Thiothrix unzii strain A1 plasmid pTunz4, complete sequence.
type: Entry
definition: Thiothrix unzii strain A1 plasmid pTunz4, complete sequence.
sequence version: NZ_CP072799.1
sequence date: 2023-05-07
sequence: sequence
division: CON
label: NZ_CP072799.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18614033
keyword: RefSeq
source: Thiothrix unzii
organism: Thiothrix unzii
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP072799.1.\nBacteria and source DNA available from Dr. Margarita Grabovich\n(margarita_grabov@mail.ru).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-MAR-2021\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 448.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 04:54:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,728\nCDSs (total) :: 3,673\nGenes (coding) :: 3,656\nCDSs (with protein) :: 3,656\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 7 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 1 of 17\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18228
topology: circular
so has quality: SO_0000988
location: 1..18228
location: region:1-18228:1
RO_0002162: 111769

NZ_CP072799
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18614033
type: BioSample
SIO_000068: biosample

1
title: Genomics, taxonomy and metabolism of representatives of sulfur bacteria of the genus Thiothrix: Thiothrix fructosivorans QT, Thiothrix unzii A1T and three new species, Thiothrix subterranea sp. nov., Thiothrix litoralis sp. nov. and 'Candidatus Thiothrix anitrata' sp. nov
author: Ravin, N.V.
author: Smolyakov, D.
author: Rudenko, T.S.
author: Mardanov, A.V.
author: Beletsky, A.V.
author: Markov, N.D.
author: Fomenkov, A.I.
author: Roberts, R.J.
author: Karnachuk, O.V.
author: Novikov, A.
author: Grabovich, M.Y.
journal: Unpublished

2
title: Direct Submission
author: Ravin, N.V.
author: Beletsky, A.V.
author: Mardanov, A.V.
journal: Submitted (05-APR-2021) Department of molecular biology of microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-let Oktyabrya, bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18228:1
position: 18228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18228:1:source
so part of: sequence
organism: Thiothrix unzii
mol type: genomic DNA
strain: A1
isolation source: Isolated from activated-sludge plants
type material: type strain of Thiothrix unzii
plasmid: pTunz4

111769
type: Taxonomy
SIO_000068: taxonomy

J9260_RS18460
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18460
old locus tag: J9260_18455
so part of: sequence
location: join(18093..18228,1..536)
location: region:1-18228:1
so has part: feature:18093-18228:1:exon
so has part: feature:1-536:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:18093-18228:1:exon

position:18093:1
position: 18093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-536:1:exon

position:536:1
position: 536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

J9260_RS18460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18460
old locus tag: J9260_18455
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIPPVEGFIRMGSLHYLYAETAEKGYSEFLETLSNISEFGEVEYDEKLEELKYLRNVAGLQAIVFSAMSFETAIYDFASIHLGDDYVRDHLDRLDVLSKWLVVLRFVTGTELPKNEAPYAALKSLIFQRNRLVHSKSEPFDFEDQKRQFDKFMKREKELEKNVHNSFRALVLMSLYLEKVLDGHHNPLPSYNKQNAPMRRYYNELKSVIYECRNLVAKIGHS
SIO_010081: J9260_RS18460
subclass of: SO_0000673
so part of: J9260_RS18460
location: join(18093..18228,1..536)
location: region:1-18228:1
so has part: feature:18093-18228:1:exon
so has part: feature:1-536:1:exon

WP_210220947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18093-18228:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-536:1:exon

J9260_RS18465
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18465
old locus tag: J9260_18460
so part of: sequence
location: 1726..2868
location: region:1726-2868:1
so has part: feature:1726-2868:1:exon
subclass of: SO_0000010

position:1726:1
position: 1726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2868:1
position: 2868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1726-2868:1:exon

