Thiothrix unzii strain A1 plasmid pTunz7, complete sequence.
type: Entry
definition: Thiothrix unzii strain A1 plasmid pTunz7, complete sequence.
sequence version: NZ_CP072794.1
sequence date: 2023-05-07
sequence: sequence
division: CON
label: NZ_CP072794.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18614033
keyword: RefSeq
source: Thiothrix unzii
organism: Thiothrix unzii
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP072794.1.\nBacteria and source DNA available from Dr. Margarita Grabovich\n(margarita_grabov@mail.ru).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-MAR-2021\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 448.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 04:54:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,728\nCDSs (total) :: 3,673\nGenes (coding) :: 3,656\nCDSs (with protein) :: 3,656\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 7 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 1 of 17\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14102
topology: circular
so has quality: SO_0000988
location: 1..14102
location: region:1-14102:1
RO_0002162: 111769

NZ_CP072794
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18614033
type: BioSample
SIO_000068: biosample

1
title: Genomics, taxonomy and metabolism of representatives of sulfur bacteria of the genus Thiothrix: Thiothrix fructosivorans QT, Thiothrix unzii A1T and three new species, Thiothrix subterranea sp. nov., Thiothrix litoralis sp. nov. and 'Candidatus Thiothrix anitrata' sp. nov
author: Ravin, N.V.
author: Smolyakov, D.
author: Rudenko, T.S.
author: Mardanov, A.V.
author: Beletsky, A.V.
author: Markov, N.D.
author: Fomenkov, A.I.
author: Roberts, R.J.
author: Karnachuk, O.V.
author: Novikov, A.
author: Grabovich, M.Y.
journal: Unpublished

2
title: Direct Submission
author: Ravin, N.V.
author: Beletsky, A.V.
author: Mardanov, A.V.
journal: Submitted (05-APR-2021) Department of molecular biology of microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-let Oktyabrya, bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14102:1
position: 14102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14102:1:source
so part of: sequence
organism: Thiothrix unzii
mol type: genomic DNA
strain: A1
isolation source: Isolated from activated-sludge plants
type material: type strain of Thiothrix unzii
plasmid: pTunz7

111769
type: Taxonomy
SIO_000068: taxonomy

J9260_RS17895
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17895
old locus tag: J9260_17890
so part of: sequence
location: complement(join(13586..14102,1..584))
location: region:1-14102:-1
so has part: feature:1-584:-1:exon
so has part: feature:13586-14102:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14102:-1
position: 14102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-584:-1:exon

position:584:-1
position: 584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13586-14102:-1:exon

position:13586:-1
position: 13586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

J9260_RS17895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17895
old locus tag: J9260_17890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706474.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MKLKVVKNTSPQVIRKSNELIEARYRLSIWEQRLILTLLANITKQDADFKRYHVRVADFAGMWQLDSDNSLYEKVQDAADSLVGKTVQLSDDPSVSETVSWLSYVRYKRGSGEIEMEFHSSLKPYLLQLQKHFTQYQLGHVVNFKNQYSIRIYELLKMEVFKHPDGSFVKDFKYDDLRALLGITDDEYTLFGNFKMRVISPAIAEICSHTDLNIEEVRYGKTGRKVTDITFVVKIRPVVEALQLQMEAPPKEHPIVDLLTSLGFAVETARKYKTRFGVKRIERNIGYAKAKQETGLVKDFPSFLNAAITEDMGGAWEVAQTKEVEVKTAKQAQAAKREEQAELAHLQKMAEMAGVPLDVLRPKAKS
SIO_010081: J9260_RS17895
subclass of: SO_0000673
so part of: J9260_RS17895
location: complement(join(13586..14102,1..584))
location: region:1-14102:-1
so has part: feature:1-584:-1:exon
so has part: feature:13586-14102:-1:exon

WP_210220849.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-584:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13586-14102:-1:exon

J9260_RS17900
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17900
old locus tag: J9260_17895
so part of: sequence
location: complement(608..919)
location: region:608-919:-1
so has part: feature:608-919:-1:exon
subclass of: SO_0000010

position:608:-1
position: 608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:919:-1
position: 919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608-919:-1:exon

J9260_RS17900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17900
old locus tag: J9260_17895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKKHTKQVLWGCAFSVVDGVGEKFPLCAFIYLQYLYIYEAFFLFIINTLYRKLLQKAGQLLQKAGQLLQKAGQLLQKAGQLLQKAGQLLQKAGQLLQIFDKK
SIO_010081: J9260_RS17900
subclass of: SO_0000673
so part of: J9260_RS17900
location: complement(608..919)
location: region:608-919:-1
so has part: feature:608-919:-1:exon

