Thiothrix unzii strain A1 plasmid pTunz5, complete sequence.
type: Entry
definition: Thiothrix unzii strain A1 plasmid pTunz5, complete sequence.
sequence version: NZ_CP072797.1
sequence date: 2023-05-07
sequence: sequence
division: CON
label: NZ_CP072797.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18614033
keyword: RefSeq
source: Thiothrix unzii
organism: Thiothrix unzii
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP072797.1.\nBacteria and source DNA available from Dr. Margarita Grabovich\n(margarita_grabov@mail.ru).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-MAR-2021\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 448.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 04:54:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,728\nCDSs (total) :: 3,673\nGenes (coding) :: 3,656\nCDSs (with protein) :: 3,656\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 7 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 1 of 17\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14837
topology: circular
so has quality: SO_0000988
location: 1..14837
location: region:1-14837:1
RO_0002162: 111769

NZ_CP072797
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18614033
type: BioSample
SIO_000068: biosample

1
title: Genomics, taxonomy and metabolism of representatives of sulfur bacteria of the genus Thiothrix: Thiothrix fructosivorans QT, Thiothrix unzii A1T and three new species, Thiothrix subterranea sp. nov., Thiothrix litoralis sp. nov. and 'Candidatus Thiothrix anitrata' sp. nov
author: Ravin, N.V.
author: Smolyakov, D.
author: Rudenko, T.S.
author: Mardanov, A.V.
author: Beletsky, A.V.
author: Markov, N.D.
author: Fomenkov, A.I.
author: Roberts, R.J.
author: Karnachuk, O.V.
author: Novikov, A.
author: Grabovich, M.Y.
journal: Unpublished

2
title: Direct Submission
author: Ravin, N.V.
author: Beletsky, A.V.
author: Mardanov, A.V.
journal: Submitted (05-APR-2021) Department of molecular biology of microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-let Oktyabrya, bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14837:1
position: 14837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14837:1:source
so part of: sequence
organism: Thiothrix unzii
mol type: genomic DNA
strain: A1
isolation source: Isolated from activated-sludge plants
type material: type strain of Thiothrix unzii
plasmid: pTunz5

111769
type: Taxonomy
SIO_000068: taxonomy

J9260_RS18280
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18280
old locus tag: J9260_18275
so part of: sequence
location: join(14474..14837,1..71)
location: region:1-14837:1
so has part: feature:14474-14837:1:exon
so has part: feature:1-71:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:14474-14837:1:exon

position:14474:1
position: 14474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-71:1:exon

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

J9260_RS18280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18280
old locus tag: J9260_18275
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MNQEKKRVIFDTNALISAVIKPDSFPSFVFEYAKTHEHLFYSSATLAELRRVVDLPKFETYRRRFGDNREGFFLSYQEQATEANPAFTVTDCRDKDDNKFLALALSVDAEIIVSGDSDLLVLNPYQNIRILTIRQYAQDRGLAD
SIO_010081: J9260_RS18280
subclass of: SO_0000673
so part of: J9260_RS18280
location: join(14474..14837,1..71)
location: region:1-14837:1
so has part: feature:14474-14837:1:exon
so has part: feature:1-71:1:exon

WP_210220926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14474-14837:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-71:1:exon

J9260_RS18285
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18285
old locus tag: J9260_18280
so part of: sequence
location: complement(186..515)
location: region:186-515:-1
so has part: feature:186-515:-1:exon
subclass of: SO_0000010

position:186:-1
position: 186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:515:-1
position: 515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186-515:-1:exon

J9260_RS18285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18285
old locus tag: J9260_18280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQGNHDTISQLALIMQMYPDDKRRRQELAARVAAEIPAISPQIGADALAVVYEWLEANGAATSPTGHYRPFFVGAAVRLLGFCRGGWKSTNVRECLRVAVWRLLGFRQ
SIO_010081: J9260_RS18285
subclass of: SO_0000673
so part of: J9260_RS18285
location: complement(186..515)
location: region:186-515:-1
so has part: feature:186-515:-1:exon