J9260_RS18465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18465
old locus tag: J9260_18460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706474.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSVSNLPQVSLQHNERNEVRKSNQLIEARYRLTLGEQRLILHLCSLIHSSDKDFKSYEIRVKDFAKMFALEKRNNIYKAVENAAKELAGKRLDISRDGKEIYVSWLSYVEYVEGSGIVKVEFHRSLKPYLLQLQEYGNFTKYQVNHVVSFKSQYSIRLYELLKQKAFTAEKRKFSRCFEIESFRSILGIAVNEYEVFSNLRRKVIEPAIEEVSEYTDLEITDVHYGKTGRKVTDITFEVEIRQADEIQALQLEMEEEPSKEQPHPLVERLINLGFAVETAQRYKTKYGTKRIERNIAYTLAKQQEGAVKDIPAYLNMAIKEDMGGGWEVAKTKAVEEKTQQQTVSNQREKQAELAHLQKMAEMAGVPLETLLPKQPKGGN
SIO_010081: J9260_RS18465
subclass of: SO_0000673
so part of: J9260_RS18465
location: 1726..2868
location: region:1726-2868:1
so has part: feature:1726-2868:1:exon

WP_246499851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1726-2868:1:exon

J9260_RS18470
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18470
old locus tag: J9260_18465
so part of: sequence
location: 2965..3279
location: region:2965-3279:1
so has part: feature:2965-3279:1:exon
subclass of: SO_0000010

position:2965:1
position: 2965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3279:1
position: 3279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2965-3279:1:exon

J9260_RS18470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18470
old locus tag: J9260_18465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTHDSNLRPSVRNKKRNSRPSTAPMDKTVSADQHPTPFPTFGNNFRTLSPLECAAFALAQLYPDDPENLAADYAVALAEFERLQGGEKCTCTVATDVVTGDCT
SIO_010081: J9260_RS18470
subclass of: SO_0000673
so part of: J9260_RS18470
location: 2965..3279
location: region:2965-3279:1
so has part: feature:2965-3279:1:exon

WP_210220937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2965-3279:1:exon

J9260_RS18475
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18475
old locus tag: J9260_18470
so part of: sequence
location: 3653..3856
location: region:3653-3856:1
so has part: feature:3653-3856:1:exon
subclass of: SO_0000010

position:3653:1
position: 3653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3856:1
position: 3856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3653-3856:1:exon

J9260_RS18475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18475
old locus tag: J9260_18470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012695876.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2158 domain-containing protein
translation: MSNQNKYDLGDIVKLKSGGPDMTVKEVLTKMNHEFNGSYRCQWFAGKKLDMGVFPEESLVAVTTGSQ
SIO_010081: J9260_RS18475
subclass of: SO_0000673
so part of: J9260_RS18475
location: 3653..3856
location: region:3653-3856:1
so has part: feature:3653-3856:1:exon

WP_210220938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3653-3856:1:exon

J9260_RS18480
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18480
old locus tag: J9260_18475
so part of: sequence
location: 3856..4122
location: region:3856-4122:1
so has part: feature:3856-4122:1:exon
subclass of: SO_0000010

position:4122:1
position: 4122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3856-4122:1:exon

J9260_RS18480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18480
old locus tag: J9260_18475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004772961.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNITEASVWMRSQLDEDGCLYQDDVVDYLVKEGAEALLRENTDGNLVLERKLLNEFRKLTQDEVVWVKPDKYWRFRVPEDEPSRDARG
SIO_010081: J9260_RS18480
subclass of: SO_0000673
so part of: J9260_RS18480
location: 3856..4122
location: region:3856-4122:1
so has part: feature:3856-4122:1:exon

WP_210220939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3856-4122:1:exon

J9260_RS18485
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18485
old locus tag: J9260_18480
so part of: sequence
location: complement(4198..4848)
location: region:4198-4848:-1
so has part: feature:4198-4848:-1:exon
subclass of: SO_0000010

position:4198:-1
position: 4198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4848:-1
position: 4848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4198-4848:-1:exon

J9260_RS18485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18485
old locus tag: J9260_18480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010371015.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3800 domain-containing protein
translation: MIIYLDESGDLGWKFTAPYRDGGSSRYITIASLAVSPDKKHLPKRLIKKLYKKFNWPIDIEKKWSNMTIDERVWFASQAATLRNRYSDDIRYISITVKKENVEPHIRSDANMLYNYMIGLSLLNEMAKHDAITFIPDPRSIKVESGSSLHDYLQTQLWFEKQVTTILTTQPCNSATSLNVQFSDMLSGVVQGHFEDGNSSPWSKLRTQISYKTLFF
SIO_010081: J9260_RS18485
subclass of: SO_0000673
so part of: J9260_RS18485
location: complement(4198..4848)
location: region:4198-4848:-1
so has part: feature:4198-4848:-1:exon

