Thiothrix unzii strain A1 plasmid pTunz6, complete sequence.
type: Entry
definition: Thiothrix unzii strain A1 plasmid pTunz6, complete sequence.
sequence version: NZ_CP072798.1
sequence date: 2023-05-07
sequence: sequence
division: CON
label: NZ_CP072798.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18614033
keyword: RefSeq
source: Thiothrix unzii
organism: Thiothrix unzii
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP072798.1.\nBacteria and source DNA available from Dr. Margarita Grabovich\n(margarita_grabov@mail.ru).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-MAR-2021\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 448.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 04:54:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,728\nCDSs (total) :: 3,673\nGenes (coding) :: 3,656\nCDSs (with protein) :: 3,656\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 7 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 1 of 17\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14317
topology: circular
so has quality: SO_0000988
location: 1..14317
location: region:1-14317:1
RO_0002162: 111769

NZ_CP072798
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18614033
type: BioSample
SIO_000068: biosample

1
title: Genomics, taxonomy and metabolism of representatives of sulfur bacteria of the genus Thiothrix: Thiothrix fructosivorans QT, Thiothrix unzii A1T and three new species, Thiothrix subterranea sp. nov., Thiothrix litoralis sp. nov. and 'Candidatus Thiothrix anitrata' sp. nov
author: Ravin, N.V.
author: Smolyakov, D.
author: Rudenko, T.S.
author: Mardanov, A.V.
author: Beletsky, A.V.
author: Markov, N.D.
author: Fomenkov, A.I.
author: Roberts, R.J.
author: Karnachuk, O.V.
author: Novikov, A.
author: Grabovich, M.Y.
journal: Unpublished

2
title: Direct Submission
author: Ravin, N.V.
author: Beletsky, A.V.
author: Mardanov, A.V.
journal: Submitted (05-APR-2021) Department of molecular biology of microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-let Oktyabrya, bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14317:1
position: 14317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14317:1:source
so part of: sequence
organism: Thiothrix unzii
mol type: genomic DNA
strain: A1
isolation source: Isolated from activated-sludge plants
type material: type strain of Thiothrix unzii
plasmid: pTunz6

111769
type: Taxonomy
SIO_000068: taxonomy

J9260_RS18380
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18380
old locus tag: J9260_18375
so part of: sequence
location: join(13867..14317,1..506)
location: region:1-14317:1
so has part: feature:13867-14317:1:exon
so has part: feature:1-506:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:13867-14317:1:exon

position:13867:1
position: 13867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-506:1:exon

position:506:1
position: 506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

J9260_RS18380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18380
old locus tag: J9260_18375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MDTLFSRHLVIHDIDEETGKPEVIKIRWINEASYVDGSGNIKIVFSRRIIPYISQLEIKFTPYLLKQISKMTSVHAIRIYELLAQYVTYGKREISIDWLKNTLQLEGEYPRIYDLKERVIDVAVDQINKYSDINVNYTNIKTGRAITGFLFTINKTKPKIDEAAKVENNNTDFKTLLAFVPDAHRAKKSVIAALESSEKKHGFDYVKRNILYSNANAAKSYAGFLNSALKQDWGHDLELEQKEAIEGKQTVHAAEKLNKMAAELRELAGEIKSLQHNSKLTHDAALWNQAETLKQKYFALETLYQAAKQNEEVTNPTL
SIO_010081: J9260_RS18380
subclass of: SO_0000673
so part of: J9260_RS18380
location: join(13867..14317,1..506)
location: region:1-14317:1
so has part: feature:13867-14317:1:exon
so has part: feature:1-506:1:exon

WP_246499849.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13867-14317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-506:1:exon

J9260_RS18385
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18385
old locus tag: J9260_18380
so part of: sequence
location: 591..1241
location: region:591-1241:1
so has part: feature:591-1241:1:exon
subclass of: SO_0000010

position:591:1
position: 591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1241:1
position: 1241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:591-1241:1:exon