WP_210220917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:186-515:-1:exon

J9260_RS18290
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18290
old locus tag: J9260_18285
so part of: sequence
location: complement(496..912)
location: region:496-912:-1
so has part: feature:496-912:-1:exon
subclass of: SO_0000010

position:496:-1
position: 496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:912:-1
position: 912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:496-912:-1:exon

J9260_RS18290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18290
old locus tag: J9260_18285
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MACPQCTGVSPAPSRPNVRGVYAPIAGELMQEALTGVRRHVPAVLSPHFETLYSAWLAELLAGVPVLAARPAQRFLHLRIRAGLRVAILPGGLHALAGLFRAKAFAQGILRANPRYTGRPPYPRFILADGGKHEPREP
SIO_010081: J9260_RS18290
subclass of: SO_0000673
so part of: J9260_RS18290
location: complement(496..912)
location: region:496-912:-1
so has part: feature:496-912:-1:exon

WP_210220927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:496-912:-1:exon

J9260_RS18295
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18295
old locus tag: J9260_18290
so part of: sequence
location: complement(1243..2370)
location: region:1243-2370:-1
so has part: feature:1243-2370:-1:exon
subclass of: SO_0000010

position:1243:-1
position: 1243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2370:-1
position: 2370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1243-2370:-1:exon

J9260_RS18295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18295
old locus tag: J9260_18290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706474.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MFDNENQILIKKSNDLIEARYRLTLGEQRLVLLLASQIRKDDKDFNYYEIKISDFAEMFGLKTDKSLYEKVEKIAGDLLGKKLYLKNDGKSFEGTVWLSYVKYVSGSGTIKLRFDDCLKPYLLQLKHSINGFTQYKLHTVMSFKSAYSIRLYELLKMEVWKSEKLKSTQFEKNFSLDEYRRILGVDKNAYPIFADFRKRVIDTTVLEISEQTELNISETKYIKTGRKITGITFIVKIRQTDEIKTLQLEMEDPPKEQTHPIVERLISLGFAVETAKRYKTKYGIKRIERNIAYTLAKQQEGAVKDIPAYLNMAIKEDIGGGWDVAKTKAAEEKTKQQTVSNQREKQAELAHLQKMAEMAGVPLETLLPKQSKGGN
SIO_010081: J9260_RS18295
subclass of: SO_0000673
so part of: J9260_RS18295
location: complement(1243..2370)
location: region:1243-2370:-1
so has part: feature:1243-2370:-1:exon

WP_210220919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1243-2370:-1:exon

J9260_RS18300
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18300
old locus tag: J9260_18295
so part of: sequence
location: 3381..3899
location: region:3381-3899:1
so has part: feature:3381-3899:1:exon
subclass of: SO_0000010

position:3381:1
position: 3381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3899:1
position: 3899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3381-3899:1:exon

J9260_RS18300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18300
old locus tag: J9260_18295
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDCLLVGGAPSVGKSHLIHGLALWILNKPGFLLASAKSYNSNALNSLNNNPFVDFMAVIDGVNTFNKKIRIIVNSATDDVNIINNFKGFFDANGGYDILISSVRDGDLRNGNFWPRQEFFQIMNLNSISNLILELPLAKVTRRRNSQSAYNWYETETSRLAQHILSRNPFNL
SIO_010081: J9260_RS18300
subclass of: SO_0000673
so part of: J9260_RS18300
location: 3381..3899
location: region:3381-3899:1
so has part: feature:3381-3899:1:exon

WP_210220920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3381-3899:1:exon

J9260_RS18305
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18305
old locus tag: J9260_18300
so part of: sequence
location: complement(4118..4630)
location: region:4118-4630:-1
so has part: feature:4118-4630:-1:exon
subclass of: SO_0000010

position:4118:-1
position: 4118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4630:-1
position: 4630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4118-4630:-1:exon