WP_210220940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4198-4848:-1:exon

J9260_RS18490
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18490
old locus tag: J9260_18485
so part of: sequence
location: complement(5020..5262)
location: region:5020-5262:-1
so has part: feature:5020-5262:-1:exon
subclass of: SO_0000010

position:5020:-1
position: 5020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5262:-1
position: 5262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5020-5262:-1:exon

J9260_RS18490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18490
old locus tag: J9260_18485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017161425.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MTITKAKPKTTQQETATADFIAGAPDSGTAIKGVKKGNKQQISLTMSPALLAKVDALAEKMGQSRAAVINMAVYRAVELE
SIO_010081: J9260_RS18490
subclass of: SO_0000673
so part of: J9260_RS18490
location: complement(5020..5262)
location: region:5020-5262:-1
so has part: feature:5020-5262:-1:exon

WP_210220941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5020-5262:-1:exon

J9260_RS18495
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18495
old locus tag: J9260_18490
so part of: sequence
location: complement(5313..5954)
location: region:5313-5954:-1
so has part: feature:5313-5954:-1:exon
subclass of: SO_0000010

position:5313:-1
position: 5313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5954:-1
position: 5954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5313-5954:-1:exon

J9260_RS18495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18495
old locus tag: J9260_18490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013106013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MILTVGNTKGGVGKTTLAVNIAIARALAGRDVWLVDADRQGTAQMAISIRADAGILPGIACSQYADGPVLRGQVQQQGKKYDDIIIDAGGRDSTALRAALVLSDVLLVPFQPRSYDVWALNDIAALVDEARSVRDGLRVYAVLNCADPGTTSTDNSEAAAAVADVPQFEYLPTPIRRRKAFANAAGQGLAVLELNPKDAKAIEELNHIVSALF
SIO_010081: J9260_RS18495
subclass of: SO_0000673
so part of: J9260_RS18495
location: complement(5313..5954)
location: region:5313-5954:-1
so has part: feature:5313-5954:-1:exon

WP_210220942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5313-5954:-1:exon

J9260_RS18500
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18500
old locus tag: J9260_18495
so part of: sequence
location: complement(6045..6347)
location: region:6045-6347:-1
so has part: feature:6045-6347:-1:exon
subclass of: SO_0000010

position:6045:-1
position: 6045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6347:-1
position: 6347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6045-6347:-1:exon

J9260_RS18500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18500
old locus tag: J9260_18495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016558195.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPSLIFSHTALLDLERLRAFLRAKNLPAARRAVVKIMQGLQALEQHPELGHTVEDRPEDYRELVIPFGKDGYIAAYRYAGDSLVVLGVRHQRELQPPTLP
SIO_010081: J9260_RS18500
subclass of: SO_0000673
so part of: J9260_RS18500
location: complement(6045..6347)
location: region:6045-6347:-1
so has part: feature:6045-6347:-1:exon

WP_210220943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6045-6347:-1:exon

J9260_RS18505
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18505
old locus tag: J9260_18500
so part of: sequence
location: complement(6335..6607)
location: region:6335-6607:-1
so has part: feature:6335-6607:-1:exon
subclass of: SO_0000010

position:6335:-1
position: 6335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6607:-1
position: 6607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6335-6607:-1:exon

J9260_RS18505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18505
old locus tag: J9260_18500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019022923.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MPTSIKLDMDTKTRLQRLATSRQRSTHWLMQEAIRQYLEREEQLAQFRDEMQTAWDDYQDTGLHVTGKEVFAWMETWFTDSEAQTPKCHH
SIO_010081: J9260_RS18505
subclass of: SO_0000673
so part of: J9260_RS18505
location: complement(6335..6607)
location: region:6335-6607:-1
so has part: feature:6335-6607:-1:exon