J9260_RS18385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18385
old locus tag: J9260_18380
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTHDSNLRPSVRKFETGDIPGAADSDTTVSTPNKPTPGSGETFAAKLLRAAGRLTPSLPPSPGTRNRGDVHQENLPRWPAPNVRGVSPAPSRPNVRGVYAPIAGELMQEALAGVRRHVPAVLSPHFETLYSAWLAELLAGVPVLAARPAQRFLHLRIRAGLRVAILPGGLHALAGLFRAKAFAQGILRANPRYTGRPPYPRFILADGGKHEPREP
SIO_010081: J9260_RS18385
subclass of: SO_0000673
so part of: J9260_RS18385
location: 591..1241
location: region:591-1241:1
so has part: feature:591-1241:1:exon

WP_210220928.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:591-1241:1:exon

J9260_RS18390
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18390
old locus tag: J9260_18385
so part of: sequence
location: 1267..1551
location: region:1267-1551:1
so has part: feature:1267-1551:1:exon
subclass of: SO_0000010

position:1267:1
position: 1267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1551:1
position: 1551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1267-1551:1:exon

J9260_RS18390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18390
old locus tag: J9260_18385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQMYPDDKRRRQELAARVAAEIPAISPQIGADALAVVYEWLEANGVETLPSGHYRPFFVGALVRLLGFCRGGWKSTDFRECLRVTVWRLLGFRQ
SIO_010081: J9260_RS18390
subclass of: SO_0000673
so part of: J9260_RS18390
location: 1267..1551
location: region:1267-1551:1
so has part: feature:1267-1551:1:exon

WP_210220929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1267-1551:1:exon

J9260_RS18395
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18395
old locus tag: J9260_18390
so part of: sequence
location: complement(1624..2058)
location: region:1624-2058:-1
so has part: feature:1624-2058:-1:exon
subclass of: SO_0000010

position:1624:-1
position: 1624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2058:-1
position: 2058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1624-2058:-1:exon

J9260_RS18395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18395
old locus tag: J9260_18390
inference: COORDINATES: protein motif:HMM:TIGR00305.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MTTTQKRLVLDTNTLISAFVNESSASASFFRQVRRTHELLASTETIAELVKTIQKNKFNKSFEGREEKRKGLVIDYTDLVTVVIITQVSTECRDPKDNKFLSLALSGGADFIISGDKDLTVLNPYHGIRILTMREYADEVGIVL
SIO_010081: J9260_RS18395
subclass of: SO_0000673
so part of: J9260_RS18395
location: complement(1624..2058)
location: region:1624-2058:-1
so has part: feature:1624-2058:-1:exon

WP_210220930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1624-2058:-1:exon

J9260_RS18400
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18400
old locus tag: J9260_18395
so part of: sequence
location: complement(2072..2587)
location: region:2072-2587:-1
so has part: feature:2072-2587:-1:exon
subclass of: SO_0000010

position:2072:-1
position: 2072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2587:-1
position: 2587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2072-2587:-1:exon

J9260_RS18400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18400
old locus tag: J9260_18395
inference: COORDINATES: protein motif:HMM:TIGR01552.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MQVLPSLEVKNKFGKFSTIVDRGEIVTVTKHGEPTMVVLPVRFAQEIQRALRRYYVTEKVKVSDGILEWLVELPLSEETATPAPAFDEEAEKQKIREMVAKELGIPVPKPSTREAALAAFDRYEEEALKNKQPPMTDEEEAEFMKLVDEAREEVWQEQQAEKAKLPVSASH
SIO_010081: J9260_RS18400
subclass of: SO_0000673
so part of: J9260_RS18400
location: complement(2072..2587)
location: region:2072-2587:-1
so has part: feature:2072-2587:-1:exon

WP_210220931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2072-2587:-1:exon

J9260_RS18405
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18405
old locus tag: J9260_18400
so part of: sequence
location: complement(2651..3091)
location: region:2651-3091:-1
so has part: feature:2651-3091:-1:exon
subclass of: SO_0000010

position:2651:-1
position: 2651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3091:-1
position: 3091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2651-3091:-1:exon

