequence:RefSeq:WP_006101678.1
COORDINATES: protein motif:HMM:NF013395.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012630.2
GO:0031012 - extracellular matrix [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015134672.1
COORDINATES: similar to AA sequence:RefSeq:WP_009630188.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011142276.1
COORDINATES: similar to AA sequence:RefSeq:WP_017297168.1
COORDINATES: similar to AA sequence:RefSeq:WP_015205189.1
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: protein motif:HMM:NF025000.2
COORDINATES: similar to AA sequence:RefSeq:WP_015195664.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179641.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654906.1
COORDINATES: similar to AA sequence:RefSeq:WP_006618696.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017324823.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015179840.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF013087.2
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019491309.1
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: similar to AA sequence:RefSeq:WP_015158728.1
COORDINATES: protein motif:HMM:NF012570.2
COORDINATES: similar to AA sequence:RefSeq:WP_012593019.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015195699.1
Nif11-like leader peptide family natural product precursor
COORDINATES: similar to AA sequence:RefSeq:WP_006513385.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015813.1
COORDINATES: similar to AA sequence:RefSeq:WP_017301790.1