WP_202719288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6335-6607:-1:exon

J9260_RS18510
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18510
old locus tag: J9260_18505
so part of: sequence
location: complement(6733..7038)
location: region:6733-7038:-1
so has part: feature:6733-7038:-1:exon
subclass of: SO_0000010

position:6733:-1
position: 6733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7038:-1
position: 7038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6733-7038:-1:exon

J9260_RS18510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18510
old locus tag: J9260_18505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDTSPFQDRYHIRFRGRRTTVTLDKILSELIAMSFGLTPDRTDYHSTVQQWLQATLTDKLGENVPGGSHISQYARKYAIEEIARRELVEQLWDWRIAKNG
SIO_010081: J9260_RS18510
subclass of: SO_0000673
so part of: J9260_RS18510
location: complement(6733..7038)
location: region:6733-7038:-1
so has part: feature:6733-7038:-1:exon

WP_210220944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6733-7038:-1:exon

J9260_RS18515
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18515
old locus tag: J9260_18510
so part of: sequence
location: 7433..7795
location: region:7433-7795:1
so has part: feature:7433-7795:1:exon
subclass of: SO_0000010

position:7433:1
position: 7433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7795:1
position: 7795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7433-7795:1:exon

J9260_RS18515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18515
old locus tag: J9260_18510
inference: COORDINATES: protein motif:HMM:NF022172.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2513 domain-containing protein
translation: MQRNWDTIREILLAVENLEPEKQLHLSDFPEARAHEVSYHVQLIAQSGLIDVTISQSTSLKAKDFFIRNLTWSGHEFLDSIRVKDTWSKIKSVVAEKGGVMTFEVIKAVSTSLIKSAIGS
SIO_010081: J9260_RS18515
subclass of: SO_0000673
so part of: J9260_RS18515
location: 7433..7795
location: region:7433-7795:1
so has part: feature:7433-7795:1:exon

WP_210220945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7433-7795:1:exon

J9260_RS18520
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18520
old locus tag: J9260_18515
so part of: sequence
location: 7922..8881
location: region:7922-8881:1
so has part: feature:7922-8881:1:exon
subclass of: SO_0000010

position:7922:1
position: 7922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8881:1
position: 8881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7922-8881:1:exon

J9260_RS18520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18520
old locus tag: J9260_18515
inference: COORDINATES: protein motif:HMM:NF017020.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HEPN domain-containing protein
translation: MSNELKGHIDEHMPHIDEMLAEQNIPIHKRFFIAGKLFVETAIQKSSFQSNDELLKSEVYRECILPLFNDWYFEKYGDLAKGPGGDVYSGVVLAYGQPVKLNIPATTNEVLEEGKLAKMTFPDHLQESENLEDLIEPKFKLSKMEESSVCELRSQIERVVALTRSINLDLNMASNVNQPASDMVQGIWSHFEKGISDMLSLKNERASIACWEFHLAIEKSIKVLIHSKSGSSKHGHNLKDLITHLSKFESGVDSSGLAGLPSDKEAIKLRYAEMIKTPIDAFKYYLVALEFVSDIVSRLEHKVGIKNASFTLKMAPWAK
SIO_010081: J9260_RS18520
subclass of: SO_0000673
so part of: J9260_RS18520
location: 7922..8881
location: region:7922-8881:1
so has part: feature:7922-8881:1:exon

WP_210220946.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7922-8881:1:exon

J9260_RS18525
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18525
old locus tag: J9260_18520
so part of: sequence
location: 8979..9650
location: region:8979-9650:1
so has part: feature:8979-9650:1:exon
subclass of: SO_0000010

position:8979:1
position: 8979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9650:1
position: 9650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8979-9650:1:exon

J9260_RS18525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18525
old locus tag: J9260_18520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIPPVEGFIRMGSLHYLYAETAEKGYSEFLETLSNISEFGEVEYDEKLEELKYLRNVAGLQAIVFSAMSFETAIYDFASIHLGDDYVRDHLDRLDVLSKWLVVLRFVTGTELPKNEAPYAALKSLIFQRNRLVHSKSEPFDFEDQKRQFDKFMKREKELEKNVHNSFRALVLMSLYLEKVLDGHHNPLPSYNKQNAPMRRYYNELKSVIYECRNLVAKIGHS
SIO_010081: J9260_RS18525
subclass of: SO_0000673
so part of: J9260_RS18525
location: 8979..9650
location: region:8979-9650:1
so has part: feature:8979-9650:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8979-9650:1:exon