J9260_RS18405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18405
old locus tag: J9260_18400
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEITIKSAAEMAKVSRNTIYQAIRDGRMSRSPSGKVDSSEVLRVFGNPSDRLTRQEEREHIEHLKTQQQNLTPLDMMSAEKEALYQARIKALEDTLRQTQEREQQHIEREEWHRRQIDKLTDAIKLLEAPKASAKPKALFDRLFGG
SIO_010081: J9260_RS18405
subclass of: SO_0000673
so part of: J9260_RS18405
location: complement(2651..3091)
location: region:2651-3091:-1
so has part: feature:2651-3091:-1:exon

WP_210220932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2651-3091:-1:exon

J9260_RS18410
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18410
old locus tag: J9260_18405
so part of: sequence
location: complement(3223..3528)
location: region:3223-3528:-1
so has part: feature:3223-3528:-1:exon
subclass of: SO_0000010

position:3223:-1
position: 3223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3528:-1
position: 3528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3223-3528:-1:exon

J9260_RS18410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18410
old locus tag: J9260_18405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706906.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0030261 - chromosome condensation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MNKSEIIRNLSYRLSDMPTADVDRAVNLLLDLLGSTIAAGNRCEVRDFGVFSRHTHRARTGRNPRTGGAVDVPARYSVHFKPGKELRKRVDDAKGDFQIQD
SIO_010081: J9260_RS18410
subclass of: SO_0000673
so part of: J9260_RS18410
location: complement(3223..3528)
location: region:3223-3528:-1
so has part: feature:3223-3528:-1:exon

WP_210220933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3223-3528:-1:exon

J9260_RS18415
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18415
old locus tag: J9260_18410
so part of: sequence
location: 3842..5230
location: region:3842-5230:1
so has part: feature:3842-5230:1:exon
subclass of: SO_0000010

position:3842:1
position: 3842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5230:1
position: 5230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3842-5230:1:exon

J9260_RS18415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18415
old locus tag: J9260_18410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014170117.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRINNTYIKTGYFWLPNNSEKKIPGVLTIKNGGGIELEVIDLFKDNIKSLNGEDDFNRIIGHIEDDGLVTLDDCFYTTKSISFGGISKSKICINKVLSGVAYDAQEEVTFESLSFSVDCFNEWVSISGIKVENNWETNTTSINYSPPENIKIYLNNGMSLEIYFSYTLPTASNVSEVKITQNALFKIKSTFPTPLNKFIEIAHKLTNLMCFAIDDIVTLQDVTATSLEIYREYSNGKKHLIPIKVYYKSIPFTEKAVKKSWHQMLFVFNTIKSNFQDVVNNWLDAYEVIDPALNLYFSVKTGSQKYIDSQFLSLVQGLETYHRRTNSDTIMHSSEFDNLVSTLVDFCPESHKEWLQGRLKHGNEINLGQRIKKTIEPFKSLFGNSKDRNKLIRKIVDTRNYLTHYSKELRDSAATDDELWIICQKMEVILQLHFLKVIGFNDSEIHDVVQNSRPMHYKLKEI
SIO_010081: J9260_RS18415
subclass of: SO_0000673
so part of: J9260_RS18415
location: 3842..5230
location: region:3842-5230:1
so has part: feature:3842-5230:1:exon

WP_210220934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3842-5230:1:exon

J9260_RS18420
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18420
old locus tag: J9260_18415
so part of: sequence
location: 6493..7665
location: region:6493-7665:1
so has part: feature:6493-7665:1:exon
subclass of: SO_0000010

position:6493:1
position: 6493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7665:1
position: 7665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6493-7665:1:exon