WP_210220850.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:608-919:-1:exon

J9260_RS17905
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17905
old locus tag: J9260_17900
so part of: sequence
location: complement(943..1473)
location: region:943-1473:-1
so has part: feature:943-1473:-1:exon
subclass of: SO_0000010

position:943:-1
position: 943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1473:-1
position: 1473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:943-1473:-1:exon

J9260_RS17905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17905
old locus tag: J9260_17900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MKWINHLAIAGATTALVAPALVPVALLGSTAPDWLEWALEKLGGRKVKHRGVTHVVLYWAGVLAFALGLWDFHGILAAFAYGGLTHVLADSLTVSGVPFTPNAERRFHLFGGRLRTGNTGEYGIAWGIVGVCFVLAVLFKPGGGSGWYPFFYDWHGLYQSGVVDAKEWKDNRLKFF
SIO_010081: J9260_RS17905
subclass of: SO_0000673
so part of: J9260_RS17905
location: complement(943..1473)
location: region:943-1473:-1
so has part: feature:943-1473:-1:exon

WP_210220851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:943-1473:-1:exon

J9260_RS18745
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18745
so part of: sequence
location: complement(2323..3063)
location: region:2323-3063:-1
so has part: feature:2323-3063:-1:exon
subclass of: SO_0000010

position:2323:-1
position: 2323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3063:-1
position: 3063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2323-3063:-1:exon

J9260_RS18745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008989866.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFLKIHRSKSQVRADGSPYAVPLYVTKTHRKGTVISEEAISTKRPILVTGAHDSGKSKWVERLHEHAGEIWGTKSKTAPLYLDTLRPLVAWSDEPDLEKWWEAKRLEEEKTDINNARAPWKSIKQYARAEALPDYCKDTGAVLFIDDAHKLAGRKLQIARKCVISSRLFVMAASEEQRLPPNLRNVVLRRDPQIFRLNSEVAYDATNLFMWAFLVACLAAGWWEAALVLGGLKALGSGRRATRAD
SIO_010081: J9260_RS18745
subclass of: SO_0000673
so part of: J9260_RS18745
location: complement(2323..3063)
location: region:2323-3063:-1
so has part: feature:2323-3063:-1:exon

WP_246499839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2323-3063:-1:exon

J9260_RS17915
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17915
old locus tag: J9260_17910
so part of: sequence
location: 3390..4037
location: region:3390-4037:1
so has part: feature:3390-4037:1:exon
subclass of: SO_0000010

position:3390:1
position: 3390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4037:1
position: 4037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3390-4037:1:exon

J9260_RS17915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17915
old locus tag: J9260_17910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706484.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MANYAYLRVSTDQQDLDNQRHGILEYANQNGITGVQFVEDSVSGKVKWRERRIGDLLLKTMQPGDTVIFAEISRMARSTLQVLEMLEHATTTNFHVHVAKQRMRFDDSMNSKITATVLGLAAEIEREFISLRTKEALAKRKADGMTLGRPKGKAETVKLDAHREEIKRYLAKDISKRAIAKLVDCSKSTLYNWLEREGLNKKKPKAKPKATETTP
SIO_010081: J9260_RS17915
subclass of: SO_0000673
so part of: J9260_RS17915
location: 3390..4037
location: region:3390-4037:1
so has part: feature:3390-4037:1:exon

WP_210220852.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3390-4037:1:exon

J9260_RS17920
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17920
old locus tag: J9260_17915
so part of: sequence
location: 4034..4288
location: region:4034-4288:1
so has part: feature:4034-4288:1:exon
subclass of: SO_0000010

position:4034:1
position: 4034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4288:1
position: 4288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4034-4288:1:exon

J9260_RS17920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17920
old locus tag: J9260_17915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020795154.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSETQQGYGSLEQQLKALENSVHTITTDPAASHWLKRAVTELWERDVVDALNDLDMLRDLLEAKHQAHVLTLKRMVMSDNGTRH
SIO_010081: J9260_RS17920
subclass of: SO_0000673
so part of: J9260_RS17920
location: 4034..4288
location: region:4034-4288:1
so has part: feature:4034-4288:1:exon

WP_210220853.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4034-4288:1:exon

J9260_RS17925
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17925
old locus tag: J9260_17920
so part of: sequence
location: complement(4834..5013)
location: region:4834-5013:-1
so has part: feature:4834-5013:-1:exon
subclass of: SO_0000010

position:4834:-1
position: 4834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5013:-1
position: 5013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4834-5013:-1:exon