J9260_RS18530
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18530
old locus tag: J9260_18525
so part of: sequence
location: 10840..11982
location: region:10840-11982:1
so has part: feature:10840-11982:1:exon
subclass of: SO_0000010

position:10840:1
position: 10840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11982:1
position: 11982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10840-11982:1:exon

J9260_RS18530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18530
old locus tag: J9260_18525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706474.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSVSNLPQVSLQHNERNEVRKSNQLIEARYRLTLGEQRLILHLCSLIHSSDKDFKSYEIRVKDFAKMFALEKRNNIYKAVENAAKELAGKRLDISRDGKEIYVSWLSYVEYVEGSGIVKVEFHRSLKPYLLQLQEYGNFTKYQVNHVVSFKSQYSIRLYELLKQKAFTAEKRKFSRCFEIESFRSILGIAVNEYEVFSNLRRKVIEPAIEEVSEYTDLEITDVHYGKTGRKVTDITFEVEIRQADEIQALQLEMEEEPSKEQPHPLVERLINLGFAVETAQRYKTKYGTKRIERNIAYTLAKQQEGAVKDIPAYLNMAIKEDMGGGWEVAKTKAVEEKTQQQTVSNQREKQAELAHLQKMAEMAGVPLETLLPKQPKGGN
SIO_010081: J9260_RS18530
subclass of: SO_0000673
so part of: J9260_RS18530
location: 10840..11982
location: region:10840-11982:1
so has part: feature:10840-11982:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10840-11982:1:exon

J9260_RS18535
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18535
old locus tag: J9260_18530
so part of: sequence
location: 12079..12393
location: region:12079-12393:1
so has part: feature:12079-12393:1:exon
subclass of: SO_0000010

position:12079:1
position: 12079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12393:1
position: 12393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12079-12393:1:exon

J9260_RS18535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18535
old locus tag: J9260_18530
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTHDSNLRPSVRNKKRNSRPSTAPMDKTVSADQHPTPFPTFGNNFRTLSPLECAAFALAQLYPDDPENLAADYAVALAEFERLQGGEKCTCTVATDVVTGDCT
SIO_010081: J9260_RS18535
subclass of: SO_0000673
so part of: J9260_RS18535
location: 12079..12393
location: region:12079-12393:1
so has part: feature:12079-12393:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12079-12393:1:exon

J9260_RS18540
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18540
old locus tag: J9260_18535
so part of: sequence
location: 12767..12970
location: region:12767-12970:1
so has part: feature:12767-12970:1:exon
subclass of: SO_0000010

position:12767:1
position: 12767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12970:1
position: 12970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12767-12970:1:exon

J9260_RS18540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18540
old locus tag: J9260_18535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012695876.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2158 domain-containing protein
translation: MSNQNKYDLGDIVKLKSGGPDMTVKEVLTKMNHEFNGSYRCQWFAGKKLDMGVFPEESLVAVTTGSQ
SIO_010081: J9260_RS18540
subclass of: SO_0000673
so part of: J9260_RS18540
location: 12767..12970
location: region:12767-12970:1
so has part: feature:12767-12970:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12767-12970:1:exon

J9260_RS18545
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18545
old locus tag: J9260_18540
so part of: sequence
location: 12970..13236
location: region:12970-13236:1
so has part: feature:12970-13236:1:exon
subclass of: SO_0000010

position:13236:1
position: 13236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12970-13236:1:exon

J9260_RS18545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18545
old locus tag: J9260_18540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004772961.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNITEASVWMRSQLDEDGCLYQDDVVDYLVKEGAEALLRENTDGNLVLERKLLNEFRKLTQDEVVWVKPDKYWRFRVPEDEPSRDARG
SIO_010081: J9260_RS18545
subclass of: SO_0000673
so part of: J9260_RS18545
location: 12970..13236
location: region:12970-13236:1
so has part: feature:12970-13236:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12970-13236:1:exon