J9260_RS18420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18420
old locus tag: J9260_18415
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MKELKVVKSNRLVEASYRLTEIEHQIILYAICRSRNEGVALSPDHPLTIRAVEFAQQFGTNPAKVYGQLKTAMDTLFSRHLVIHDIDEETGKPEVIKIRWINEASYVDGSGNIKIVFSRRIIPYISQLEIKFTPYLLKQISKMTSVHAIRIYELLAQYVTYGKREISIDWLKNTLQLEGEYPRIYDLKERVIDVAVDQINKYSDINVNYTNIKTGRAITGFLFTINKTKPKIDEAAKVENNNTDFKTLLAFVPDAHRAKKSVIAALESSEKKHGFDYVKRNILYSNANAAKSYAGFLNSALKQDWGHDLELEQKEAIEGKQTVHAAEKLNKMAAELRELAGEIKSLQHNSKLTHDAALWNQAETLKQKYFALETLYQAAKQNEEVTNPTL
SIO_010081: J9260_RS18420
subclass of: SO_0000673
so part of: J9260_RS18420
location: 6493..7665
location: region:6493-7665:1
so has part: feature:6493-7665:1:exon

WP_210220935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6493-7665:1:exon

J9260_RS18425
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18425
old locus tag: J9260_18420
so part of: sequence
location: 7750..8400
location: region:7750-8400:1
so has part: feature:7750-8400:1:exon
subclass of: SO_0000010

position:7750:1
position: 7750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8400:1
position: 8400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7750-8400:1:exon

J9260_RS18425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18425
old locus tag: J9260_18420
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTHDSNLRPSVRKFETGDIPGAADSDTTVSTPNKPTPGSGETFAAKLLRAAGRLTPSLPPSPGTRNRGDVHQENLPRWPAPNVRGVSPAPSRPNVRGVYAPIAGELMQEALAGVRRHVPAVLSPHFETLYSAWLAELLAGVPVLAARPAQRFLHLRIRAGLRVAILPGGLHALAGLFRAKAFAQGILRANPRYTGRPPYPRFILADGGKHEPREP
SIO_010081: J9260_RS18425
subclass of: SO_0000673
so part of: J9260_RS18425
location: 7750..8400
location: region:7750-8400:1
so has part: feature:7750-8400:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7750-8400:1:exon

J9260_RS18430
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18430
old locus tag: J9260_18425
so part of: sequence
location: 8426..8710
location: region:8426-8710:1
so has part: feature:8426-8710:1:exon
subclass of: SO_0000010

position:8426:1
position: 8426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8710:1
position: 8710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8426-8710:1:exon

J9260_RS18430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18430
old locus tag: J9260_18425
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQMYPDDKRRRQELAARVAAEIPAISPQIGADALAVVYEWLEANGVETLPSGHYRPFFVGALVRLLGFCRGGWKSTDFRECLRVTVWRLLGFRQ
SIO_010081: J9260_RS18430
subclass of: SO_0000673
so part of: J9260_RS18430
location: 8426..8710
location: region:8426-8710:1
so has part: feature:8426-8710:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8426-8710:1:exon

J9260_RS18435
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18435
old locus tag: J9260_18430
so part of: sequence
location: complement(8783..9217)
location: region:8783-9217:-1
so has part: feature:8783-9217:-1:exon
subclass of: SO_0000010

position:8783:-1
position: 8783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9217:-1
position: 9217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8783-9217:-1:exon

J9260_RS18435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18435
old locus tag: J9260_18430
inference: COORDINATES: protein motif:HMM:TIGR00305.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MTTTQKRLVLDTNTLISAFVNESSASASFFRQVRRTHELLASTETIAELVKTIQKNKFNKSFEGREEKRKGLVIDYTDLVTVVIITQVSTECRDPKDNKFLSLALSGGADFIISGDKDLTVLNPYHGIRILTMREYADEVGIVL
SIO_010081: J9260_RS18435
subclass of: SO_0000673
so part of: J9260_RS18435
location: complement(8783..9217)
location: region:8783-9217:-1
so has part: feature:8783-9217:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8783-9217:-1:exon

J9260_RS18440
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18440
old locus tag: J9260_18435
so part of: sequence
location: complement(9231..9746)
location: region:9231-9746:-1
so has part: feature:9231-9746:-1:exon
subclass of: SO_0000010

position:9231:-1
position: 9231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9746:-1
position: 9746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9231-9746:-1:exon