J9260_RS18305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18305
old locus tag: J9260_18300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0030246 - carbohydrate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: RICIN domain-containing protein
translation: MKLQVKHSKKYLAKDNNERVIQNIKADEWMFVSDNNEEINQKSGDFGRIVLKDSKDPSRCLQPSSNFPRDGWLIDLAPVQIGNDSQLWHFILEDEDGFYVIENKNERREDGKNIKITQACMDVCEAKMSDGIIVIVYHINGGTGSGNQRWKIINTSDDIKLANFAHPPKL
SIO_010081: J9260_RS18305
subclass of: SO_0000673
so part of: J9260_RS18305
location: complement(4118..4630)
location: region:4118-4630:-1
so has part: feature:4118-4630:-1:exon

WP_210220921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4118-4630:-1:exon

J9260_RS18310
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18310
old locus tag: J9260_18305
so part of: sequence
location: complement(4664..5014)
location: region:4664-5014:-1
so has part: feature:4664-5014:-1:exon
subclass of: SO_0000010

position:4664:-1
position: 4664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5014:-1
position: 5014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4664-5014:-1:exon

J9260_RS18310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18310
old locus tag: J9260_18305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKKKLNGRFYFELTTNYNLIGEYSSNYSQHSEPESASRIYSEDEDKDYDFTGEYLTVWHEDGDSIIANLNITAKPNCKNIYSLVWKSTKDQNVIYFTGEAMLYRNAIIGDYRPGR
SIO_010081: J9260_RS18310
subclass of: SO_0000673
so part of: J9260_RS18310
location: complement(4664..5014)
location: region:4664-5014:-1
so has part: feature:4664-5014:-1:exon

WP_210220922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4664-5014:-1:exon

J9260_RS18830
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18830
so part of: sequence
location: 5046..5177
location: region:5046-5177:1
so has part: feature:5046-5177:1:exon
subclass of: SO_0000010

position:5046:1
position: 5046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5177:1
position: 5177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5046-5177:1:exon

J9260_RS18830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18830
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNVRIDGRSGKLIDRSDELSPRPSSNVLLAHYQPMSSGTTVE
SIO_010081: J9260_RS18830
subclass of: SO_0000673
so part of: J9260_RS18830
location: 5046..5177
location: region:5046-5177:1
so has part: feature:5046-5177:1:exon

WP_281419502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5046-5177:1:exon

J9260_RS18315
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18315
old locus tag: J9260_18310
so part of: sequence
location: complement(5414..5626)
location: region:5414-5626:-1
so has part: feature:5414-5626:-1:exon
subclass of: SO_0000010

position:5414:-1
position: 5414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5626:-1
position: 5626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5414-5626:-1:exon

J9260_RS18315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18315
old locus tag: J9260_18310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDGIIVIIVIIAIIAAIKSGNRGSGSIGGIYDGDMKSMKCPECRSTDIGYYISSSINGADYKCNKCGNKW
SIO_010081: J9260_RS18315
subclass of: SO_0000673
so part of: J9260_RS18315
location: complement(5414..5626)
location: region:5414-5626:-1
so has part: feature:5414-5626:-1:exon

WP_210220923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5414-5626:-1:exon

J9260_RS18320
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18320
old locus tag: J9260_18315
so part of: sequence
location: 6151..6570
location: region:6151-6570:1
so has part: feature:6151-6570:1:exon
subclass of: SO_0000010

position:6151:1
position: 6151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6570:1
position: 6570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6151-6570:1:exon

J9260_RS18320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18320
old locus tag: J9260_18315
inference: COORDINATES: protein motif:HMM:NF038291.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MEISILEASKSLKVGRSTIYKRIASGELSKTPNGKIDTSELFRVFGSSPKTVSQDTPKTPVDNFQDIENHPLYKAQADKVRMLEEALNQACDREQWQRGQIEKLTDTIKLLEAPRTPAPPTPPTQAERLKGFIDRVLGR
SIO_010081: J9260_RS18320
subclass of: SO_0000673
so part of: J9260_RS18320
location: 6151..6570
location: region:6151-6570:1
so has part: feature:6151-6570:1:exon