J9260_RS17925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17925
old locus tag: J9260_17920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTALPRVRRSRTLNAVAIAVNGRGVGERRGLSVSGDRLEQLQPNRACLAGGQPLAFSPA
SIO_010081: J9260_RS17925
subclass of: SO_0000673
so part of: J9260_RS17925
location: complement(4834..5013)
location: region:4834-5013:-1
so has part: feature:4834-5013:-1:exon

WP_210220854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4834-5013:-1:exon

J9260_RS17930
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17930
old locus tag: J9260_17925
so part of: sequence
location: complement(5064..5300)
location: region:5064-5300:-1
so has part: feature:5064-5300:-1:exon
subclass of: SO_0000010

position:5064:-1
position: 5064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5300:-1
position: 5300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5064-5300:-1:exon

J9260_RS17930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17930
old locus tag: J9260_17925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHGTPKNKLVRVFLPLRAFTNTRNLSPTRALLKKQAAETLAKPLLFFLPRSGTTNREAALREAAHGTYRSRESTPPTL
SIO_010081: J9260_RS17930
subclass of: SO_0000673
so part of: J9260_RS17930
location: complement(5064..5300)
location: region:5064-5300:-1
so has part: feature:5064-5300:-1:exon

WP_210220855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5064-5300:-1:exon

J9260_RS17935
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17935
old locus tag: J9260_17930
so part of: sequence
location: 5500..5787
location: region:5500-5787:1
so has part: feature:5500-5787:1:exon
subclass of: SO_0000010

position:5500:1
position: 5500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5787:1
position: 5787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5500-5787:1:exon

J9260_RS17935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17935
old locus tag: J9260_17930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002353197.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLKDVAAVRPDFVGADFWLIRRGSLETIGQPTKAYSPYHIGVRVEQTGLILPDYLFYVFMHLHQSGQWRPLAHGTLELVHIRTDDVRNIALLAV
SIO_010081: J9260_RS17935
subclass of: SO_0000673
so part of: J9260_RS17935
location: 5500..5787
location: region:5500-5787:1
so has part: feature:5500-5787:1:exon

WP_210220856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5500-5787:1:exon

J9260_RS17940
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17940
old locus tag: J9260_17935
so part of: sequence
location: 5833..6243
location: region:5833-6243:1
so has part: feature:5833-6243:1:exon
subclass of: SO_0000010

position:5833:1
position: 5833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6243:1
position: 6243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5833-6243:1:exon

J9260_RS17940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17940
old locus tag: J9260_17935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIKIPSIQEQQRLIFEQATREAIRQLEQNLNAPTVQDLAIDESQYSTEHLLPEGRWKPPHADVAYAYIEQFKRHSDYKTDKAVAEFLGFRGNNAERRLRAYREGSESPPFGVWRRLLVATGRVPQEIIPVIAFMR
SIO_010081: J9260_RS17940
subclass of: SO_0000673
so part of: J9260_RS17940
location: 5833..6243
location: region:5833-6243:1
so has part: feature:5833-6243:1:exon

WP_210220857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5833-6243:1:exon

J9260_RS17945
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17945
old locus tag: J9260_17940
so part of: sequence
location: 6465..6671
location: region:6465-6671:1
so has part: feature:6465-6671:1:exon
subclass of: SO_0000010

position:6465:1
position: 6465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6671:1
position: 6671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6465-6671:1:exon

J9260_RS17945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17945
old locus tag: J9260_17940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTEHPHTYRVCIWPTGEWCYAADIGQFEYSRLGNYVTHQVVLVVLSGDDPAKLLQDYVTAEVQRLQA
SIO_010081: J9260_RS17945
subclass of: SO_0000673
so part of: J9260_RS17945
location: 6465..6671
location: region:6465-6671:1
so has part: feature:6465-6671:1:exon

WP_210220858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6465-6671:1:exon

J9260_RS17950
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17950
old locus tag: J9260_17945
so part of: sequence
location: 6668..6970
location: region:6668-6970:1
so has part: feature:6668-6970:1:exon
subclass of: SO_0000010

position:6668:1
position: 6668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6970:1
position: 6970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6668-6970:1:exon

J9260_RS17950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17950
old locus tag: J9260_17945
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDGNQFQDRYHIRFRGRRTTVTLDKILSELIAMSFGLTPDRADYHSTVQQWLQATLTDKLGENVPGGSHISQYARKYAIEEIARRELVEQLWDWRLQGG
SIO_010081: J9260_RS17950
subclass of: SO_0000673
so part of: J9260_RS17950
location: 6668..6970
location: region:6668-6970:1
so has part: feature:6668-6970:1:exon