J9260_RS18440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18440
old locus tag: J9260_18435
inference: COORDINATES: protein motif:HMM:TIGR01552.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MQVLPSLEVKNKFGKFSTIVDRGEIVTVTKHGEPTMVVLPVRFAQEIQRALRRYYVTEKVKVSDGILEWLVELPLSEETATPAPAFDEEAEKQKIREMVAKELGIPVPKPSTREAALAAFDRYEEEALKNKQPPMTDEEEAEFMKLVDEAREEVWQEQQAEKAKLPVSASH
SIO_010081: J9260_RS18440
subclass of: SO_0000673
so part of: J9260_RS18440
location: complement(9231..9746)
location: region:9231-9746:-1
so has part: feature:9231-9746:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9231-9746:-1:exon

J9260_RS18445
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18445
old locus tag: J9260_18440
so part of: sequence
location: complement(9810..10250)
location: region:9810-10250:-1
so has part: feature:9810-10250:-1:exon
subclass of: SO_0000010

position:9810:-1
position: 9810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10250:-1
position: 10250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9810-10250:-1:exon

J9260_RS18445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18445
old locus tag: J9260_18440
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEITIKSAAEMAKVSRNTIYQAIRDGRMSRSPSGKVDSSEVLRVFGNPSDRLTRQEEREHIEHLKTQQQNLTPLDMMSAEKEALYQARIKALEDTLRQTQEREQQHIEREEWHRRQIDKLTDAIKLLEAPKASAKPKALFDRLFGG
SIO_010081: J9260_RS18445
subclass of: SO_0000673
so part of: J9260_RS18445
location: complement(9810..10250)
location: region:9810-10250:-1
so has part: feature:9810-10250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9810-10250:-1:exon

J9260_RS18450
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18450
old locus tag: J9260_18445
so part of: sequence
location: complement(10382..10687)
location: region:10382-10687:-1
so has part: feature:10382-10687:-1:exon
subclass of: SO_0000010

position:10382:-1
position: 10382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10687:-1
position: 10687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10382-10687:-1:exon

J9260_RS18450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18450
old locus tag: J9260_18445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706906.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0030261 - chromosome condensation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MNKSEIIRNLSYRLSDMPTADVDRAVNLLLDLLGSTIAAGNRCEVRDFGVFSRHTHRARTGRNPRTGGAVDVPARYSVHFKPGKELRKRVDDAKGDFQIQD
SIO_010081: J9260_RS18450
subclass of: SO_0000673
so part of: J9260_RS18450
location: complement(10382..10687)
location: region:10382-10687:-1
so has part: feature:10382-10687:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10382-10687:-1:exon

J9260_RS18455
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18455
old locus tag: J9260_18450
so part of: sequence
location: 11001..12389
location: region:11001-12389:1
so has part: feature:11001-12389:1:exon
subclass of: SO_0000010

position:11001:1
position: 11001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12389:1
position: 12389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11001-12389:1:exon

J9260_RS18455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18455
old locus tag: J9260_18450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014170117.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRINNTYIKTGYFWLPNNSEKKIPGVLTIKNGGGIELEVIDLFKDNIKSLNGEDDFNRIIGHIEDDGLVTLDDCFYTTKSISFGGISKSKICINKVLSGVAYDAQEEVTFESLSFSVDCFNEWVSISGIKVENNWETNTTSINYSPPENIKIYLNNGMSLEIYFSYTLPTASNVSEVKITQNALFKIKSTFPTPLNKFIEIAHKLTNLMCFAIDDIVTLQDVTATSLEIYREYSNGKKHLIPIKVYYKSIPFTEKAVKKSWHQMLFVFNTIKSNFQDVVNNWLDAYEVIDPALNLYFSVKTGSQKYIDSQFLSLVQGLETYHRRTNSDTIMHSSEFDNLVSTLVDFCPESHKEWLQGRLKHGNEINLGQRIKKTIEPFKSLFGNSKDRNKLIRKIVDTRNYLTHYSKELRDSAATDDELWIICQKMEVILQLHFLKVIGFNDSEIHDVVQNSRPMHYKLKEI
SIO_010081: J9260_RS18455
subclass of: SO_0000673
so part of: J9260_RS18455
location: 11001..12389
location: region:11001-12389:1
so has part: feature:11001-12389:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11001-12389:1:exon