WP_210220924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6151-6570:1:exon

J9260_RS18325
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18325
old locus tag: J9260_18320
so part of: sequence
location: 6636..7040
location: region:6636-7040:1
so has part: feature:6636-7040:1:exon
subclass of: SO_0000010

position:6636:1
position: 6636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7040:1
position: 7040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6636-7040:1:exon

J9260_RS18325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18325
old locus tag: J9260_18320
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTRQGITPDILPAGLSPIEKAKVSALMRKMGRDDFLLYACRLALGVKPTFRTTRPTTKTARKEAIVEKIERNSGVTLRKSAFLDGWLDQVADLPDPHPDIADMTDDELLSFVNAEVKQYRAEQRALESTQASH
SIO_010081: J9260_RS18325
subclass of: SO_0000673
so part of: J9260_RS18325
location: 6636..7040
location: region:6636-7040:1
so has part: feature:6636-7040:1:exon

WP_210220925.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6636-7040:1:exon

J9260_RS18330
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18330
old locus tag: J9260_18325
so part of: sequence
location: 7055..7489
location: region:7055-7489:1
so has part: feature:7055-7489:1:exon
subclass of: SO_0000010

position:7055:1
position: 7055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7489:1
position: 7489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7055-7489:1:exon

J9260_RS18330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18330
old locus tag: J9260_18325
inference: COORDINATES: protein motif:HMM:TIGR00305.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MNQEKKRVIFDTNALISAVIKPDSFPSFVFEYAKTHEHLFYSSATLAELRRVVDLPKFETYRRRFGDNREGFFLSYQEQATEANPAFTVTDCRDKDDNKFLALALSVDAEIIVSGDSDLLVLNPYQNIRILTIRQYAQDRGLAD
SIO_010081: J9260_RS18330
subclass of: SO_0000673
so part of: J9260_RS18330
location: 7055..7489
location: region:7055-7489:1
so has part: feature:7055-7489:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7055-7489:1:exon

J9260_RS18335
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18335
old locus tag: J9260_18330
so part of: sequence
location: complement(7604..7933)
location: region:7604-7933:-1
so has part: feature:7604-7933:-1:exon
subclass of: SO_0000010

position:7604:-1
position: 7604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7933:-1
position: 7933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7604-7933:-1:exon

J9260_RS18335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18335
old locus tag: J9260_18330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQGNHDTISQLALIMQMYPDDKRRRQELAARVAAEIPAISPQIGADALAVVYEWLEANGAATSPTGHYRPFFVGAAVRLLGFCRGGWKSTNVRECLRVAVWRLLGFRQ
SIO_010081: J9260_RS18335
subclass of: SO_0000673
so part of: J9260_RS18335
location: complement(7604..7933)
location: region:7604-7933:-1
so has part: feature:7604-7933:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7604-7933:-1:exon

J9260_RS18340
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18340
old locus tag: J9260_18335
so part of: sequence
location: complement(7914..8564)
location: region:7914-8564:-1
so has part: feature:7914-8564:-1:exon
subclass of: SO_0000010

position:7914:-1
position: 7914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8564:-1
position: 8564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7914-8564:-1:exon

J9260_RS18340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18340
old locus tag: J9260_18335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTHDSNLRPSVRKFETGDIPGTAAADTTVSTPNKPTLGSGETFAAKLLRVAGRLTPSLPPSPDTRNRGDVHQENLPRWPAPNVRGVSPAPSRPNVRGVYAPIAGELMQEALTGVRRHVPAVLSPHFETLYSAWLAELLAGVPVLAARPAQRFLHLRIRAGLRVAILPGGLHALAGLFRAKAFAQGILRANPRYTGRPPYPRFILADGGKHEPREP
SIO_010081: J9260_RS18340
subclass of: SO_0000673
so part of: J9260_RS18340
location: complement(7914..8564)
location: region:7914-8564:-1
so has part: feature:7914-8564:-1:exon