J9260_RS18550
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18550
old locus tag: J9260_18545
so part of: sequence
location: complement(13312..13962)
location: region:13312-13962:-1
so has part: feature:13312-13962:-1:exon
subclass of: SO_0000010

position:13312:-1
position: 13312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13962:-1
position: 13962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13312-13962:-1:exon

J9260_RS18550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18550
old locus tag: J9260_18545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010371015.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3800 domain-containing protein
translation: MIIYLDESGDLGWKFTAPYRDGGSSRYITIASLAVSPDKKHLPKRLIKKLYKKFNWPIDIEKKWSNMTIDERVWFASQAATLRNRYSDDIRYISITVKKENVEPHIRSDANMLYNYMIGLSLLNEMAKHDAITFIPDPRSIKVESGSSLHDYLQTQLWFEKQVTTILTTQPCNSATSLNVQFSDMLSGVVQGHFEDGNSSPWSKLRTQISYKTLFF
SIO_010081: J9260_RS18550
subclass of: SO_0000673
so part of: J9260_RS18550
location: complement(13312..13962)
location: region:13312-13962:-1
so has part: feature:13312-13962:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13312-13962:-1:exon

J9260_RS18555
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18555
old locus tag: J9260_18550
so part of: sequence
location: complement(14134..14376)
location: region:14134-14376:-1
so has part: feature:14134-14376:-1:exon
subclass of: SO_0000010

position:14134:-1
position: 14134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14376:-1
position: 14376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14134-14376:-1:exon

J9260_RS18555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18555
old locus tag: J9260_18550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017161425.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MTITKAKPKTTQQETATADFIAGAPDSGTAIKGVKKGNKQQISLTMSPALLAKVDALAEKMGQSRAAVINMAVYRAVELE
SIO_010081: J9260_RS18555
subclass of: SO_0000673
so part of: J9260_RS18555
location: complement(14134..14376)
location: region:14134-14376:-1
so has part: feature:14134-14376:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14134-14376:-1:exon

J9260_RS18560
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18560
old locus tag: J9260_18555
so part of: sequence
location: complement(14427..15068)
location: region:14427-15068:-1
so has part: feature:14427-15068:-1:exon
subclass of: SO_0000010

position:14427:-1
position: 14427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15068:-1
position: 15068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14427-15068:-1:exon

J9260_RS18560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18560
old locus tag: J9260_18555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013106013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MILTVGNTKGGVGKTTLAVNIAIARALAGRDVWLVDADRQGTAQMAISIRADAGILPGIACSQYADGPVLRGQVQQQGKKYDDIIIDAGGRDSTALRAALVLSDVLLVPFQPRSYDVWALNDIAALVDEARSVRDGLRVYAVLNCADPGTTSTDNSEAAAAVADVPQFEYLPTPIRRRKAFANAAGQGLAVLELNPKDAKAIEELNHIVSALF
SIO_010081: J9260_RS18560
subclass of: SO_0000673
so part of: J9260_RS18560
location: complement(14427..15068)
location: region:14427-15068:-1
so has part: feature:14427-15068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14427-15068:-1:exon

J9260_RS18565
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18565
old locus tag: J9260_18560
so part of: sequence
location: complement(15159..15461)
location: region:15159-15461:-1
so has part: feature:15159-15461:-1:exon
subclass of: SO_0000010

position:15159:-1
position: 15159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15461:-1
position: 15461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15159-15461:-1:exon

J9260_RS18565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18565
old locus tag: J9260_18560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016558195.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPSLIFSHTALLDLERLRAFLRAKNLPAARRAVVKIMQGLQALEQHPELGHTVEDRPEDYRELVIPFGKDGYIAAYRYAGDSLVVLGVRHQRELQPPTLP
SIO_010081: J9260_RS18565
subclass of: SO_0000673
so part of: J9260_RS18565
location: complement(15159..15461)
location: region:15159-15461:-1
so has part: feature:15159-15461:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15159-15461:-1:exon