WP_210220859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6668-6970:1:exon

J9260_RS17955
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
gene: glmS
locus tag: J9260_RS17955
old locus tag: J9260_17950
so part of: sequence
location: complement(7134..8966)
location: region:7134-8966:-1
so has part: feature:7134-8966:-1:exon
subclass of: SO_0000010

position:7134:-1
position: 7134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8966:-1
position: 8966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7134-8966:-1:exon

J9260_RS17955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
gene: glmS
locus tag: J9260_RS17955
old locus tag: J9260_17950
EC number: 2.6.1.16
inference: COORDINATES: protein motif:HMM:NF001484.0
GO function: GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO process: GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutamine--fructose-6-phosphate transaminase (isomerizing)
translation: MCGIVGFVSNKKLFKEGFNSLRSLEYRGYDSFGFGAVTKTGINMVKMVGAISDTDINDFSDLFDANVVIGHTRWATHGGVTKENSHPHISNDGKVGIVHNGVIANYSRLVSKNPQWTLLSETDTEVAANVISDSLLKNNENIISALENSLKILEGEFAICGIIKGRVDTIFAIKRKSPLAIGMLEDTMILSSDMSAFSEFSRSIDVMHLDDESIFLHTNNKTTLFKLKNNTLISCDLSYKHESLENQIIDLAGYPHFMLKEINGAGEAIKNIFNNIEKEKNYIINEMLSSDLSMTGSGSAYYVAMIGQYFFSRISGAYVATHPSDEFLNIKPLNRRDLIISISQSGETFDTLEVIRKAKENKSAIVSINNVFNCSMQRLADFPIFQGAGKEVCVLSTKSIISQVGALYLLATEMGLRTGKLSNSLYHSLLSDYKKLPEILNSVVSDYSDEIKRVAYQNCNIEHWFFIGRGAHYPVALESALKFKEVSYLHAEGMPAGFFKHGTISLIDKNFYTVVFLPSQINDNELYQSTIDNIYEIKARGGNVIGFGHQISKDLIGDLFFEYIALPDVNEHLNILIQLVAGQLLAYYSAVALNRNIDKPRSLAKSVTVR
SIO_010081: J9260_RS17955
subclass of: SO_0000673
so part of: J9260_RS17955
location: complement(7134..8966)
location: region:7134-8966:-1
so has part: feature:7134-8966:-1:exon

WP_210220843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7134-8966:-1:exon

J9260_RS17960
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17960
old locus tag: J9260_17955
so part of: sequence
location: complement(9000..10829)
location: region:9000-10829:-1
so has part: feature:9000-10829:-1:exon
subclass of: SO_0000010

position:9000:-1
position: 9000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10829:-1
position: 10829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9000-10829:-1:exon

J9260_RS17960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17960
old locus tag: J9260_17955
inference: COORDINATES: protein motif:HMM:NF012428.2
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
translation: MSIQSSLMPIYERVKPINGAWYSSQNNKKILDLSGQTLNLSLGQPPHEVREAIITEISKNVFFSSRFGSKTSENLANILIDIAPDNICCINHKLTNGSDAVETAIKIGCEMVRSSSIIALPNAWHGETMATLSLSSKLRGKYLGGNLNVTFSNEATIESLIEKINIIKRPSVVVIDPIGFSSGLFGFDNSKNFLPILRKSCQELGHFLIFDEIQSFGGFLEGEFFIYDIFNVESDAIAIGKALGQGFAVSACLYGKDTPELLYNEAEFTHGAQPPACAAAIAGIEYLKKNKSIIKTSLLLWNKLIDILESEFDEASFKRIGFVCSITPKKQEKTHLIFELLLNNGLIVRKGNASKSLMLKAPVVFNEEMFLWSLNVFRKCLNDLKSIKIDITSNYREIFRKENLEKSYVEFFLNHFSGVNINSRSIQEQYEVMLELDKIGIPCPKVYIKDELYIYSYITGISLDEYEIKSPREARSILSQLIDHIMKAHRNDIIIGDRWPGNTIWDGVCVTMIDFDIGYVGRNLSLMAFEHLFALFHHAAIIPKEMDRLKILTPYLHELKDAHENNNLYGIFIEFKKFYNSPRKKSNFTSLPVQIYQDVLHEFSTVICK
SIO_010081: J9260_RS17960
subclass of: SO_0000673
so part of: J9260_RS17960
location: complement(9000..10829)
location: region:9000-10829:-1
so has part: feature:9000-10829:-1:exon