WP_210220918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7914-8564:-1:exon

J9260_RS18345
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18345
old locus tag: J9260_18340
so part of: sequence
location: complement(8662..9789)
location: region:8662-9789:-1
so has part: feature:8662-9789:-1:exon
subclass of: SO_0000010

position:8662:-1
position: 8662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9789:-1
position: 9789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8662-9789:-1:exon

J9260_RS18345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18345
old locus tag: J9260_18340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706474.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MFDNENQILIKKSNDLIEARYRLTLGEQRLVLLLASQIRKDDKDFNYYEIKISDFAEMFGLKTDKSLYEKVEKIAGDLLGKKLYLKNDGKSFEGTVWLSYVKYVSGSGTIKLRFDDCLKPYLLQLKHSINGFTQYKLHTVMSFKSAYSIRLYELLKMEVWKSEKLKSTQFEKNFSLDEYRRILGVDKNAYPIFADFRKRVIDTTVLEISEQTELNISETKYIKTGRKITGITFIVKIRQTDEIKTLQLEMEDPPKEQTHPIVERLISLGFAVETAKRYKTKYGIKRIERNIAYTLAKQQEGAVKDIPAYLNMAIKEDIGGGWDVAKTKAAEEKTKQQTVSNQREKQAELAHLQKMAEMAGVPLETLLPKQSKGGN
SIO_010081: J9260_RS18345
subclass of: SO_0000673
so part of: J9260_RS18345
location: complement(8662..9789)
location: region:8662-9789:-1
so has part: feature:8662-9789:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8662-9789:-1:exon

J9260_RS18350
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18350
old locus tag: J9260_18345
so part of: sequence
location: 10800..11318
location: region:10800-11318:1
so has part: feature:10800-11318:1:exon
subclass of: SO_0000010

position:10800:1
position: 10800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11318:1
position: 11318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10800-11318:1:exon

J9260_RS18350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18350
old locus tag: J9260_18345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDCLLVGGAPSVGKSHLIHGLALWILNKPGFLLASAKSYNSNALNSLNNNPFVDFMAVIDGVNTFNKKIRIIVNSATDDVNIINNFKGFFDANGGYDILISSVRDGDLRNGNFWPRQEFFQIMNLNSISNLILELPLAKVTRRRNSQSAYNWYETETSRLAQHILSRNPFNL
SIO_010081: J9260_RS18350
subclass of: SO_0000673
so part of: J9260_RS18350
location: 10800..11318
location: region:10800-11318:1
so has part: feature:10800-11318:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10800-11318:1:exon

J9260_RS18355
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18355
old locus tag: J9260_18350
so part of: sequence
location: complement(11537..12049)
location: region:11537-12049:-1
so has part: feature:11537-12049:-1:exon
subclass of: SO_0000010

position:11537:-1
position: 11537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12049:-1
position: 12049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11537-12049:-1:exon

J9260_RS18355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18355
old locus tag: J9260_18350
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0030246 - carbohydrate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: RICIN domain-containing protein
translation: MKLQVKHSKKYLAKDNNERVIQNIKADEWMFVSDNNEEINQKSGDFGRIVLKDSKDPSRCLQPSSNFPRDGWLIDLAPVQIGNDSQLWHFILEDEDGFYVIENKNERREDGKNIKITQACMDVCEAKMSDGIIVIVYHINGGTGSGNQRWKIINTSDDIKLANFAHPPKL
SIO_010081: J9260_RS18355
subclass of: SO_0000673
so part of: J9260_RS18355
location: complement(11537..12049)
location: region:11537-12049:-1
so has part: feature:11537-12049:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11537-12049:-1:exon

J9260_RS18360
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18360
old locus tag: J9260_18355
so part of: sequence
location: complement(12083..12433)
location: region:12083-12433:-1
so has part: feature:12083-12433:-1:exon
subclass of: SO_0000010

position:12083:-1
position: 12083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12433:-1
position: 12433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12083-12433:-1:exon