J9260_RS18570
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18570
old locus tag: J9260_18565
so part of: sequence
location: complement(15449..15721)
location: region:15449-15721:-1
so has part: feature:15449-15721:-1:exon
subclass of: SO_0000010

position:15449:-1
position: 15449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15721:-1
position: 15721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15449-15721:-1:exon

J9260_RS18570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18570
old locus tag: J9260_18565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019022923.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MPTSIKLDMDTKTRLQRLATSRQRSTHWLMQEAIRQYLEREEQLAQFRDEMQTAWDDYQDTGLHVTGKEVFAWMETWFTDSEAQTPKCHH
SIO_010081: J9260_RS18570
subclass of: SO_0000673
so part of: J9260_RS18570
location: complement(15449..15721)
location: region:15449-15721:-1
so has part: feature:15449-15721:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15449-15721:-1:exon

J9260_RS18575
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18575
old locus tag: J9260_18570
so part of: sequence
location: complement(15847..16152)
location: region:15847-16152:-1
so has part: feature:15847-16152:-1:exon
subclass of: SO_0000010

position:15847:-1
position: 15847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16152:-1
position: 16152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15847-16152:-1:exon

J9260_RS18575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18575
old locus tag: J9260_18570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDTSPFQDRYHIRFRGRRTTVTLDKILSELIAMSFGLTPDRTDYHSTVQQWLQATLTDKLGENVPGGSHISQYARKYAIEEIARRELVEQLWDWRIAKNG
SIO_010081: J9260_RS18575
subclass of: SO_0000673
so part of: J9260_RS18575
location: complement(15847..16152)
location: region:15847-16152:-1
so has part: feature:15847-16152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15847-16152:-1:exon

J9260_RS18580
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18580
old locus tag: J9260_18575
so part of: sequence
location: 16547..16909
location: region:16547-16909:1
so has part: feature:16547-16909:1:exon
subclass of: SO_0000010

position:16547:1
position: 16547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16909:1
position: 16909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16547-16909:1:exon

J9260_RS18580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18580
old locus tag: J9260_18575
inference: COORDINATES: protein motif:HMM:NF022172.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2513 domain-containing protein
translation: MQRNWDTIREILLAVENLEPEKQLHLSDFPEARAHEVSYHVQLIAQSGLIDVTISQSTSLKAKDFFIRNLTWSGHEFLDSIRVKDTWSKIKSVVAEKGGVMTFEVIKAVSTSLIKSAIGS
SIO_010081: J9260_RS18580
subclass of: SO_0000673
so part of: J9260_RS18580
location: 16547..16909
location: region:16547-16909:1
so has part: feature:16547-16909:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16547-16909:1:exon

J9260_RS18585
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18585
old locus tag: J9260_18580
so part of: sequence
location: 17036..17995
location: region:17036-17995:1
so has part: feature:17036-17995:1:exon
subclass of: SO_0000010

position:17036:1
position: 17036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17995:1
position: 17995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17036-17995:1:exon

J9260_RS18585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18585
old locus tag: J9260_18580
inference: COORDINATES: protein motif:HMM:NF017020.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HEPN domain-containing protein
translation: MSNELKGHIDEHMPHIDEMLAEQNIPIHKRFFIAGKLFVETAIQKSSFQSNDELLKSEVYRECILPLFNDWYFEKYGDLAKGPGGDVYSGVVLAYGQPVKLNIPATTNEVLEEGKLAKMTFPDHLQESENLEDLIEPKFKLSKMEESSVCELRSQIERVVALTRSINLDLNMASNVNQPASDMVQGIWSHFEKGISDMLSLKNERASIACWEFHLAIEKSIKVLIHSKSGSSKHGHNLKDLITHLSKFESGVDSSGLAGLPSDKEAIKLRYAEMIKTPIDAFKYYLVALEFVSDIVSRLEHKVGIKNASFTLKMAPWAK
SIO_010081: J9260_RS18585
subclass of: SO_0000673
so part of: J9260_RS18585
location: 17036..17995
location: region:17036-17995:1
so has part: feature:17036-17995:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17036-17995:1:exon