WP_210220844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9000-10829:-1:exon

J9260_RS17965
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17965
old locus tag: J9260_17960
so part of: sequence
location: complement(11182..12024)
location: region:11182-12024:-1
so has part: feature:11182-12024:-1:exon
subclass of: SO_0000010

position:11182:-1
position: 11182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12024:-1
position: 12024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11182-12024:-1:exon

J9260_RS17965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17965
old locus tag: J9260_17960
inference: COORDINATES: protein motif:HMM:NF024098.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3800 domain-containing protein
translation: MHILYIDESGDTGQLPAQPGANDQPVFVIGALIVDAAKIGDLTRDFIDLKTRFYPGLVGECNKHLDRILPEIKGADLRRNALRGRHNVRRHAVGFLSKLLLILQAHDVRLLSRVWVKPLGQRFDGRAVYTSSIQWLYSSFENFLHDQDSLGFCIADSRDPLNNAIVAHSVFTQKFQSSSAAYGRTLELPTFAHSENHAGIQLCDIVCSALLYPIAAEAYCSGHVGNIHVQPGAAALRRRFGEELQNLQFRYREPLGKWNGGIVVSDPIGLRNAAGMFALD
SIO_010081: J9260_RS17965
subclass of: SO_0000673
so part of: J9260_RS17965
location: complement(11182..12024)
location: region:11182-12024:-1
so has part: feature:11182-12024:-1:exon

WP_210220845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11182-12024:-1:exon

J9260_RS17970
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17970
old locus tag: J9260_17965
so part of: sequence
location: complement(12129..12395)
location: region:12129-12395:-1
so has part: feature:12129-12395:-1:exon
subclass of: SO_0000010

position:12129:-1
position: 12129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12395:-1
position: 12395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12129-12395:-1:exon

J9260_RS17970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17970
old locus tag: J9260_17965
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQANDNPFPRSGNNFRTVAYAETDLELSLLVLELGFPVREDDSYTYDDLAADYAVAMAEFKQQLAAGECTDTVVDTRGNLPASLIANS
SIO_010081: J9260_RS17970
subclass of: SO_0000673
so part of: J9260_RS17970
location: complement(12129..12395)
location: region:12129-12395:-1
so has part: feature:12129-12395:-1:exon

WP_210220846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12129-12395:-1:exon

J9260_RS17975
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
gene: parA
locus tag: J9260_RS17975
old locus tag: J9260_17970
so part of: sequence
location: 12650..13267
location: region:12650-13267:1
so has part: feature:12650-13267:1:exon
subclass of: SO_0000010

position:12650:1
position: 12650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13267:1
position: 13267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12650-13267:1:exon

J9260_RS17975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
gene: parA
locus tag: J9260_RS17975
old locus tag: J9260_17970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006683253.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MKSLVFLSQKGGSGKTTLSVHTAVTAQESGEQVVIIDTDPQQSATTWADARESDSPPVATISVGEIDKVMNAARQEGISLAVVDTAPHATPDASKVAQIADLVVIPVRPSAFDIAAAGNAVQIARAAGAKTVFVLSACPFRSPEVNETRELLAGYGLPIAPMEITERRAFARAVASGRAVTEFESNGKAAEEIRALWEWLKGQME
SIO_010081: J9260_RS17975
subclass of: SO_0000673
so part of: J9260_RS17975
location: 12650..13267
location: region:12650-13267:1
so has part: feature:12650-13267:1:exon

WP_210220847.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12650-13267:1:exon

J9260_RS17980
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS17980
old locus tag: J9260_17975
so part of: sequence
location: 13264..13542
location: region:13264-13542:1
so has part: feature:13264-13542:1:exon
subclass of: SO_0000010

position:13264:1
position: 13264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13542:1
position: 13542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13264-13542:1:exon

J9260_RS17980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS17980
old locus tag: J9260_17975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012806101.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNKSTGLAAFTKQGRQAETNEDTSTNAPEQVEAKARQRGKGDVVALTLRLSRDDWQRVHQLALSEGISIQKLTMEGLSRMFEEKGLKGLSQ
SIO_010081: J9260_RS17980
subclass of: SO_0000673
so part of: J9260_RS17980
location: 13264..13542
location: region:13264-13542:1
so has part: feature:13264-13542:1:exon

WP_210220848.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13264-13542:1:exon