J9260_RS18360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18360
old locus tag: J9260_18355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKKKLNGRFYFELTTNYNLIGEYSSNYSQHSEPESASRIYSEDEDKDYDFTGEYLTVWHEDGDSIIANLNITAKPNCKNIYSLVWKSTKDQNVIYFTGEAMLYRNAIIGDYRPGR
SIO_010081: J9260_RS18360
subclass of: SO_0000673
so part of: J9260_RS18360
location: complement(12083..12433)
location: region:12083-12433:-1
so has part: feature:12083-12433:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12083-12433:-1:exon

J9260_RS18835
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18835
so part of: sequence
location: 12465..12596
location: region:12465-12596:1
so has part: feature:12465-12596:1:exon
subclass of: SO_0000010

position:12465:1
position: 12465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12596:1
position: 12596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12465-12596:1:exon

J9260_RS18835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18835
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNVRIDGRSGKLIDRSDELSPRPSSNVLLAHYQPMSSGTTVE
SIO_010081: J9260_RS18835
subclass of: SO_0000673
so part of: J9260_RS18835
location: 12465..12596
location: region:12465-12596:1
so has part: feature:12465-12596:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12465-12596:1:exon

J9260_RS18365
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18365
old locus tag: J9260_18360
so part of: sequence
location: complement(12833..13045)
location: region:12833-13045:-1
so has part: feature:12833-13045:-1:exon
subclass of: SO_0000010

position:12833:-1
position: 12833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13045:-1
position: 13045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12833-13045:-1:exon

J9260_RS18365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18365
old locus tag: J9260_18360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDGIIVIIVIIAIIAAIKSGNRGSGSIGGIYDGDMKSMKCPECRSTDIGYYISSSINGADYKCNKCGNKW
SIO_010081: J9260_RS18365
subclass of: SO_0000673
so part of: J9260_RS18365
location: complement(12833..13045)
location: region:12833-13045:-1
so has part: feature:12833-13045:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12833-13045:-1:exon

J9260_RS18370
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18370
old locus tag: J9260_18365
so part of: sequence
location: 13570..13989
location: region:13570-13989:1
so has part: feature:13570-13989:1:exon
subclass of: SO_0000010

position:13570:1
position: 13570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13989:1
position: 13989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13570-13989:1:exon

J9260_RS18370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18370
old locus tag: J9260_18365
inference: COORDINATES: protein motif:HMM:NF038291.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MEISILEASKSLKVGRSTIYKRIASGELSKTPNGKIDTSELFRVFGSSPKTVSQDTPKTPVDNFQDIENHPLYKAQADKVRMLEEALNQACDREQWQRGQIEKLTDTIKLLEAPRTPAPPTPPTQAERLKGFIDRVLGR
SIO_010081: J9260_RS18370
subclass of: SO_0000673
so part of: J9260_RS18370
location: 13570..13989
location: region:13570-13989:1
so has part: feature:13570-13989:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13570-13989:1:exon

J9260_RS18375
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18375
old locus tag: J9260_18370
so part of: sequence
location: 14055..14459
location: region:14055-14459:1
so has part: feature:14055-14459:1:exon
subclass of: SO_0000010

position:14055:1
position: 14055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14459:1
position: 14459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14055-14459:1:exon

J9260_RS18375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18375
old locus tag: J9260_18370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTRQGITPDILPAGLSPIEKAKVSALMRKMGRDDFLLYACRLALGVKPTFRTTRPTTKTARKEAIVEKIERNSGVTLRKSAFLDGWLDQVADLPDPHPDIADMTDDELLSFVNAEVKQYRAEQRALESTQASH
SIO_010081: J9260_RS18375
subclass of: SO_0000673
so part of: J9260_RS18375
location: 14055..14459
location: region:14055-14459:1
so has part: feature:14055-14459:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14055-14459:1:exon